UHGV-1435441 (vOTU-008371)

Viral Genome: UHGV-1435441

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1435441
vOTU ID	vOTU-008371
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0224148
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.66 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9767
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.51
Jumbo phage	No

Genome content
Genome length (bp)	32,249
GC content	39.65%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	93%
Average CDS length (bps)	669.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-1435441_1	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-1435441_2	phrog_1914	146.6	1.4013e-43	N/A	unknown function
UniRef90	UHGV-1435441_2	UniRef90_A0A374NDM7	358.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1435441_2	1160721.RBI_I01604	166.0	0	N/A	N/A
Pfam	UHGV-1435441_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1435441_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1435441_2	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435441_3	UniRef90_A0A373XLN2	274.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1435441_3	1235793.C809_00679	99.0	5.83e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1435441_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1435441_3	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435441_4	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1435441_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1435441_4	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_6	phrog_585	115.0	4.7e-34	N/A	unknown function
UniRef90	UHGV-1435441_6	UniRef90_UPI00051C896C	143.0	1.32997e-41	N/A	N/A
eggNOG-mapper	UHGV-1435441_6	1033744.CAEL01000029_gene1306	128.0	4.7e-36	N/A	N/A
Pfam	UHGV-1435441_6	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1435441_6	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
KOfam	UHGV-1435441_8	K00390	96.0	4e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1435441_8	phrog_424	121.5	6.2e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1435441_8	UniRef90_UPI001C034617	558.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1435441_8	1408437.JNJN01000032_gene2312	335.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1435441_8	BrxP_00001	82.0	2.6e-24	BrxP	BREX
Pfam	UHGV-1435441_8	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1435441_8	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1435441_8	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435441_9	UniRef90_UPI000E4DC4DA	136.0	3.11e-38	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1435441_9	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_10	phrog_599	44.1	0.0000000000041	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1435441_10	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1435441_10	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_11	phrog_6058	41.3	0.000000000017	N/A	unknown function
structural_annotation	UHGV-1435441_11	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1435441_14	K03497	158.4	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1435441_14	phrog_6218	243.9	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435441_14	UniRef90_A0A3D3D7T1	787.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1435441_14	445972.ANACOL_00162	238.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1435441_14	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1435441_14	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1435441_14	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-1435441_14	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1435441_15	K03427	45.0	0.0000000000012	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1435441_15	phrog_5696	239.3	0	N/A	unknown function
UniRef90	UHGV-1435441_15	UniRef90_UPI001B3C9C54	282.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1435441_15	397291.C804_06560	164.0	0	N-6 DNA Methylase	N/A
Pfam	UHGV-1435441_15	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1435441_15	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1435441_15	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_16	phrog_323	85.5	3.4e-28	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435441_16	UniRef90_UPI001C01CFF8	317.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1435441_16	394503.Ccel_3305	346.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-1435441_16	PF13921	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-bind_6
dbAPIS	UHGV-1435441_16	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1435441_16	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-1435441_17	K04763	211.5	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1435441_17	phrog_1	171.1	0	integrase	integration and excision
UniRef90	UHGV-1435441_17	UniRef90_UPI001B3C6404	369.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1435441_17	397291.C804_01139	231.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1435441_17	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1435441_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1435441_17	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1435441_17	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_18	phrog_24518	83.3	2.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-1435441_18	1519439.JPJG01000077_gene922	108.0	5.3e-27	N/A	N/A
PHROG	UHGV-1435441_19	phrog_824	144.7	2.8026e-43	N/A	unknown function
UniRef90	UHGV-1435441_19	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1435441_19	397288.C806_00096	159.0	0	VRR_NUC	N/A
Pfam	UHGV-1435441_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1435441_19	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_22	phrog_3584	147.9	6.44597e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1435441_22	1235800.C819_00515	70.9	0.00000000000973	N/A	N/A
structural_annotation	UHGV-1435441_22	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1435441_23	394503.Ccel_3053	51.6	0.00000214	N/A	N/A
structural_annotation	UHGV-1435441_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_24	phrog_119	69.1	6.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435441_24	UniRef90_A0A412ULY9	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1435441_24	1158607.UAU_01026	102.0	1.02e-26	HNH endonuclease	N/A
Pfam	UHGV-1435441_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1435441_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1435441_25	phrog_5110	81.7	5.9e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1435441_25	UniRef90_A0A1M5U1D5	112.0	4.85e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1435441_25	1211817.CCAT010000053_gene2128	99.8	6.32e-26	N/A	N/A
Pfam	UHGV-1435441_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1435441_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_26	phrog_9	287.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1435441_26	UniRef90_A0A412UM03	1049.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1435441_26	86416.Clopa_0337	617.0	0	Phage Terminase	N/A
Pfam	UHGV-1435441_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1435441_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1435441_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1435441_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_27	phrog_12	96.3	2.4e-28	portal protein	head and packaging
UniRef90	UHGV-1435441_27	UniRef90_A0A412ULV9	756.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1435441_27	1415774.U728_1254	260.0	0	Phage portal protein	N/A
Pfam	UHGV-1435441_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1435441_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1435441_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1435441_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1435441_28	K01358	138.4	6.79994e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1435441_28	phrog_94	206.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1435441_28	UniRef90_A0A412ULU1	464.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1435441_28	86416.Clopa_0340	170.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1435441_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1435441_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1435441_28	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_29	phrog_10	122.7	3.3e-36	major head protein	head and packaging
UniRef90	UHGV-1435441_29	UniRef90_A0A412ULW9	734.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1435441_29	1211817.CCAT010000053_gene2132	323.0	0	Phage capsid family	N/A
Pfam	UHGV-1435441_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1435441_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1435441_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1435441_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_30	phrog_749	54.9	0.0000000000000013	N/A	unknown function
UniRef90	UHGV-1435441_30	UniRef90_A0A1G5CMX8	106.0	6.11e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1435441_30	1211817.CCAT010000053_gene2133	57.0	0.00000000329	N/A	N/A
PHROG	UHGV-1435441_31	phrog_19734	72.1	6.5e-21	N/A	unknown function
UniRef90	UHGV-1435441_31	UniRef90_UPI00057FE645	58.2	0.0000000124	phage head closure protein	N/A
eggNOG-mapper	UHGV-1435441_31	86416.Clopa_0343	60.1	0.000000000446	N/A	N/A
NCBIFam	UHGV-1435441_31	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1435441_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1435441_32	272623.L59277	50.4	0.00000168	N/A	N/A
structural_annotation	UHGV-1435441_32	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435441_33	UniRef90_UPI000E5564A4	274.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1435441_33	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1435441_33	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_34	phrog_88	75.2	7.9e-22	major tail protein	tail
UniRef90	UHGV-1435441_34	UniRef90_A0A1G5CNS8	150.0	3.69943e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1435441_34	1321782.HMPREF1986_01362	65.5	0.00000000019	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1435441_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1435441_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435441_35	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1435441_37	K20283	56.1	4.5e-17	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1435441_37	phrog_1272	258.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1435441_37	UniRef90_A0A412ULX0	1607.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1435441_37	588581.Cpap_1264	201.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1435441_37	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1435441_37	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1435441_37	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_38	phrog_33	70.1	5.1e-20	distal tail protein Dit	tail
UniRef90	UHGV-1435441_38	UniRef90_R6GVG8	76.3	0.000000000000697	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-1435441_38	1160721.RBI_I01575	84.7	9.52e-17	Phage tail protein	N/A
COG	UHGV-1435441_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1435441_38	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_39	phrog_1067	101.8	7e-30	minor head protein	head and packaging
UniRef90	UHGV-1435441_39	UniRef90_A0A1G5CPD2	127.0	1.2e-29	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1435441_39	1462527.CCDM010000003_gene3730	73.2	0.0000000000509	gp58-like protein	N/A
NCBIFam	UHGV-1435441_39	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1435441_39	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435441_39	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435441_40	PF10651,PF01095	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_41	phrog_1863	72.2	5.7e-22	N/A	unknown function
UniRef90	UHGV-1435441_41	UniRef90_UPI001F223E8B	103.0	3.6e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1435441_41	1226322.HMPREF1545_04027	77.8	6.59e-18	N/A	N/A
PHROG	UHGV-1435441_42	phrog_443	65.0	1.8e-18	holin	lysis
UniRef90	UHGV-1435441_42	UniRef90_R6R2Q3	89.7	3.16e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1435441_42	1235797.C816_04172	83.2	2.13e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1435441_42	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1435441_42	PF16945	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435441_43	UniRef90_A0A2N0UI19	505.0	0	Putative peptidoglycan binding domain protein	N/A
Pfam	UHGV-1435441_43	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1435441_43	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-1435441_43	PF01471,TIGR02594,NF038080,COG3409,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-1435441_44	K07729	60.5	2.6e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1435441_44	phrog_8	44.0	0.0000000000036	transcriptional regulator	transcription regulation
Pfam	UHGV-1435441_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1435441_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1435441_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1435441_45	phrog_16123	67.1	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1435441_45	1064535.MELS_1123	89.4	8.45e-21	N/A	N/A