UHGV-1436288 (vOTU-027519)

Viral Genome: UHGV-1436288

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1436288
vOTU ID	vOTU-027519
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0207107
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.75 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.48
Jumbo phage	No

Genome content
Genome length (bp)	29,244
GC content	50.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	93%
Average CDS length (bps)	694.54
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1436288_1	K03572	43.3	0.0000000000036	mutL; DNA mismatch repair protein MutL	N/A
eggNOG-mapper	UHGV-1436288_1	411483.FAEPRAA2165_02407	72.4	0.0000000000000108	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	N/A
Pfam	UHGV-1436288_1	PF01119	N/A	N/A	DNA mismatch repair protein, C-terminal domain	DNA_mis_repair
COG	UHGV-1436288_1	COG0323	N/A	N/A	DNA mismatch repair ATPase MutL	N/A
KOfam	UHGV-1436288_2	K13525	90.0	8.6e-27	VCP, CDC48; transitional endoplasmic reticulum ATPase	N/A
PHROG	UHGV-1436288_2	phrog_3757	149.8	2.38221e-44	N/A	unknown function
UniRef90	UHGV-1436288_2	UniRef90_A0A4Z0Y6M2	214.0	0	ATP-dependent zinc metalloprotease FtsH 3	N/A
eggNOG-mapper	UHGV-1436288_2	1235802.C823_01035	124.0	2.61e-32	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-1436288_2	IetA_00002	133.9	3e-39	NA	ietAS
Pfam	UHGV-1436288_2	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-1436288_2	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-1436288_2	PF00004,MF_00553,NF003069,COG1222	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436288_3	NF010188	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1436288_4	1408437.JNJN01000043_gene801	87.0	2.04e-18	N/A	N/A
eggNOG-mapper	UHGV-1436288_5	1408437.JNJN01000043_gene802	121.0	6.41e-34	N/A	N/A
PHROG	UHGV-1436288_6	phrog_16490	99.7	2.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-1436288_6	658655.HMPREF0988_00917	115.0	9.58e-28	N/A	N/A
KOfam	UHGV-1436288_12	K24213	56.7	2.2e-16	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1436288_12	phrog_5073	70.4	1.8e-20	tail fiber protein	tail
UniRef90	UHGV-1436288_12	UniRef90_UPI0018835F0C	548.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1436288_12	411483.FAEPRAA2165_00757	176.0	0	N/A	N/A
Pfam	UHGV-1436288_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1436288_12	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_13	phrog_15303	118.9	2.1e-35	N/A	unknown function
Pfam	UHGV-1436288_13	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1436288_15	K07273	164.8	0	acm; lysozyme	N/A
PHROG	UHGV-1436288_15	phrog_291	116.6	2.3e-34	endolysin	lysis
UniRef90	UHGV-1436288_15	UniRef90_A0A564U0D3	430.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1436288_15	718252.FP2_04890	260.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1436288_15	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1436288_15	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1436288_15	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_16	phrog_28526	95.0	3.6e-28	N/A	unknown function
UniRef90	UHGV-1436288_16	UniRef90_UPI00156FE2AD	72.4	6.83e-16	N/A	N/A
eggNOG-mapper	UHGV-1436288_16	748224.HMPREF9436_00155	95.1	1.12e-25	N/A	N/A
PHROG	UHGV-1436288_18	phrog_9534	53.9	0.0000000000000027	head protein	head and packaging
eggNOG-mapper	UHGV-1436288_18	748224.HMPREF9436_00405	175.0	0	domain, Protein	N/A
COG	UHGV-1436288_18	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_19	phrog_18725	73.8	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1436288_19	1226322.HMPREF1545_00062	88.2	6.04e-20	N/A	N/A
PHROG	UHGV-1436288_20	phrog_13879	233.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1436288_20	1122919.KB905559_gene1344	159.0	1.28e-38	N/A	N/A
Pfam	UHGV-1436288_20	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1436288_20	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_21	phrog_1194	79.9	2.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-1436288_21	1007103.AFHW01000096_gene3257	51.6	0.00000105	N/A	N/A
Pfam	UHGV-1436288_21	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1436288_21	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_22	phrog_1535	141.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1436288_22	1121866.AUGK01000003_gene1437	217.0	0	phage tail tape measure protein	N/A
COG	UHGV-1436288_22	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-1436288_23	1121333.JMLH01000047_gene1011	76.3	8e-16	N/A	N/A
eggNOG-mapper	UHGV-1436288_24	1123263.AUKY01000015_gene1618	58.9	0.00000000108	N/A	N/A
Pfam	UHGV-1436288_24	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1436288_24	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_25	phrog_158	44.8	0.0000000000021	major tail protein	tail
UniRef90	UHGV-1436288_25	UniRef90_UPI001D087591	115.0	1.76e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-1436288_25	1449343.JQLQ01000002_gene1514	53.5	0.000000776	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1436288_25	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436288_26	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1436288_27	397290.C810_01411	52.4	0.00000498	N/A	N/A
eggNOG-mapper	UHGV-1436288_28	1298920.KI911353_gene2656	55.1	0.0000000789	N/A	N/A
structural_annotation	UHGV-1436288_28	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1436288_29	UniRef90_R6N215	81.6	7.46e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-1436288_29	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_30	phrog_29	182.3	0	major head protein	head and packaging
UniRef90	UHGV-1436288_30	UniRef90_A0A2Z4QBB4	372.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1436288_30	1347368.HG964404_gene4993	259.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1436288_30	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1436288_30	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_31	phrog_909	40.5	0.000000000036	major head protein	head and packaging
PHROG	UHGV-1436288_33	phrog_64	151.8	2.8026e-45	portal protein	head and packaging
UniRef90	UHGV-1436288_33	UniRef90_A0A371ILT4	337.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1436288_33	1121866.AUGK01000003_gene1429	284.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1436288_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1436288_33	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1436288_36	phrog_38	178.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1436288_36	UniRef90_UPI000419A6BC	427.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1436288_36	1121866.AUGK01000003_gene1428	427.0	0	chromosome segregation	N/A
COG	UHGV-1436288_36	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436288_36	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-1436288_37	K14415	323.3	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1436288_37	phrog_1075	436.6	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436288_37	UniRef90_UPI00067F3ABF	473.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-1436288_37	1211844.CBLM010000044_gene358	472.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1436288_37	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1436288_37	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1436288_37	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
KOfam	UHGV-1436288_38	K14060	126.6	2.5e-37	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1436288_38	phrog_125	156.4	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436288_38	UniRef90_A0A3D0LYX8	212.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1436288_38	1410633.JHWR01000012_gene95	192.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1436288_38	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1436288_38	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1436288_38	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436288_39	PF20075	N/A	N/A	N/A	N/A