UHGV-1427549 (vOTU-069286)

Viral Genome: UHGV-1427549

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1427549
vOTU ID	vOTU-069286
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0239069
Associated BioSample	SAMN06328471
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.44
Jumbo phage	No

Genome content
Genome length (bp)	35,084
GC content	38.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	90%
Average CDS length (bps)	523.80
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1427549_1	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_4	phrog_7245	49.3	0.000000000000062	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1427549_4	UniRef90_A0A1V0QDP9	68.9	0.000000000102	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-1427549_4	1408436.JHXY01000046_gene1357	78.6	0.0000000000000321	N/A	N/A
Pfam	UHGV-1427549_4	PF08401	N/A	N/A	N-terminal domain of anti-restriction factor ArdC	ArdcN
COG	UHGV-1427549_4	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
PHROG	UHGV-1427549_6	phrog_144	54.4	0.0000000000000031	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427549_6	UniRef90_UPI00189741C6	82.8	6.8e-18	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1427549_6	33035.JPJF01000113_gene2099	70.5	0.000000000000118	HNH nucleases	N/A
COG	UHGV-1427549_6	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1427549_7	phrog_361	80.9	1.6e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1427549_7	UniRef90_UPI000307376F	124.0	2.67e-34	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1427549_7	1033744.CAEL01000029_gene1286	85.5	7.22e-20	Phage terminase, small subunit	N/A
Pfam	UHGV-1427549_7	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1427549_7	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_8	phrog_9	286.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1427549_8	UniRef90_R5VJG5	776.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1427549_8	491915.Aflv_0661	717.0	0	Phage Terminase	N/A
Pfam	UHGV-1427549_8	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1427549_8	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1427549_8	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1427549_8	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_9	phrog_12	191.4	0	portal protein	head and packaging
UniRef90	UHGV-1427549_9	UniRef90_UPI000CF8AFF7	499.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1427549_9	1232446.BAIE02000002_gene824	375.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1427549_9	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1427549_9	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1427549_9	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1427549_9	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1427549_10	K06904	164.0	0	N/A	N/A
PHROG	UHGV-1427549_10	phrog_80	188.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1427549_10	UniRef90_UPI000CF8530D	233.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1427549_10	398512.JQKC01000009_gene450	211.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1427549_10	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1427549_10	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1427549_10	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1427549_10	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_11	phrog_10	182.2	0	major head protein	head and packaging
UniRef90	UHGV-1427549_11	UniRef90_UPI000CF94CB7	366.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1427549_11	908340.HMPREF9406_2577	293.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1427549_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1427549_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1427549_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1427549_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_13	phrog_19734	62.5	4.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1427549_13	1232446.BAIE02000002_gene828	52.8	0.000000377	N/A	N/A
structural_annotation	UHGV-1427549_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1427549_14	1232446.BAIE02000002_gene829	102.0	5.61e-27	N/A	N/A
structural_annotation	UHGV-1427549_14	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1427549_15	908340.HMPREF9406_2573	91.3	4.58e-21	N/A	N/A
structural_annotation	UHGV-1427549_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_16	phrog_88	92.9	3.4e-27	major tail protein	tail
UniRef90	UHGV-1427549_16	UniRef90_A0A1C6CIL7	142.0	6.81e-38	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1427549_16	33035.JPJF01000039_gene278	66.2	0.00000000012	N/A	N/A
NCBIFam	UHGV-1427549_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1427549_16	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_18	phrog_1533	395.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1427549_18	UniRef90_A0A1M5PWE6	178.0	7.0107e-42	Phage tail tape measure protein, TP901 family, core region	N/A
eggNOG-mapper	UHGV-1427549_18	1220551.SCHR_00610	182.0	1.61149e-43	Phage tail tape measure protein	N/A
Pfam	UHGV-1427549_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1427549_18	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1427549_18	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-1427549_19	phrog_33	62.4	1.1e-17	distal tail protein Dit	tail
UniRef90	UHGV-1427549_19	UniRef90_A0A173Z1X4	122.0	1.24e-30	Phage-related protein	N/A
eggNOG-mapper	UHGV-1427549_19	908337.HMPREF9257_0528	78.2	0.0000000000000169	phage tail	N/A
COG	UHGV-1427549_19	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1427549_19	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_20	phrog_1067	307.7	0	minor head protein	head and packaging
UniRef90	UHGV-1427549_20	UniRef90_UPI000CF99656	416.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1427549_20	1160721.RBI_I01574	272.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1427549_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1427549_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1427549_20	COG4926	N/A	N/A	Phage-related protein	N/A
Pfam	UHGV-1427549_22	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-1427549_23	phrog_17147	86.0	2.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1427549_23	478749.BRYFOR_08557	78.6	0.000000000000125	N/A	N/A
KOfam	UHGV-1427549_24	K07496	119.6	3.1e-35	K07496; putative transposase	N/A
PHROG	UHGV-1427549_24	phrog_506	116.6	2.2e-34	transposase	integration and excision
UniRef90	UHGV-1427549_24	UniRef90_A0A1H4E604	351.0	0	Putative transposase	N/A
eggNOG-mapper	UHGV-1427549_24	1408311.JNJM01000013_gene2347	345.0	0	Putative transposase DNA-binding domain	N/A
PADLOC	UHGV-1427549_24	Cas14u	57.9	3.7e-17	CAS-V-F; effector__SPE	CRISPR-CAS
Pfam	UHGV-1427549_24	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-1427549_24	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-1427549_24	NF040570.1	N/A	N/A	RNA-guided endonuclease TnpB family protein	N/A
COG	UHGV-1427549_24	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1427549_24	PF01385,PF07282,NF038281,COG0675	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_25	phrog_17147	141.7	4.30058e-42	N/A	unknown function
eggNOG-mapper	UHGV-1427549_25	457412.RSAG_01112	122.0	6.75e-28	N/A	N/A
PHROG	UHGV-1427549_27	phrog_1382	45.8	0.00000000000057	N/A	unknown function
KOfam	UHGV-1427549_28	K07273	204.1	0	acm; lysozyme	N/A
PHROG	UHGV-1427549_28	phrog_291	210.1	0	endolysin	lysis
UniRef90	UHGV-1427549_28	UniRef90_UPI001D017004	308.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1427549_28	1235798.C817_00299	257.0	0	family 25	N/A
Pfam	UHGV-1427549_28	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1427549_28	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-1427549_28	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1427549_28	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1427549_28	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_29	phrog_1129	75.9	3.3e-22	holin	lysis
UniRef90	UHGV-1427549_29	UniRef90_U2Q4W5	117.0	1.67e-32	Holin family protein	N/A
eggNOG-mapper	UHGV-1427549_29	1256908.HMPREF0373_00463	117.0	2.81e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1427549_29	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1427549_29	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_30	phrog_4105	109.9	1.1e-32	N/A	unknown function
UniRef90	UHGV-1427549_30	UniRef90_A0A8D9UHA9	123.0	1.27e-34	Holin protein	N/A
eggNOG-mapper	UHGV-1427549_30	411460.RUMTOR_01326	152.0	0	N/A	N/A
KOfam	UHGV-1427549_31	K07729	47.0	0.00000000000054	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1427549_31	phrog_3	41.2	0.000000000061	transcriptional repressor	transcription regulation
UniRef90	UHGV-1427549_31	UniRef90_UPI00195F9AA7	55.1	0.0000000131	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1427549_31	1122915.AUGY01000087_gene5242	49.3	0.00000045	transcriptional	N/A
PADLOC	UHGV-1427549_31	retron_type_VI_hth_cluster2_1	41.1	0.000000000058	N/A	Retron
Pfam	UHGV-1427549_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1427549_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1427549_31	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_32	phrog_2324	93.4	1.9e-27	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427549_32	UniRef90_A0A366DNY1	71.2	0.0000000000111	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-1427549_32	508419.F8J181_9CAUD	68.2	0.0000000000229	N/A	N/A
Pfam	UHGV-1427549_32	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1427549_32	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_34	phrog_6244	83.6	2.7e-24	N/A	unknown function
UniRef90	UHGV-1427549_34	UniRef90_A0A7W3SYY9	52.4	0.000000358	Putative phage-related endonuclease	N/A
COG	UHGV-1427549_34	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-1427549_35	phrog_298	77.1	1.3e-22	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427549_35	UniRef90_A0A843HPP6	159.0	0	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-1427549_35	1399942.U3PDT7_9CAUD	218.0	0	nuclease activity	N/A
structural_annotation	UHGV-1427549_35	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-1427549_36	K03111	115.6	6.9e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1427549_36	phrog_44	130.4	1.4e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427549_36	UniRef90_A0A3E3DZV8	127.0	3.47e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1427549_36	999413.HMPREF1094_04611	116.0	1.66e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1427549_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1427549_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1427549_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1427549_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1427549_36	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_37	phrog_72	53.8	0.0000000000000035	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1427549_37	626523.GCWU000342_01037	64.7	0.0000000000643	N/A	N/A
structural_annotation	UHGV-1427549_37	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_38	phrog_7566	63.6	2.6e-18	N/A	unknown function
PHROG	UHGV-1427549_39	phrog_190	134.8	5e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427549_39	UniRef90_A0A7X9CKX4	121.0	7.63e-33	N/A	N/A
eggNOG-mapper	UHGV-1427549_39	525255.HMPREF0077_0413	119.0	4.18e-33	N/A	N/A
Pfam	UHGV-1427549_39	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1427549_39	PF06356,MF_00130,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_40	phrog_15768	102.0	6.8e-30	N/A	unknown function
UniRef90	UHGV-1427549_40	UniRef90_A0A2S0M9A1	101.0	2.43e-22	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1427549_40	588581.Cpap_1283	98.2	1.19e-21	DnaD domain protein	N/A
Pfam	UHGV-1427549_40	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1427549_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1427549_40	PF13730,MF_01177,TIGR01610,COG3432	N/A	N/A	N/A	N/A
KOfam	UHGV-1427549_41	K02315	196.1	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1427549_41	phrog_50	182.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427549_41	UniRef90_R6WX70	227.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1427549_41	1392493.JIAB01000001_gene1377	213.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1427549_41	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1427549_41	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1427549_41	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1427549_41	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427549_53	TIGR01439	N/A	N/A	N/A	N/A
PHROG	UHGV-1427549_54	phrog_803	57.4	3e-16	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1427549_54	UniRef90_A0A437SSA2	56.2	0.00000000368	Integrase	N/A
eggNOG-mapper	UHGV-1427549_54	1002809.SSIL_1411	62.8	0.00000000000175	N/A	N/A