UHGV-1428027 (vOTU-013014)

Viral Genome: UHGV-1428027

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1428027
vOTU ID	vOTU-013014
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0229033
Associated BioSample	SAMN00065013
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.46 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9766
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.27
Jumbo phage	No

Genome content
Genome length (bp)	33,129
GC content	34.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	89%
Average CDS length (bps)	616.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1428027_1	phrog_422	304.5	0	major head protein	head and packaging
UniRef90	UHGV-1428027_1	UniRef90_A0A413RCT9	521.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1428027_1	552396.HMPREF0863_01635	389.0	0	N/A	N/A
structural_annotation	UHGV-1428027_1	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_2	phrog_1378	70.5	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1428027_2	552396.HMPREF0863_01636	66.2	0.000000000000509	N/A	N/A
PHROG	UHGV-1428027_3	phrog_541	87.0	1.7e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-1428027_3	742740.HMPREF9474_03507	169.0	0	N/A	N/A
PHROG	UHGV-1428027_4	phrog_8710	135.2	1.90001e-40	N/A	unknown function
eggNOG-mapper	UHGV-1428027_4	1304866.K413DRAFT_0782	137.0	1.35e-40	N/A	N/A
structural_annotation	UHGV-1428027_4	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_5	phrog_556	72.0	7.6e-21	minor head protein	head and packaging
eggNOG-mapper	UHGV-1428027_5	742740.HMPREF9474_03509	167.0	0	N/A	N/A
Pfam	UHGV-1428027_5	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-1428027_6	phrog_2595	98.5	5.1e-29	head-tail connector protein	connector
UniRef90	UHGV-1428027_6	UniRef90_UPI001D0627B3	135.0	1.21e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-1428027_6	1282664.H354_06686	149.0	1.54143e-44	N/A	N/A
Pfam	UHGV-1428027_6	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1428027_6	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_7	phrog_820	114.0	8.2e-34	major tail protein	tail
eggNOG-mapper	UHGV-1428027_7	33035.JPJF01000093_gene2246	193.0	0	N/A	N/A
structural_annotation	UHGV-1428027_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_8	phrog_8300	88.1	7.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1428027_8	1282664.H354_06701	90.9	1.4e-22	N/A	N/A
structural_annotation	UHGV-1428027_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_9	phrog_8355	85.9	2.3e-25	N/A	unknown function
UniRef90	UHGV-1428027_9	UniRef90_UPI001F2CFAB2	80.5	4.83e-18	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-1428027_9	1232449.BAHV02000018_gene1518	68.6	0.0000000000000378	Bacteriophage Gp15 protein	N/A
PHROG	UHGV-1428027_10	phrog_1535	271.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1428027_10	UniRef90_A0A1C5PIN9	759.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1428027_10	33035.JPJF01000093_gene2243	460.0	0	phage tail tape measure protein	N/A
COG	UHGV-1428027_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1428027_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_11	phrog_1194	81.9	6.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1428027_11	33035.JPJF01000093_gene2242	158.0	0	N/A	N/A
structural_annotation	UHGV-1428027_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_12	phrog_6616	394.7	0	tail protein	tail
UniRef90	UHGV-1428027_12	UniRef90_A0A0J1FXD9	302.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1428027_12	476272.RUMHYD_01992	198.0	0	N/A	N/A
Pfam	UHGV-1428027_12	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1428027_12	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1428027_13	PF10651,PF19487,NF033814,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_14	phrog_199	68.0	1.1e-19	holin	lysis
UniRef90	UHGV-1428027_14	UniRef90_UPI000E4FBD87	265.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1428027_14	411462.DORLON_00766	187.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1428027_14	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1428027_14	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1428027_14	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1428027_14	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1428027_15	K01447	95.4	8e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1428027_15	phrog_9611	110.1	2.3e-32	endolysin	lysis
UniRef90	UHGV-1428027_15	UniRef90_A0A352SK06	184.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1428027_15	1042156.CXIVA_01560	155.0	9.80909e-45	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1428027_15	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1428027_15	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1428027_15	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-1428027_16	K06400	359.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1428027_16	phrog_95	353.8	0	integrase	integration and excision
UniRef90	UHGV-1428027_16	UniRef90_R5YR86	941.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-1428027_16	411462.DORLON_00823	459.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1428027_16	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1428027_16	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1428027_16	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1428027_16	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1428027_16	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1428027_17	K01356	158.8	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1428027_17	phrog_4	127.3	1.4e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-1428027_17	UniRef90_R5ZK71	412.0	0	Putative repressor LexA	N/A
eggNOG-mapper	UHGV-1428027_17	411490.ANACAC_00815	319.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1428027_17	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-1428027_17	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1428027_17	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1428027_17	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1428027_19	K18830	42.7	0.000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1428027_19	phrog_8	40.7	0.000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-1428027_19	UniRef90_R5YR82	155.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1428027_19	411490.ANACAC_00814	105.0	4.68e-29	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1428027_19	retron_type_VI_hth_cluster2_1	41.1	0.00000000005	N/A	Retron
Pfam	UHGV-1428027_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1428027_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1428027_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_22	phrog_434	158.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428027_22	UniRef90_UPI0019150417	279.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1428027_22	1095750.HMPREF9970_1677	246.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1428027_22	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1428027_22	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1428027_22	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1428027_22	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_23	phrog_674	186.8	0	N/A	unknown function
UniRef90	UHGV-1428027_23	UniRef90_A0A413RZX0	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-1428027_23	742740.HMPREF9474_03487	220.0	0	N/A	N/A
Pfam	UHGV-1428027_23	PF07083	N/A	N/A	N/A	DUF1351
KOfam	UHGV-1428027_25	K07455	206.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1428027_25	phrog_148	218.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428027_25	UniRef90_UPI0004130437	416.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1428027_25	742765.HMPREF9457_02107	376.0	0	RecT family	N/A
Pfam	UHGV-1428027_25	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1428027_25	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1428027_25	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1428027_25	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1428027_26	PF21715,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1428027_27	K01160	40.6	0.000000000058	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1428027_27	phrog_140	106.9	1.8e-31	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428027_27	UniRef90_UPI00157032DC	160.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1428027_27	642492.Clole_2784	114.0	1.11e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1428027_27	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1428027_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1428027_27	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_28	phrog_2562	123.6	1.6e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428027_28	UniRef90_A0A413RCW1	323.0	0	N/A	N/A
eggNOG-mapper	UHGV-1428027_28	1507.HMPREF0262_00435	164.0	0	N/A	N/A
Pfam	UHGV-1428027_28	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1428027_28	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1428027_28	PF14297,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1428027_29	PF20531	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_31	phrog_17690	130.3	6.1e-39	N/A	unknown function
UniRef90	UHGV-1428027_31	UniRef90_A0A6L5XWF4	126.0	4.64e-35	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-1428027_31	33035.JPJF01000123_gene2433	134.0	1.08e-38	N/A	N/A
UniRef90	UHGV-1428027_32	UniRef90_A0A373LPL3	121.0	7.16e-35	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-1428027_32	1042156.CXIVA_01870	68.9	0.00000000000000658	N/A	N/A
structural_annotation	UHGV-1428027_32	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_33	phrog_20593	55.0	6.4e-16	N/A	unknown function
PHROG	UHGV-1428027_36	phrog_36	45.7	0.0000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-1428027_36	UniRef90_UPI001C010EDC	187.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1428027_36	411462.DORLON_00800	67.4	0.00000000000207	N/A	N/A
Pfam	UHGV-1428027_36	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
eggNOG-mapper	UHGV-1428027_37	1410628.JNKS01000023_gene1753	192.0	0	N/A	N/A
structural_annotation	UHGV-1428027_37	PF20505	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1428027_38	610130.Closa_1386	65.5	0.0000000000221	N/A	N/A
KOfam	UHGV-1428027_39	K07474	92.6	8.3e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1428027_39	phrog_51	112.5	3.5e-33	terminase small subunit	head and packaging
UniRef90	UHGV-1428027_39	UniRef90_A0A413RCV1	322.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1428027_39	1256908.HMPREF0373_00489	145.0	7.71975e-42	Terminase small subunit	N/A
Pfam	UHGV-1428027_39	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1428027_39	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1428027_39	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1428027_40	K06909	91.1	1.6e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1428027_40	phrog_2	81.6	1.5e-23	terminase large subunit	head and packaging
UniRef90	UHGV-1428027_40	UniRef90_A0A413RCQ1	917.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1428027_40	552396.HMPREF0863_01628	583.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1428027_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1428027_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1428027_40	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_41	phrog_533	283.8	0	portal protein	head and packaging
UniRef90	UHGV-1428027_41	UniRef90_A0A413RCQ7	898.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1428027_41	33035.JPJF01000093_gene2257	577.0	0	N/A	N/A
structural_annotation	UHGV-1428027_41	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_42	phrog_25639	100.2	9e-30	N/A	unknown function
eggNOG-mapper	UHGV-1428027_42	742740.HMPREF9474_03502	77.0	1.32e-17	N/A	N/A
PHROG	UHGV-1428027_43	phrog_581	227.1	0	minor head protein	head and packaging
UniRef90	UHGV-1428027_43	UniRef90_A0A3D5LQU4	416.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1428027_43	33035.JPJF01000093_gene2255	391.0	0	N/A	N/A
Pfam	UHGV-1428027_43	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1428027_43	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1428027_43	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_45	phrog_3675	114.4	4e-34	N/A	unknown function
UniRef90	UHGV-1428027_45	UniRef90_A0A3E2WML7	166.0	0	Dihydrolipoyl dehydrogenase	N/A
eggNOG-mapper	UHGV-1428027_45	596329.HMPREF0631_0681	126.0	2.27e-36	YjcQ protein	N/A
Pfam	UHGV-1428027_45	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1428027_45	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-1428027_47	phrog_2303	161.8	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1428027_47	483218.BACPEC_01156	145.0	1.38e-40	N/A	N/A