UHGV-1435966 (vOTU-070372)

Viral Genome: UHGV-1435966

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1435966
vOTU ID	vOTU-070372
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0255269
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.6
Jumbo phage	No

Genome content
Genome length (bp)	37,637
GC content	58.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	91%
Average CDS length (bps)	509.10
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-1435966_1	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1435966_2	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_3	phrog_10898	295.1	0	N/A	unknown function
UniRef90	UHGV-1435966_3	UniRef90_A0A7U3NJT3	193.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1435966_3	717606.PaecuDRAFT_2136	71.6	0.0000000000136	S-layer homology domain	N/A
COG	UHGV-1435966_3	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-1435966_3	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435966_5	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435966_6	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_7	phrog_26795	129.0	2.6e-38	N/A	unknown function
UniRef90	UHGV-1435966_7	UniRef90_A0A5J6T4K8	132.0	1.12e-31	Minor tail protein	N/A
eggNOG-mapper	UHGV-1435966_7	1195236.CTER_5102	133.0	6.75e-33	N/A	N/A
structural_annotation	UHGV-1435966_7	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_8	phrog_37549	74.6	1.3e-25	virion structural protein	head and packaging
UniRef90	UHGV-1435966_8	UniRef90_A0A3D0W045	209.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1435966_8	1195236.CTER_5103	124.0	2.02e-27	N/A	N/A
structural_annotation	UHGV-1435966_8	PF02010,PF06199,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_9	phrog_33680	142.9	1.90016e-42	N/A	unknown function
UniRef90	UHGV-1435966_9	UniRef90_UPI00098F054B	235.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1435966_9	1195236.CTER_5104	226.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1435966_9	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1435966_9	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435966_10	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_11	phrog_88	84.7	1.1e-24	major tail protein	tail
UniRef90	UHGV-1435966_11	UniRef90_S0FUN2	114.0	1.33e-28	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1435966_11	1195236.CTER_5106	114.0	2.23e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1435966_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1435966_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435966_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_12	phrog_5	42.8	0.00000000001	tail completion or Neck1 protein	connector
Pfam	UHGV-1435966_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1435966_12	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1435966_13	1487921.DP68_11350	58.9	0.000000000787	N/A	N/A
structural_annotation	UHGV-1435966_13	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_14	phrog_1951	74.5	1e-21	head-tail adaptor	connector
UniRef90	UHGV-1435966_14	UniRef90_UPI001B02B074	63.5	0.0000000000519	phage head closure protein	N/A
eggNOG-mapper	UHGV-1435966_14	1094508.Tsac_2422	53.9	0.0000000568	Phage head-tail joining protein	N/A
Pfam	UHGV-1435966_14	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1435966_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1435966_14	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1435966_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_15	phrog_5223	46.0	0.00000000000069	neck protein	connector
UniRef90	UHGV-1435966_15	UniRef90_B6W9Y5	61.6	0.000000000257	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-1435966_15	561177.ANHYDRO_01411	61.6	0.0000000000431	N/A	N/A
PHROG	UHGV-1435966_16	phrog_10	183.4	0	major head protein	head and packaging
UniRef90	UHGV-1435966_16	UniRef90_UPI00189AE5FE	406.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1435966_16	1280689.AUJC01000011_gene1521	391.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1435966_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1435966_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1435966_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1435966_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1435966_17	K01358	131.0	1.3e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1435966_17	phrog_94	200.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1435966_17	UniRef90_UPI0018979DC8	207.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1435966_17	1280689.AUJC01000011_gene1520	189.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1435966_17	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1435966_17	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1435966_17	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_18	phrog_12	179.7	0	portal protein	head and packaging
UniRef90	UHGV-1435966_18	UniRef90_UPI001898FCCE	503.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1435966_18	626523.GCWU000342_01027	502.0	0	Portal protein	N/A
Pfam	UHGV-1435966_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1435966_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1435966_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_19	phrog_9	390.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1435966_19	UniRef90_UPI001D07C789	790.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1435966_19	1203606.HMPREF1526_00981	749.0	0	Terminase	N/A
Pfam	UHGV-1435966_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1435966_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1435966_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1435966_19	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_20	phrog_1066	131.2	3.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-1435966_20	1382358.JHVN01000024_gene1703	122.0	1.93e-34	N/A	N/A
structural_annotation	UHGV-1435966_20	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_21	phrog_119	51.5	0.000000000000014	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435966_21	UniRef90_A0A174XSZ8	125.0	2.91e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-1435966_21	1235793.C809_01915	120.0	2.46e-33	HNH endonuclease	N/A
Pfam	UHGV-1435966_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1435966_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1435966_22	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-1435966_22	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_23	phrog_3584	118.9	3.9e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1435966_23	537013.CLOSTMETH_02141	72.8	0.000000000000674	N/A	N/A
structural_annotation	UHGV-1435966_23	PF21578,MF_00360	N/A	N/A	N/A	N/A
KOfam	UHGV-1435966_24	K07319	64.7	1.5e-18	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1435966_24	phrog_67	69.3	6.7e-20	DNA methyltransferase	other
UniRef90	UHGV-1435966_24	UniRef90_A0A413FXK5	135.0	4.68e-38	Methyltransferase	N/A
eggNOG-mapper	UHGV-1435966_24	1378168.N510_02840	117.0	7.01e-32	DNA methylase	N/A
PADLOC	UHGV-1435966_24	MTase_II_00172	72.1	1.7e-20	Type II methyltransferase	RM
Pfam	UHGV-1435966_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1435966_24	COG0863	N/A	N/A	DNA modification methylase	N/A
UniRef90	UHGV-1435966_25	UniRef90_UPI0018D56B0B	67.8	0.000000000000844	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1435966_25	1268240.ATFI01000007_gene431	74.7	0.00000000000000252	DNA methylase	N/A
COG	UHGV-1435966_25	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1435966_26	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_30	phrog_374	57.3	3.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1435966_30	60520.HR47_11980	67.4	0.00000000000321	N/A	N/A
PHROG	UHGV-1435966_32	phrog_190	100.3	1.9e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1435966_32	UniRef90_UPI0006C2AC63	127.0	1.75e-34	N/A	N/A
eggNOG-mapper	UHGV-1435966_32	693746.OBV_25250	119.0	3.28e-32	N/A	N/A
Pfam	UHGV-1435966_32	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1435966_32	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_34	phrog_38832	48.0	0.00000000000014	N/A	unknown function
PHROG	UHGV-1435966_35	phrog_3136	75.9	3.3e-32	N/A	unknown function
UniRef90	UHGV-1435966_35	UniRef90_A0A3D0HBD2	96.7	7.42e-23	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1435966_35	97139.C824_00742	63.9	0.0000000000358	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1435966_35	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1435966_35	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1435966_35	PF12961,NF002008,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_37	phrog_9298	60.1	3e-17	radical SAM domain protein	other
UniRef90	UHGV-1435966_37	UniRef90_A0A841L4D7	313.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-1435966_37	742738.HMPREF9460_03770	292.0	0	radical SAM domain protein	N/A
COG	UHGV-1435966_37	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1435966_37	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
KOfam	UHGV-1435966_38	K00558	155.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1435966_38	phrog_363	245.8	0	DNA methyltransferase	other
UniRef90	UHGV-1435966_38	UniRef90_G4KRB8	339.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1435966_38	693746.OBV_01900	339.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1435966_38	MTase_II_00058	119.8	1e-35	Type II methyltransferase	RM
Pfam	UHGV-1435966_38	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1435966_38	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1435966_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1435966_38	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435966_43	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1435966_45	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-1435966_48	K18830	55.7	0.0000000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1435966_48	phrog_8	55.8	7.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1435966_48	UniRef90_A0A2U1BEG8	126.0	3.51e-35	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1435966_48	445972.ANACOL_03315	112.0	1.4e-30	N/A	N/A
PADLOC	UHGV-1435966_48	retron_type_VI_hth_cluster2_1	41.4	0.000000000029	N/A	Retron
Pfam	UHGV-1435966_48	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1435966_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1435966_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-1435966_50	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-1435966_50	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_51	phrog_10292	75.3	3.6e-22	N/A	unknown function
UniRef90	UHGV-1435966_51	UniRef90_UPI00101CA94E	98.2	1.3e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1435966_51	1198452.Jab_1c20720	82.0	4.16e-18	TM2 domain	N/A
Pfam	UHGV-1435966_51	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1435966_51	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1435966_51	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-1435966_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-1435966_53	K06400	253.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1435966_53	phrog_95	264.5	0	integrase	integration and excision
UniRef90	UHGV-1435966_53	UniRef90_G9YSD9	416.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-1435966_53	1408437.JNJN01000002_gene1420	405.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1435966_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1435966_53	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1435966_53	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1435966_53	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1435966_53	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1435966_54	UniRef90_A0A8F0WD75	80.5	7.28e-16	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1435966_54	1378168.N510_03079	72.8	0.000000000000289	N/A	N/A
KOfam	UHGV-1435966_57	K19167	109.0	5.8e-32	abiQ; protein AbiQ	N/A
PHROG	UHGV-1435966_57	phrog_9764	116.2	2.3e-34	N/A	unknown function
UniRef90	UHGV-1435966_57	UniRef90_A0A845R8D8	214.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-1435966_57	1519439.JPJG01000060_gene1906	177.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-1435966_57	AbiQ	134.3	1.3e-39	AbiQ	Abi
Pfam	UHGV-1435966_57	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-1435966_57	PF13958	N/A	N/A	N/A	N/A
PHROG	UHGV-1435966_59	phrog_14030	153.4	1.4013e-45	N/A	unknown function
UniRef90	UHGV-1435966_59	UniRef90_R6LL81	268.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1435966_59	689781.AUJX01000056_gene2046	102.0	2.72e-23	N/A	N/A
PHROG	UHGV-1435966_60	phrog_6918	95.6	3.2e-28	holin	lysis
UniRef90	UHGV-1435966_60	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-1435966_60	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1435966_60	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1435966_60	PF09682,TIGR01673	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1435966_63	1519439.JPJG01000060_gene1895	81.3	0.00000000000000473	N/A	N/A
structural_annotation	UHGV-1435966_63	PF14600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1435966_66	1519439.JPJG01000060_gene1892	54.7	0.000000257	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1435966_66	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A