UHGV-1428179 (vOTU-096520)

Viral Genome: UHGV-1428179

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1428179
vOTU ID	vOTU-096520
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0243589
Associated BioSample	SAMEA4545413
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.95 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.04
Jumbo phage	No

Genome content
Genome length (bp)	35,735
GC content	56.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	93%
Average CDS length (bps)	735.87
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1428179_1	phrog_24159	52.1	1.3e-28	tail fiber protein	tail
eggNOG-mapper	UHGV-1428179_1	500635.MITSMUL_03163	326.0	0	Membrane	N/A
COG	UHGV-1428179_1	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1428179_2	phrog_31	410.6	0	baseplate hub protein Tal	tail
UniRef90	UHGV-1428179_2	UniRef90_G5GM53	1138.0	0	Phage-tail_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1428179_2	679201.HMPREF9334_00334	1138.0	0	cellulase activity	N/A
Pfam	UHGV-1428179_2	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
Pfam	UHGV-1428179_2	PF09458	N/A	N/A	H-type lectin domain	H_lectin
COG	UHGV-1428179_2	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1428179_2	PF13550,PF00041,PF09294,PF17936,PF14109,NF040662,NF041335,COG4733	N/A	N/A	N/A	N/A
KOfam	UHGV-1428179_3	K13695	75.6	7.4e-22	nlpC; probable lipoprotein NlpC	N/A
PHROG	UHGV-1428179_3	phrog_329	75.0	7.8e-22	minor tail protein	tail
UniRef90	UHGV-1428179_3	UniRef90_G5GM52	191.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-1428179_3	679201.HMPREF9334_00333	191.0	0	NlpC/P60 family	N/A
Pfam	UHGV-1428179_3	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1428179_3	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1428179_3	PF00877,NF008096,COG3234	N/A	N/A	N/A	N/A
KOfam	UHGV-1428179_4	K00571	161.9	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1428179_4	phrog_67	174.3	0	DNA methyltransferase	other
UniRef90	UHGV-1428179_4	UniRef90_A0A7X7U6N1	241.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1428179_4	1474867.A0A076FIB3_9PHYC	229.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-1428179_4	MTase_II_00037	153.3	0	Type II methyltransferase	RM
Pfam	UHGV-1428179_4	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1428179_4	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_5	phrog_18	58.7	7.4e-17	minor tail protein	tail
UniRef90	UHGV-1428179_5	UniRef90_A0A4R3K4E0	220.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1428179_5	679201.HMPREF9334_00332	302.0	0	N/A	N/A
Pfam	UHGV-1428179_5	PF05100	N/A	N/A	Phage minor tail protein L	Phage_tail_L
COG	UHGV-1428179_5	COG4672	N/A	N/A	Phage tail protein	N/A
structural_annotation	UHGV-1428179_5	PF08875,TIGR01600,COG4672	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1428179_6	679201.HMPREF9334_00331	137.0	3.86999e-40	N/A	N/A
structural_annotation	UHGV-1428179_6	PF05939,TIGR02217,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_7	phrog_18863	142.5	2.90069e-42	N/A	unknown function
UniRef90	UHGV-1428179_7	UniRef90_A0A414NZU2	900.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1428179_7	679201.HMPREF9334_00330	546.0	0	tape measure	N/A
Pfam	UHGV-1428179_7	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-1428179_7	PF09718	N/A	N/A	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
COG	UHGV-1428179_7	COG4805	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1428179_7	TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_8	phrog_7377	61.6	1.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-1428179_8	679201.HMPREF9334_00329	72.8	0.00000000000000146	N/A	N/A
PHROG	UHGV-1428179_10	phrog_1407	114.7	5.4e-34	major tail protein	tail
UniRef90	UHGV-1428179_10	UniRef90_UPI0018C4BAA8	161.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-1428179_10	679201.HMPREF9334_00327	166.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1428179_10	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
COG	UHGV-1428179_10	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-1428179_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_11	phrog_176	48.4	1.6e-16	tail terminator	connector
UniRef90	UHGV-1428179_11	UniRef90_UPI0008DA5300	96.3	1.33e-22	N/A	N/A
eggNOG-mapper	UHGV-1428179_11	679201.HMPREF9334_00326	85.1	4.3e-19	N/A	N/A
Pfam	UHGV-1428179_11	PF11367	N/A	N/A	N/A	DUF3168
structural_annotation	UHGV-1428179_11	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_12	phrog_5	65.5	1.3e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-1428179_12	UniRef90_UPI0018C66872	123.0	2.11e-33	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1428179_12	861450.HMPREF0080_02051	84.3	8.67e-19	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1428179_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
COG	UHGV-1428179_12	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1428179_12	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_13	phrog_25	44.3	0.0000000000027	head closure Hc1	connector
UniRef90	UHGV-1428179_13	UniRef90_UPI0008DA6A88	63.9	0.0000000000524	phage head closure protein	N/A
eggNOG-mapper	UHGV-1428179_13	910314.HMPREF9220_1092	58.9	0.000000000787	Phage head-tail joining protein	N/A
Pfam	UHGV-1428179_13	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-1428179_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1428179_14	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-1428179_16	phrog_10	128.5	6.4e-38	major head protein	head and packaging
UniRef90	UHGV-1428179_16	UniRef90_A0A0U1L1V2	341.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1428179_16	1123288.SOV_2c03610	341.0	0	Phage capsid family	N/A
Pfam	UHGV-1428179_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1428179_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1428179_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1428179_17	K06904	133.2	2.4e-39	N/A	N/A
PHROG	UHGV-1428179_17	phrog_80	152.0	4.2039e-45	head maturation protease	head and packaging
UniRef90	UHGV-1428179_17	UniRef90_I0GRZ1	266.0	0	Putative phage prohead protease	N/A
eggNOG-mapper	UHGV-1428179_17	927704.SELR_18200	266.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1428179_17	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1428179_17	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1428179_17	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1428179_17	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_18	phrog_29023	160.8	0	N/A	unknown function
UniRef90	UHGV-1428179_18	UniRef90_I0GRZ2	540.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-1428179_18	927704.SELR_18210	540.0	0	Phage portal protein	N/A
Pfam	UHGV-1428179_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1428179_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1428179_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_19	phrog_9	300.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1428179_19	UniRef90_I0GRZ3	769.0	0	Putative phage terminase	N/A
eggNOG-mapper	UHGV-1428179_19	927704.SELR_18220	769.0	0	Phage Terminase	N/A
Pfam	UHGV-1428179_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1428179_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1428179_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1428179_19	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_20	phrog_1066	46.6	0.00000000000059	N/A	unknown function
UniRef90	UHGV-1428179_20	UniRef90_A0A316MDS1	107.0	5.27e-28	Zinc-binding protein	N/A
eggNOG-mapper	UHGV-1428179_20	1123288.SOV_2c03670	97.4	5.55e-25	N/A	N/A
structural_annotation	UHGV-1428179_20	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_21	phrog_4581	105.5	4.7e-31	terminase small subunit	head and packaging
UniRef90	UHGV-1428179_21	UniRef90_UPI001D0121F4	265.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1428179_21	927704.SELR_18240	261.0	0	adenylate kinase activity	N/A
Pfam	UHGV-1428179_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1428179_21	COG0563	N/A	N/A	Adenylate kinase or related kinase	N/A
structural_annotation	UHGV-1428179_21	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
KOfam	UHGV-1428179_22	K07474	85.7	9.4e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1428179_22	phrog_2606	140.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-1428179_22	UniRef90_C4Z826	165.0	0	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1428179_22	1120985.AUMI01000019_gene2239	119.0	1.85e-29	Terminase small subunit	N/A
Pfam	UHGV-1428179_22	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-1428179_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1428179_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1428179_22	PF03592,PF06056,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_24	phrog_36	67.6	2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1428179_24	UniRef90_UPI000DA60FA2	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-1428179_24	1392502.JNIO01000008_gene1304	186.0	0	DNA-templated transcription, initiation	N/A
COG	UHGV-1428179_24	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1428179_24	PF06530,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1428179_27	K03111	158.5	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1428179_27	phrog_44	157.3	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428179_27	UniRef90_I0GSV3	205.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1428179_27	927704.SELR_21320	205.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1428179_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1428179_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1428179_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1428179_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1428179_27	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1428179_33	K03497	90.7	2.6e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1428179_33	phrog_15982	155.5	0	N/A	unknown function
UniRef90	UHGV-1428179_33	UniRef90_UPI0004238EA6	258.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1428179_33	1280706.AUJE01000010_gene636	258.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1428179_33	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1428179_33	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1428179_33	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1428179_35	K03496	214.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1428179_35	phrog_164	171.7	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428179_35	UniRef90_A0A1H0P4D7	365.0	0	Chromosome partitioning protein	N/A
eggNOG-mapper	UHGV-1428179_35	1280706.AUJE01000010_gene635	360.0	0	AAA domain	N/A
Pfam	UHGV-1428179_35	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1428179_35	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1428179_35	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1428179_36	K03700	59.6	5.9e-17	recU; recombination protein U	N/A
PHROG	UHGV-1428179_36	phrog_843	121.6	4.5e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1428179_36	UniRef90_A0A1H0P4X6	198.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1428179_36	1392502.JNIO01000008_gene1290	211.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-1428179_36	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-1428179_36	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-1428179_36	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1428179_37	phrog_3584	115.7	3.3e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1428179_37	1392502.JNIO01000002_gene51	300.0	0	N/A	N/A
structural_annotation	UHGV-1428179_37	PF21578	N/A	N/A	N/A	N/A