UHGV-1427661 (vOTU-018160)

Viral Genome: UHGV-1427661

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1427661
vOTU ID	vOTU-018160
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0228997
Associated BioSample	SAMN05414944
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.72 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.82
Jumbo phage	No

Genome content
Genome length (bp)	33,122
GC content	54.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	90%
Average CDS length (bps)	481.26
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1427661_3	phrog_13256	65.3	5.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1427661_3	1226322.HMPREF1545_00132	66.6	0.0000000000000903	N/A	N/A
PHROG	UHGV-1427661_4	phrog_1863	63.6	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1427661_4	748224.HMPREF9436_01412	99.0	1.99e-26	N/A	N/A
PHROG	UHGV-1427661_5	phrog_1382	42.6	0.0000000000042	N/A	unknown function
eggNOG-mapper	UHGV-1427661_5	1336234.JAGN01000004_gene512	53.9	0.00000000849	N/A	N/A
eggNOG-mapper	UHGV-1427661_7	742738.HMPREF9460_01382	92.0	2.79e-17	N/A	N/A
structural_annotation	UHGV-1427661_7	PF13620,NF040788,COG2512	N/A	N/A	N/A	N/A
COG	UHGV-1427661_8	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-1427661_8	PF00354	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_9	phrog_13879	456.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1427661_9	1235797.C816_02659	798.0	0	N/A	N/A
structural_annotation	UHGV-1427661_9	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1427661_10	1235797.C816_02660	87.0	3e-20	N/A	N/A
structural_annotation	UHGV-1427661_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_11	phrog_6900	253.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1427661_11	UniRef90_A0A3D1JBH2	258.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1427661_11	1499683.CCFF01000017_gene2565	296.0	0	tape measure	N/A
COG	UHGV-1427661_11	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427661_11	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_12	phrog_7115	121.6	3.8e-36	N/A	unknown function
UniRef90	UHGV-1427661_12	UniRef90_A0A810PSE6	226.0	0	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1427661_12	1514668.JOOA01000002_gene2950	206.0	0	Bacterial PH domain	N/A
Pfam	UHGV-1427661_12	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-1427661_12	PF08000,MF_00437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427661_14	UniRef90_A0A285PXU7	72.0	0.00000000000015	Consensus disorder prediction	N/A
PHROG	UHGV-1427661_15	phrog_885	86.4	2.6e-25	major tail protein	tail
UniRef90	UHGV-1427661_15	UniRef90_A0A843J9F0	209.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1427661_15	1504822.CCNO01000012_gene492	247.0	0	N/A	N/A
structural_annotation	UHGV-1427661_15	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427661_16	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_17	phrog_17977	80.4	1.4e-23	N/A	unknown function
UniRef90	UHGV-1427661_17	UniRef90_UPI00141211AB	94.4	1.18e-22	head-tail adaptor protein	N/A
structural_annotation	UHGV-1427661_17	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_19	phrog_544	294.9	0	major head protein	head and packaging
UniRef90	UHGV-1427661_19	UniRef90_UPI0019576143	395.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1427661_19	411471.SUBVAR_06940	381.0	0	N/A	N/A
NCBIFam	UHGV-1427661_19	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1427661_19	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427661_20	UniRef90_A0A7U8IMT7	55.5	0.00000483	Phage minor structural protein	N/A
structural_annotation	UHGV-1427661_20	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427661_21	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_22	phrog_5	66.5	5e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-1427661_22	UniRef90_A0A4D7AJK9	192.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1427661_22	1504822.CCNO01000013_gene284	99.4	3.16e-25	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1427661_22	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1427661_22	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_23	phrog_115	115.4	3.3e-34	minor head protein	head and packaging
UniRef90	UHGV-1427661_23	UniRef90_A0A810PSD3	532.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1427661_23	1111121.HMPREF1247_0797	155.0	4.05e-40	cell adhesion	N/A
Pfam	UHGV-1427661_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1427661_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427661_23	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_24	phrog_64	149.2	9.80909e-45	portal protein	head and packaging
UniRef90	UHGV-1427661_24	UniRef90_UPI0018A8A301	541.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1427661_24	1235800.C819_02239	83.2	0.0000000000000196	phage portal protein, SPP1	N/A
Pfam	UHGV-1427661_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1427661_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1427661_25	K06909	379.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1427661_25	phrog_3717	159.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1427661_25	UniRef90_A0A4D7AZ70	724.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1427661_25	411461.DORFOR_01162	450.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1427661_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1427661_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1427661_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1427661_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1427661_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1427661_27	K07319	123.3	2.2e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1427661_27	phrog_498	441.5	0	DNA methyltransferase	other
UniRef90	UHGV-1427661_27	UniRef90_A0A810Q3Z7	438.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-1427661_27	1423758.BN55_01455	425.0	0	DNA methylase	N/A
PADLOC	UHGV-1427661_27	MTase_II_00015	239.5	0	Type II methyltransferase	RM
Pfam	UHGV-1427661_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1427661_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1427661_27	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1427661_27	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1427661_28	K22299	43.6	0.0000000000057	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1427661_28	phrog_8	47.6	0.00000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-1427661_28	UniRef90_A0A1C6J963	103.0	1.04e-27	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1427661_28	536232.CLM_2628	48.1	0.00000235	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1427661_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1427661_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1427661_28	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427661_29	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-1427661_30	K02647	57.5	1.9e-16	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-1427661_30	UniRef90_UPI00164DE10C	60.1	0.000000000139	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1427661_30	1301100.HG529387_gene5110	60.8	0.000000000451	Putative sugar diacid recognition	N/A
Pfam	UHGV-1427661_30	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-1427661_30	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-1427661_30	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427661_34	UniRef90_A0A8D9PDT5	139.0	1.68e-40	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1427661_37	phrog_757	183.7	0	DNA methyltransferase	other
UniRef90	UHGV-1427661_37	UniRef90_A0A3E2U1Y9	259.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1427661_37	748224.HMPREF9436_03069	260.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1427661_37	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1427661_37	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1427661_40	K01160	41.3	0.000000000037	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1427661_40	phrog_4632	68.2	9.1e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427661_40	UniRef90_A0A7X8IB41	119.0	3.07e-32	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1427661_40	469604.HMPREF0946_00819	65.1	0.00000000000721	N/A	N/A
structural_annotation	UHGV-1427661_40	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_42	phrog_2149	69.6	5.4e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427661_42	UniRef90_A0A417QFV0	105.0	8.54e-24	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1427661_42	742740.HMPREF9474_03117	185.0	0	N/A	N/A
structural_annotation	UHGV-1427661_42	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1427661_43	K03111	152.9	2.8026e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1427661_43	phrog_44	151.8	2.8026e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427661_43	UniRef90_A0A1C5QDM6	209.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1427661_43	1226322.HMPREF1545_04080	209.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1427661_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1427661_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1427661_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1427661_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1427661_43	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_44	phrog_7370	59.5	4.8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427661_44	UniRef90_UPI001C122365	131.0	2.06e-37	HNH endonuclease	N/A
Pfam	UHGV-1427661_44	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-1427661_45	phrog_72	67.4	1.8e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427661_45	UniRef90_A0A8D9PDS2	181.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1427661_45	445972.ANACOL_01825	155.0	0	N/A	N/A
structural_annotation	UHGV-1427661_45	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_46	phrog_7838	151.1	7.00649e-45	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427661_46	UniRef90_A0A8D9UGW3	269.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1427661_46	742767.HMPREF9456_02052	186.0	0	N/A	N/A
structural_annotation	UHGV-1427661_46	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1427661_48	phrog_4973	42.3	0.000000000011	N/A	unknown function
Pfam	UHGV-1427661_48	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1427661_48	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427661_50	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427661_54	UniRef90_A0A810QCI5	70.9	0.0000000000000077	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1427661_54	1514668.JOOA01000002_gene1643	52.8	0.000000312	N/A	N/A
Pfam	UHGV-1427661_54	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1427661_54	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1427661_54	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427661_55	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427661_58	UniRef90_A0A6J7P3L5	74.7	6.97e-17	Unannotated protein	N/A
eggNOG-mapper	UHGV-1427661_58	483216.BACEGG_01163	66.2	0.0000000000000328	N/A	N/A
Pfam	UHGV-1427661_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1427661_59	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1427661_59	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1427661_60	K06400	289.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1427661_60	phrog_95	303.3	0	integrase	integration and excision
UniRef90	UHGV-1427661_60	UniRef90_A0A3A9ED02	348.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-1427661_60	357809.Cphy_2997	297.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-1427661_60	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1427661_60	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1427661_60	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1427661_60	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1427661_61	1232443.BAIA02000078_gene6	55.8	0.0000000149	N/A	N/A