UHGV-1436399 (vOTU-016744)

Viral Genome: UHGV-1436399

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1436399
vOTU ID	vOTU-016744
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0206683
Associated BioSample	SAMD00036201
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.49 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.09
Jumbo phage	No

Genome content
Genome length (bp)	29,172
GC content	49.57%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	89%
Average CDS length (bps)	605.79
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1436399_1	411902.CLOBOL_00121	96.3	4.03e-23	nuclear chromosome segregation	N/A
COG	UHGV-1436399_1	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-1436399_3	742733.HMPREF9469_00968	112.0	4.28e-31	N/A	N/A
eggNOG-mapper	UHGV-1436399_5	411902.CLOBOL_00122	280.0	0	N/A	N/A
PHROG	UHGV-1436399_6	phrog_18725	41.5	0.000000000022	N/A	unknown function
eggNOG-mapper	UHGV-1436399_6	411902.CLOBOL_00123	175.0	0	N/A	N/A
PHROG	UHGV-1436399_7	phrog_13879	208.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1436399_7	411902.CLOBOL_00124	1367.0	0	N/A	N/A
structural_annotation	UHGV-1436399_7	PF14594,PF21114,MF_00813,NF033848,TIGR02961,COG4379,COG4266	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_8	phrog_1194	47.3	0.0000000000003	N/A	unknown function
eggNOG-mapper	UHGV-1436399_8	411902.CLOBOL_00125	270.0	0	N/A	N/A
structural_annotation	UHGV-1436399_8	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_9	phrog_1535	46.2	0.00000000000026	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1436399_9	411902.CLOBOL_00126	941.0	0	N/A	N/A
COG	UHGV-1436399_9	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1436399_10	phrog_1535	194.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1436399_10	411902.CLOBOL_00126	1137.0	0	N/A	N/A
COG	UHGV-1436399_10	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1436399_11	phrog_706	137.4	8.80001e-41	N/A	unknown function
UniRef90	UHGV-1436399_11	UniRef90_A0A0F0CE18	351.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1436399_11	411902.CLOBOL_00127	367.0	0	N/A	N/A
Pfam	UHGV-1436399_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1436399_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_12	phrog_11299	77.3	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-1436399_12	411902.CLOBOL_00128	284.0	0	N/A	N/A
PHROG	UHGV-1436399_13	phrog_3099	162.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1436399_13	411902.CLOBOL_00129	348.0	0	N/A	N/A
structural_annotation	UHGV-1436399_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_14	phrog_3266	114.9	4.3e-34	tail completion	connector
eggNOG-mapper	UHGV-1436399_14	411902.CLOBOL_00130	289.0	0	N/A	N/A
structural_annotation	UHGV-1436399_14	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_15	phrog_556	90.1	8.7e-27	minor head protein	head and packaging
UniRef90	UHGV-1436399_15	UniRef90_UPI000E44F835	241.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1436399_15	411902.CLOBOL_00131	282.0	0	Minor capsid protein	N/A
Pfam	UHGV-1436399_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1436399_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_16	phrog_3366	75.2	6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1436399_16	411902.CLOBOL_00132	248.0	0	N/A	N/A
Pfam	UHGV-1436399_16	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1436399_16	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1436399_17	411902.CLOBOL_00133	120.0	5.11e-34	N/A	N/A
eggNOG-mapper	UHGV-1436399_19	411902.CLOBOL_00134	229.0	0	Phage capsid family	N/A
Pfam	UHGV-1436399_19	PF08308	N/A	N/A	PEGA domain	PEGA
COG	UHGV-1436399_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
PHROG	UHGV-1436399_20	phrog_10	146.7	1.79366e-43	major head protein	head and packaging
UniRef90	UHGV-1436399_20	UniRef90_UPI000E438149	495.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1436399_20	411902.CLOBOL_00134	518.0	0	Phage capsid family	N/A
Pfam	UHGV-1436399_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1436399_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1436399_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1436399_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_21	phrog_194	99.4	4.2e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1436399_21	UniRef90_C0CSR8	298.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1436399_21	411902.CLOBOL_00135	331.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1436399_21	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1436399_21	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_24	phrog_581	302.0	0	minor head protein	head and packaging
UniRef90	UHGV-1436399_24	UniRef90_UPI001106F6CE	692.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1436399_24	411902.CLOBOL_00137	730.0	0	N/A	N/A
Pfam	UHGV-1436399_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1436399_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436399_24	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_25	phrog_533	395.9	0	portal protein	head and packaging
UniRef90	UHGV-1436399_25	UniRef90_UPI0011062C56	731.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1436399_25	411902.CLOBOL_00138	807.0	0	N/A	N/A
Pfam	UHGV-1436399_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1436399_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1436399_26	411902.CLOBOL_00138	101.0	8.94e-25	N/A	N/A
KOfam	UHGV-1436399_27	K06909	64.8	1.2e-18	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1436399_27	phrog_2	90.9	2.3e-26	terminase large subunit	head and packaging
UniRef90	UHGV-1436399_27	UniRef90_A0A352BM03	815.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1436399_27	411902.CLOBOL_00139	928.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1436399_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1436399_27	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_28	phrog_509	289.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-1436399_28	UniRef90_R0CLX0	424.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1436399_28	411902.CLOBOL_00140	330.0	0	DNA packaging	N/A
Pfam	UHGV-1436399_28	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-1436399_28	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-1436399_28	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436399_28	NF040601,COG5484	N/A	N/A	N/A	N/A
UniRef90	UHGV-1436399_29	UniRef90_UPI000C75C6BE	58.2	0.000000475	SLATT domain-containing protein	N/A
PADLOC	UHGV-1436399_29	drt-cluster7	44.6	0.0000000000012	DRT	DRT
Pfam	UHGV-1436399_29	PF18160	N/A	N/A	SMODS and SLOG-associating 2TM effector domain family 5	SLATT_5
PHROG	UHGV-1436399_30	phrog_1558	153.5	1.4013e-45	N/A	unknown function
UniRef90	UHGV-1436399_30	UniRef90_UPI001D077CB1	371.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1436399_30	1163671.JAGI01000002_gene3057	175.0	0	N/A	N/A
structural_annotation	UHGV-1436399_30	PF13613,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436399_38	PF16535,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-1436399_39	K14440	97.5	1.4e-29	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1436399_39	phrog_62	393.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436399_39	UniRef90_A8RGI9	908.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1436399_39	411902.CLOBOL_00156	908.0	0	COG COG0553 Superfamily II DNA RNA helicases, SNF2 family	N/A
PADLOC	UHGV-1436399_39	DpdE_00010	60.7	8.9e-18	DpdE	DPD
Pfam	UHGV-1436399_39	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1436399_39	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1436399_39	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1436399_39	PF16203,PF04851,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_40	phrog_93	65.6	7.8e-19	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436399_40	UniRef90_A8RGJ0	189.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1436399_40	411902.CLOBOL_00157	189.0	0	COG NOG18350 non supervised orthologous group	N/A
structural_annotation	UHGV-1436399_40	PF01974,MF_01490,NF011269	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_41	phrog_256	764.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436399_41	UniRef90_A0A174FV99	929.0	0	Predicted P-loop ATPase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-1436399_41	411902.CLOBOL_02544	1194.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1436399_41	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1436399_41	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1436399_41	PF05272,NF011296,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-1436399_42	phrog_256	255.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436399_42	UniRef90_I7KTD7	205.0	0	DNA primase, phage associated	N/A
eggNOG-mapper	UHGV-1436399_42	411902.CLOBOL_02544	377.0	0	Virulence-associated protein E	N/A
COG	UHGV-1436399_42	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1436399_42	PF03090,NF040562	N/A	N/A	N/A	N/A
KOfam	UHGV-1436399_43	K02334	187.2	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-1436399_43	phrog_7766	173.5	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436399_43	UniRef90_A0A1G4TXV9	137.0	1.95e-38	DNA polymerase	N/A
eggNOG-mapper	UHGV-1436399_43	411902.CLOBOL_02545	271.0	0	COG COG0749 DNA polymerase I - 3-5 exonuclease and polymerase domains	N/A
COG	UHGV-1436399_43	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A