UHGV-1428055 (vOTU-162250)

Viral Genome: UHGV-1428055

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1428055
vOTU ID	vOTU-162250
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0234691
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.68 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9746
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.44
Jumbo phage	No

Genome content
Genome length (bp)	34,249
GC content	41.63%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	93%
Average CDS length (bps)	626.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-1428055_1	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
KOfam	UHGV-1428055_2	K03091	44.5	0.0000000000028	sigH; RNA polymerase sporulation-specific sigma factor	N/A
COG	UHGV-1428055_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
UniRef90	UHGV-1428055_3	UniRef90_A0A417PKX1	313.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1428055_3	1116472.MGMO_8c00720	63.5	0.000000000111	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1428055_3	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1428055_3	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1428055_3	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_4	phrog_3584	133.9	1.1e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1428055_4	483218.BACPEC_01173	233.0	0	N/A	N/A
structural_annotation	UHGV-1428055_4	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-1428055_6	UniRef90_R5VU56	130.0	4.08e-37	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-1428055_6	PF20063	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_7	K03427	64.8	1.3e-18	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1428055_7	phrog_5696	239.6	0	N/A	unknown function
UniRef90	UHGV-1428055_7	UniRef90_A0A8E3SKS1	207.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1428055_7	1245471.PCA10_p0930	154.0	1.13505e-43	N-6 DNA Methylase	N/A
Pfam	UHGV-1428055_7	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1428055_7	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1428055_7	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_8	K04763	185.9	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1428055_8	phrog_1	158.8	0	integrase	integration and excision
UniRef90	UHGV-1428055_8	UniRef90_UPI001DC26F47	300.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1428055_8	689781.AUJX01000017_gene2491	214.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1428055_8	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1428055_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1428055_8	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1428055_8	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_9	phrog_31564	43.2	0.0000000000075	N/A	unknown function
KOfam	UHGV-1428055_12	K22300	67.6	2.7e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1428055_12	phrog_8	53.5	0.0000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-1428055_12	UniRef90_UPI00189D7AB4	252.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1428055_12	742741.HMPREF9475_00400	169.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1428055_12	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1428055_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1428055_12	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_14	K23779	53.1	0.0000000000000074	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-1428055_14	UniRef90_UPI00189ED8FE	127.0	2.77e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1428055_14	411468.CLOSCI_01455	97.4	3.73e-26	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1428055_14	retron_type_VI_hth_cluster2_1	42.0	0.000000000025	N/A	Retron
Pfam	UHGV-1428055_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1428055_14	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_15	K02342	168.2	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1428055_15	phrog_192	154.6	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428055_15	UniRef90_UPI0018A10D95	762.0	0	3'-5' exonuclease	N/A
eggNOG-mapper	UHGV-1428055_15	1203606.HMPREF1526_00999	205.0	0	EXOIII	N/A
PADLOC	UHGV-1428055_15	cd06127	130.6	8.2e-39	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1428055_15	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-1428055_15	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-1428055_15	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-1428055_16	K14059	158.1	0	int; integrase	N/A
PHROG	UHGV-1428055_16	phrog_1	177.1	0	integrase	integration and excision
UniRef90	UHGV-1428055_16	UniRef90_UPI00189E922D	729.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1428055_16	1280698.AUJS01000007_gene999	222.0	0	Phage integrase family	N/A
Pfam	UHGV-1428055_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1428055_16	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1428055_16	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_17	phrog_1129	74.4	1e-21	holin	lysis
UniRef90	UHGV-1428055_17	UniRef90_A0A416AFW1	165.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1428055_17	411461.DORFOR_00721	100.0	7.07e-27	N/A	N/A
Pfam	UHGV-1428055_17	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1428055_17	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_18	phrog_1863	60.9	9.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-1428055_18	1226322.HMPREF1545_04027	67.0	0.000000000000165	N/A	N/A
PHROG	UHGV-1428055_19	phrog_9994	176.7	0	N/A	unknown function
UniRef90	UHGV-1428055_19	UniRef90_UPI000C76CD77	133.0	1.21e-33	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-1428055_19	1256908.HMPREF0373_00465	137.0	8.6e-36	N/A	N/A
structural_annotation	UHGV-1428055_19	PF20747	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_20	K01446	74.6	1.1e-21	PGRP; peptidoglycan recognition protein	N/A
PHROG	UHGV-1428055_20	phrog_1493	143.0	2.40042e-42	endolysin	lysis
UniRef90	UHGV-1428055_20	UniRef90_A0A416AFQ9	583.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1428055_20	1280698.AUJS01000007_gene1059	162.0	1.4013e-45	Ami_2	N/A
Pfam	UHGV-1428055_20	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1428055_20	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1428055_20	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1428055_20	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1428055_22	1294142.CINTURNW_1705	50.8	0.00000249	N/A	N/A
structural_annotation	UHGV-1428055_22	PF07761	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_23	K16628	47.7	0.000000000000042	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1428055_23	phrog_538	157.5	0	minor tail protein	tail
eggNOG-mapper	UHGV-1428055_23	428127.EUBDOL_01565	320.0	0	cellulase activity	N/A
Pfam	UHGV-1428055_23	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1428055_23	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-1428055_24	phrog_33	52.2	0.000000000000015	distal tail protein Dit	tail
UniRef90	UHGV-1428055_24	UniRef90_UPI0015709E93	145.0	1.15e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-1428055_24	658655.HMPREF0988_02551	166.0	0	N/A	N/A
structural_annotation	UHGV-1428055_24	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_25	phrog_6900	264.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1428055_25	UniRef90_A0A417PEV9	791.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1428055_25	536233.CLO_1577	326.0	0	tape measure	N/A
COG	UHGV-1428055_25	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1428055_25	PF20155,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_27	phrog_1021	69.2	6.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1428055_27	1256908.HMPREF0373_00470	82.4	9.72e-18	N/A	N/A
PHROG	UHGV-1428055_28	phrog_885	167.9	0	major tail protein	tail
eggNOG-mapper	UHGV-1428055_28	1256908.HMPREF0373_00471	251.0	0	N/A	N/A
structural_annotation	UHGV-1428055_28	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1428055_29	1235800.C819_02229	98.6	8.01e-25	N/A	N/A
structural_annotation	UHGV-1428055_29	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-1428055_30	UniRef90_A0A416AFH6	265.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1428055_30	1235800.C819_02230	145.0	3.40516e-43	N/A	N/A
Pfam	UHGV-1428055_30	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1428055_30	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_31	phrog_1059	92.1	3.9e-27	head-tail adaptor	connector
UniRef90	UHGV-1428055_31	UniRef90_A0A416AFR5	223.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1428055_31	1256908.HMPREF0373_00474	144.0	1.5134e-43	N/A	N/A
structural_annotation	UHGV-1428055_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_32	phrog_1236	184.9	0	head protein	head and packaging
eggNOG-mapper	UHGV-1428055_32	1256908.HMPREF0373_00475	206.0	0	N/A	N/A
structural_annotation	UHGV-1428055_32	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_34	phrog_212	236.3	0	major head protein	head and packaging
UniRef90	UHGV-1428055_34	UniRef90_A0A3R6IQQ6	629.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1428055_34	1235800.C819_02234	514.0	0	N/A	N/A
structural_annotation	UHGV-1428055_34	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_35	phrog_194	82.8	4.9e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-1428055_35	UniRef90_UPI000E5C7AD7	221.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1428055_35	1235800.C819_02235	113.0	1.69e-28	Phage minor structural protein GP20	N/A
Pfam	UHGV-1428055_35	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1428055_35	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_37	phrog_595	195.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1428055_37	UniRef90_A0A3R6VT31	1359.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1428055_37	1256908.HMPREF0373_00484	314.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1428055_37	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1428055_37	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_38	phrog_64	284.2	0	portal protein	head and packaging
UniRef90	UHGV-1428055_38	UniRef90_A0A416AFV1	958.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1428055_38	1256908.HMPREF0373_00485	612.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1428055_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1428055_38	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_39	K06909	308.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1428055_39	phrog_3717	256.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1428055_39	UniRef90_A0A417PEX5	858.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1428055_39	476272.RUMHYD_02845	706.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1428055_39	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1428055_39	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1428055_39	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1428055_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1428055_39	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_40	K07474	138.1	1.10001e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1428055_40	phrog_51	143.1	1.3999e-42	terminase small subunit	head and packaging
UniRef90	UHGV-1428055_40	UniRef90_A0A3R6SKK4	274.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1428055_40	1256908.HMPREF0373_00489	158.0	0	Terminase small subunit	N/A
Pfam	UHGV-1428055_40	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1428055_40	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1428055_40	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_42	phrog_20593	44.2	0.0000000000016	N/A	unknown function
PHROG	UHGV-1428055_45	phrog_8684	113.6	6.7e-34	N/A	unknown function
UniRef90	UHGV-1428055_45	UniRef90_A0A3R6DZN9	210.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1428055_45	742723.HMPREF9477_00921	150.0	7.00649e-45	YopX protein	N/A
Pfam	UHGV-1428055_45	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1428055_45	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1428055_45	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_47	phrog_2118	123.8	1.4e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428055_47	UniRef90_R5ZJF1	201.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1428055_47	742740.HMPREF9474_03129	131.0	4.79e-38	HNH endonuclease	N/A
Pfam	UHGV-1428055_47	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1428055_47	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1428055_47	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1428055_48	phrog_36	54.3	0.000000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-1428055_48	UniRef90_A0A6N7XL46	102.0	8.94e-25	Sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1428055_48	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
PHROG	UHGV-1428055_50	phrog_424	93.5	2e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1428055_50	UniRef90_A0A2H4JC51	578.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-1428055_50	411461.DORFOR_01142	563.0	0	N/A	N/A
COG	UHGV-1428055_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1428055_50	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1428055_51	K00558	43.9	0.0000000000024	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1428055_51	phrog_23072	122.2	6e-36	DNA methyltransferase	other
UniRef90	UHGV-1428055_51	UniRef90_A0A1Q6UYZ8	182.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1428055_51	1235800.C819_02255	151.0	3.62936e-42	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1428055_51	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1428055_51	COG0270	N/A	N/A	DNA-cytosine methylase	N/A