UHGV-1428171 (vOTU-071420)

Viral Genome: UHGV-1428171

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1428171
vOTU ID	vOTU-071420
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0243593
Associated BioSample	SAMEA2738154
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.11
Jumbo phage	No

Genome content
Genome length (bp)	35,736
GC content	51.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	91%
Average CDS length (bps)	605.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1428171_1	phrog_544	158.9	0	major head protein	head and packaging
UniRef90	UHGV-1428171_1	UniRef90_A0A516KPU9	173.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-1428171_1	553184.ATORI0001_1002	427.0	0	N/A	N/A
structural_annotation	UHGV-1428171_1	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_2	phrog_132	57.5	2.4e-16	head-tail adaptor	connector
UniRef90	UHGV-1428171_2	UniRef90_X8HX34	158.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1428171_2	1125712.HMPREF1316_1516	154.0	0	N/A	N/A
structural_annotation	UHGV-1428171_2	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1428171_3	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_4	phrog_5	57.0	5.1e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-1428171_4	UniRef90_B9CN40	166.0	0	Putative phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1428171_4	1125712.HMPREF1316_1514	155.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1428171_4	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1428171_4	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_5	phrog_176	50.0	0.000000000000054	tail terminator	connector
UniRef90	UHGV-1428171_5	UniRef90_X8HW91	165.0	0	PF11367 family protein	N/A
eggNOG-mapper	UHGV-1428171_5	553184.ATORI0001_0998	200.0	0	N/A	N/A
Pfam	UHGV-1428171_5	PF16807	N/A	N/A	N/A	DUF5072
structural_annotation	UHGV-1428171_5	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_6	phrog_1407	82.2	5.5e-24	major tail protein	tail
UniRef90	UHGV-1428171_6	UniRef90_B9CN38	265.0	0	Phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1428171_6	553184.ATORI0001_0997	265.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1428171_6	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-1428171_6	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
COG	UHGV-1428171_6	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-1428171_6	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1428171_7	1235792.C808_05346	59.7	0.000000000305	N/A	N/A
structural_annotation	UHGV-1428171_7	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_9	phrog_58	220.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1428171_9	UniRef90_B9CN35	695.0	0	Putative phage virion morphogenesis protein	N/A
eggNOG-mapper	UHGV-1428171_9	553184.ATORI0001_0994	695.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1428171_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1428171_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1428171_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1428171_9	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-1428171_10	UniRef90_A0A8J6TW44	77.4	0.000000000000287	Phage tail family protein	N/A
eggNOG-mapper	UHGV-1428171_10	1203602.HMPREF1527_01081	342.0	0	N/A	N/A
structural_annotation	UHGV-1428171_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_11	phrog_24267	107.4	1.6e-31	N/A	unknown function
UniRef90	UHGV-1428171_11	UniRef90_R5LPM8	84.7	3.01e-18	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-1428171_11	1203602.HMPREF1527_01080	258.0	0	N/A	N/A
structural_annotation	UHGV-1428171_11	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_12	phrog_3558	343.2	0	tail protein	tail
UniRef90	UHGV-1428171_12	UniRef90_S2ZPQ2	543.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1428171_12	1203602.HMPREF1527_01079	543.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1428171_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1428171_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1428171_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1428171_12	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_14	phrog_443	65.7	1e-18	holin	lysis
UniRef90	UHGV-1428171_14	UniRef90_A0A1H4JBG1	77.4	3.31e-17	Phage r1t holin	N/A
eggNOG-mapper	UHGV-1428171_14	553184.ATORI0001_1165	108.0	3.45e-30	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1428171_14	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1428171_14	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1428171_15	K01447	77.1	2.7e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1428171_15	phrog_14048	134.0	1.2e-39	endolysin	lysis
UniRef90	UHGV-1428171_15	UniRef90_B9CLI8	446.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1428171_15	553184.ATORI0001_1164	446.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1428171_15	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1428171_15	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1428171_15	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1428171_15	PF01510,PF19127,MF_04111,TIGR04035,NF008758,COG5263,COG3023	N/A	N/A	N/A	N/A
KOfam	UHGV-1428171_16	K14059	230.2	0	int; integrase	N/A
PHROG	UHGV-1428171_16	phrog_1	212.6	0	integrase	integration and excision
UniRef90	UHGV-1428171_16	UniRef90_C8WA39	384.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-1428171_16	521095.Apar_0546	384.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1428171_16	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1428171_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1428171_16	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1428171_16	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1428171_18	K07729	56.6	5.7e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1428171_18	phrog_8	61.9	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1428171_18	UniRef90_A0A7X3UZE3	59.7	0.000000000688	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1428171_18	1198676.SMUGS5_00735	50.8	0.00000028	Transcriptional	N/A
Pfam	UHGV-1428171_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1428171_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1428171_19	K23779	41.7	0.000000000021	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-1428171_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1428171_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1428171_19	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1428171_21	K07741	98.4	1.6e-28	antB; anti-repressor protein	N/A
PHROG	UHGV-1428171_21	phrog_130	220.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1428171_21	UniRef90_UPI000E3CDD67	309.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1428171_21	553184.ATORI0001_1204	268.0	0	Antirepressor	N/A
Pfam	UHGV-1428171_21	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1428171_21	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1428171_21	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1428171_21	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
Pfam	UHGV-1428171_22	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1428171_22	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1428171_24	PF02559,TIGR03318,COG1329	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_25	phrog_21525	47.0	0.00000000000027	N/A	unknown function
KOfam	UHGV-1428171_27	K01160	53.7	0.000000000000006	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1428171_27	phrog_140	78.3	1.2e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428171_27	UniRef90_A0A133XPE4	103.0	1.07e-25	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1428171_27	479437.Elen_2598	70.5	0.000000000000177	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1428171_27	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1428171_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1428171_27	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_29	phrog_5479	63.0	4.4e-18	N/A	unknown function
COG	UHGV-1428171_29	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
UniRef90	UHGV-1428171_31	UniRef90_UPI001EF9F008	85.1	0.0000000000000127	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1428171_31	1123312.KB904568_gene379	97.8	5.67e-19	domain protein	N/A
Pfam	UHGV-1428171_31	PF17961	N/A	N/A	Bacterial Ig domain	Big_8
Pfam	UHGV-1428171_31	PF05737	N/A	N/A	Collagen binding domain	Collagen_bind
COG	UHGV-1428171_31	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
structural_annotation	UHGV-1428171_31	PF11766,NF033845,COG1470	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_33	phrog_34396	167.3	0	N/A	unknown function
UniRef90	UHGV-1428171_33	UniRef90_UPI0009355547	135.0	9.43e-34	N/A	N/A
Pfam	UHGV-1428171_33	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1428171_33	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_34	phrog_10048	165.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1428171_34	882.DVU_1523	147.0	1.46e-39	N/A	N/A
KOfam	UHGV-1428171_35	K03111	133.7	2.1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1428171_35	phrog_44	131.9	4.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428171_35	UniRef90_Z4WX95	219.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1428171_35	521095.Apar_0020	221.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1428171_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1428171_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1428171_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1428171_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1428171_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1428171_37	1125712.HMPREF1316_1526	59.7	0.00000000793	N/A	N/A
structural_annotation	UHGV-1428171_37	PF04545,MF_00674,TIGR03879	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_38	phrog_940	257.6	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428171_38	UniRef90_R7BP41	400.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1428171_38	1232449.BAHV02000018_gene1534	295.0	0	N/A	N/A
PADLOC	UHGV-1428171_38	MTase_II_00015	45.9	0.00000000000095	Type II methyltransferase	RM
Pfam	UHGV-1428171_38	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1428171_38	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1428171_38	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1428171_38	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
UniRef90	UHGV-1428171_41	UniRef90_A0A133XS49	146.0	6.62814e-43	Phage terminase, small subunit, P27 family	N/A
Pfam	UHGV-1428171_41	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1428171_41	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_42	phrog_9	151.9	4.2039e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1428171_42	UniRef90_UPI001D09400E	545.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1428171_42	521003.COLINT_02339	406.0	0	Terminase	N/A
COG	UHGV-1428171_42	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1428171_42	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_43	phrog_104	214.3	0	portal protein	head and packaging
UniRef90	UHGV-1428171_43	UniRef90_A0A374VFC7	550.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1428171_43	742742.HMPREF9452_01310	218.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1428171_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1428171_43	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_44	phrog_13257	95.8	5e-28	head maturation protease	head and packaging
UniRef90	UHGV-1428171_44	UniRef90_A0A6M8IWT8	122.0	1.04e-28	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1428171_44	1095772.CAHH01000063_gene655	71.2	0.00000000000781	N/A	N/A
PHROG	UHGV-1428171_45	phrog_9857	78.5	7.7e-23	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1428171_45	1688.BCUN_0247	51.2	0.0000081	N/A	N/A
PHROG	UHGV-1428171_46	phrog_544	103.8	1.8e-30	major head protein	head and packaging
UniRef90	UHGV-1428171_46	UniRef90_A0A7K3KIA2	266.0	0	Rho_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1428171_46	1121866.AUGK01000014_gene2054	229.0	0	N/A	N/A
structural_annotation	UHGV-1428171_46	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1428171_47	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_48	phrog_501	43.2	0.0000000000054	head closure Hc1	connector
eggNOG-mapper	UHGV-1428171_48	883077.HMPREF9241_01701	52.0	0.000000748	N/A	N/A
structural_annotation	UHGV-1428171_48	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_50	phrog_123	49.0	0.00000000000012	tail terminator	connector
structural_annotation	UHGV-1428171_50	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_51	phrog_117	63.5	3.7e-18	major tail protein	tail
UniRef90	UHGV-1428171_51	UniRef90_A0A8D5UII9	142.0	2.2e-39	Tail protein	N/A
eggNOG-mapper	UHGV-1428171_51	157924.Q9F4J6_9CAUD	58.5	0.0000000426	N/A	N/A
structural_annotation	UHGV-1428171_51	PF09393,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1428171_52	phrog_1526	43.9	0.0000000000034	N/A	unknown function
PHROG	UHGV-1428171_54	phrog_1686	168.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1428171_54	UniRef90_A0A316PW12	152.0	1.58e-39	TMP_3 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1428171_54	521095.Apar_0588	199.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1428171_54	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1428171_54	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1428171_54	COG0840	N/A	N/A	Methyl-accepting chemotaxis protein (MCP)	N/A