UHGV-1429835 (vOTU-065810)

Viral Genome: UHGV-1429835

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1429835
vOTU ID	vOTU-065810
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0277984
Associated BioSample	SAMEA4545301
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.36 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.59
Jumbo phage	No

Genome content
Genome length (bp)	41,832
GC content	57.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	95%
Average CDS length (bps)	782.94
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1429835_1	phrog_156	321.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1429835_1	748224.HMPREF9436_01396	523.0	0	N/A	N/A
structural_annotation	UHGV-1429835_1	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1429835_2	K07584	65.9	7.3e-19	N/A	N/A
PHROG	UHGV-1429835_2	phrog_4478	69.3	4e-20	peptidase	other
UniRef90	UHGV-1429835_2	UniRef90_A0A8B3A5U6	56.2	0.0000000741	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1429835_2	1121289.JHVL01000002_gene2408	48.5	0.00000966	ribosomal protein	N/A
Pfam	UHGV-1429835_2	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1429835_2	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_3	phrog_13908	285.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1429835_3	1410650.JHWL01000003_gene2831	157.0	7.80523e-43	N/A	N/A
PHROG	UHGV-1429835_4	phrog_1357	285.9	0	major head protein	head and packaging
UniRef90	UHGV-1429835_4	UniRef90_A0A358AS35	460.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1429835_4	748224.HMPREF9436_02545	366.0	0	N/A	N/A
Pfam	UHGV-1429835_4	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1429835_4	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1429835_4	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_5	phrog_15239	74.4	1.1e-21	N/A	unknown function
PHROG	UHGV-1429835_6	phrog_12105	104.5	7.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-1429835_6	1226322.HMPREF1545_03850	59.7	0.0000000013	N/A	N/A
PHROG	UHGV-1429835_7	phrog_511	231.4	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1429835_7	1321782.HMPREF1986_00351	353.0	0	N/A	N/A
structural_annotation	UHGV-1429835_7	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_8	phrog_1980	51.5	0.0000000000000098	tail fiber protein	tail
eggNOG-mapper	UHGV-1429835_8	264462.Bd1712	63.2	0.0000000705	cell wall surface anchor family protein	N/A
Pfam	UHGV-1429835_8	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1429835_8	COG2911	N/A	N/A	Autotransporter translocation and assembly protein TamB	N/A
PHROG	UHGV-1429835_10	phrog_2649	67.9	7.1e-20	endolysin	lysis
UniRef90	UHGV-1429835_10	UniRef90_A0A358ARU4	243.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1429835_10	748224.HMPREF9436_02540	73.9	0.0000000000216	N/A	N/A
Pfam	UHGV-1429835_10	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-1429835_10	PF01471,TIGR02869,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_11	phrog_22978	611.3	0	N/A	unknown function
UniRef90	UHGV-1429835_11	UniRef90_R5G452	848.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1429835_11	1410650.JHWL01000003_gene2814	775.0	0	N/A	N/A
Pfam	UHGV-1429835_11	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-1429835_11	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
KOfam	UHGV-1429835_12	K16628	95.0	2.7e-28	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1429835_12	phrog_819	119.7	1.1e-35	tail protein	tail
eggNOG-mapper	UHGV-1429835_12	411459.RUMOBE_01721	55.8	0.00000748	N/A	N/A
Pfam	UHGV-1429835_12	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-1429835_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-1429835_15	1203606.HMPREF1526_01926	91.3	1.9e-20	N/A	N/A
Pfam	UHGV-1429835_15	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1429835_15	PF14600	N/A	N/A	N/A	N/A
UniRef90	UHGV-1429835_16	UniRef90_A0A136Q7S6	111.0	7.72e-26	Peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-1429835_16	755731.Clo1100_3432	75.9	0.000000000000892	NLP P60 protein	N/A
Pfam	UHGV-1429835_16	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1429835_16	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1429835_16	PF00877,PF18342,NF033742,COG0791,COG3103	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_17	phrog_7339	126.5	1.7e-37	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429835_17	UniRef90_A0A357WS36	282.0	0	Metallophos domain-containing protein	N/A
eggNOG-mapper	UHGV-1429835_17	1150474.JQJI01000006_gene784	89.7	1.85e-18	metallophosphoesterase	N/A
Pfam	UHGV-1429835_17	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-1429835_17	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-1429835_17	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_18	phrog_199	90.0	2.2e-26	holin	lysis
UniRef90	UHGV-1429835_18	UniRef90_A0A7X7I5M6	153.0	2.8026e-45	Phage holin family protein	N/A
eggNOG-mapper	UHGV-1429835_18	1567013.A0A0A7RTU1_9CAUD	110.0	4.6e-29	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-1429835_18	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1429835_18	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1429835_18	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1429835_24	K14059	215.3	0	int; integrase	N/A
PHROG	UHGV-1429835_24	phrog_1	183.8	0	integrase	integration and excision
UniRef90	UHGV-1429835_24	UniRef90_A0A1Q6PWD2	258.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1429835_24	1203606.HMPREF1526_00215	122.0	1.05e-28	Phage integrase family	N/A
Pfam	UHGV-1429835_24	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1429835_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1429835_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1429835_24	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1429835_25	1415774.U728_1278	56.2	0.00000066	domain protein	N/A
COG	UHGV-1429835_25	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-1429835_26	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1429835_28	K22300	49.2	0.00000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1429835_28	phrog_8	78.3	1.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1429835_28	UniRef90_UPI000C23851E	72.0	0.0000000000000816	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1429835_28	986075.CathTA2_2425	74.7	0.0000000000000011	Transcriptional	N/A
PADLOC	UHGV-1429835_28	retron_type_VI_hth_cluster2_1	40.1	0.000000000075	N/A	Retron
Pfam	UHGV-1429835_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1429835_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1429835_32	PF00412	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_33	phrog_434	314.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429835_33	UniRef90_A0A7X6XAG1	277.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1429835_33	857293.CAAU_0780	269.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1429835_33	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1429835_33	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1429835_33	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1429835_33	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1429835_34	K07455	163.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1429835_34	phrog_148	173.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429835_34	UniRef90_A0A354AUE2	322.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1429835_34	1196028.ALEF01000043_gene487	175.0	0	RecT family	N/A
Pfam	UHGV-1429835_34	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1429835_34	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1429835_34	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1429835_34	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1429835_36	K03111	138.0	9.79998e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1429835_36	phrog_44	126.3	2.3e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429835_36	UniRef90_A0A1Q6Q4S4	135.0	3.49e-38	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1429835_36	903814.ELI_4586	127.0	9.48e-36	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1429835_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1429835_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1429835_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1429835_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1429835_36	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_37	phrog_16304	91.4	1.3e-26	N/A	unknown function
UniRef90	UHGV-1429835_37	UniRef90_A0A417HNC3	117.0	5.2e-29	N/A	N/A
eggNOG-mapper	UHGV-1429835_37	537007.BLAHAN_04210	99.8	4.01e-22	HNH endonuclease	N/A
Pfam	UHGV-1429835_37	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1429835_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1429835_39	phrog_824	146.7	6.16571e-44	N/A	unknown function
UniRef90	UHGV-1429835_39	UniRef90_A0A645FWL0	153.0	1.4013e-45	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1429835_39	767434.Fraau_0982	123.0	8.78e-35	VRR-NUC domain	N/A
Pfam	UHGV-1429835_39	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-1429835_43	K21919	116.1	2.7e-34	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1429835_43	phrog_923	109.7	1.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-1429835_43	768710.DesyoDRAFT_5248	72.4	0.00000000000241	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-1429835_43	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
COG	UHGV-1429835_43	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1429835_43	PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-1429835_44	phrog_229	73.2	4.2e-21	MazG-like pyrophosphatase	other
UniRef90	UHGV-1429835_44	UniRef90_UPI00156E6FB9	125.0	3.27e-35	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-1429835_44	379066.GAU_2863	92.4	6.05e-23	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1429835_44	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1429835_44	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1429835_44	PF03819,MF_01020,NF001613,COG0140	N/A	N/A	N/A	N/A
KOfam	UHGV-1429835_45	K03465	94.0	1.8e-27	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-1429835_45	phrog_85	74.0	2.3e-21	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429835_45	UniRef90_A0A7W0CAH9	107.0	9.57e-27	Thymidylate synthase (FAD)	N/A
eggNOG-mapper	UHGV-1429835_45	665950.HMPREF1025_01363	113.0	8.97e-30	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-1429835_45	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-1429835_45	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
PHROG	UHGV-1429835_46	phrog_24386	269.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1429835_46	742740.HMPREF9474_02291	239.0	0	phosphatase activity	N/A
COG	UHGV-1429835_46	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A
Pfam	UHGV-1429835_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1429835_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1429835_50	K06909	140.7	1.19993e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1429835_50	phrog_979	147.6	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1429835_50	UniRef90_A0A3C0NMI6	578.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1429835_50	1410650.JHWL01000003_gene2834	577.0	0	N/A	N/A
Pfam	UHGV-1429835_50	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1429835_50	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1429835_50	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1429835_51	1410650.JHWL01000003_gene2833	54.7	0.000000214	N/A	N/A