UHGV-1436876 (vOTU-140315)

Viral Genome: UHGV-1436876

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1436876
vOTU ID	vOTU-140315
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0147364
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.54 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.77
Jumbo phage	No

Genome content
Genome length (bp)	20,153
GC content	39.89%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	31
CDS density	94%
Average CDS length (bps)	609.97
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1436876_3	UniRef90_A0A2N0ULT9	135.0	1.72e-40	DNA binding domain, excisionase family	N/A
Pfam	UHGV-1436876_3	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1436876_3	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1436876_3	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-1436876_3	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1436876_6	K03497	151.9	1.4013e-45	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1436876_6	phrog_6218	244.4	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436876_6	UniRef90_UPI000E47CAB6	538.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-1436876_6	394503.Ccel_3306	255.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-1436876_6	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1436876_6	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1436876_6	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-1436876_6	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_7	phrog_8684	99.7	4.8e-30	N/A	unknown function
UniRef90	UHGV-1436876_7	UniRef90_UPI000E48855B	218.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1436876_7	1450694.BTS2_0501	83.6	6.36e-19	YopX protein	N/A
Pfam	UHGV-1436876_7	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1436876_7	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1436876_7	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_8	phrog_6058	42.6	0.0000000000064	N/A	unknown function
eggNOG-mapper	UHGV-1436876_8	742738.HMPREF9460_00848	49.3	0.00000338	N/A	N/A
structural_annotation	UHGV-1436876_8	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436876_10	PF19678,TIGR02610	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_13	phrog_3584	140.6	1.10002e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1436876_13	1235800.C819_00515	72.4	0.00000000000271	N/A	N/A
structural_annotation	UHGV-1436876_13	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_14	phrog_31049	41.0	0.00000000000026	N/A	unknown function
eggNOG-mapper	UHGV-1436876_14	394503.Ccel_3053	58.2	0.0000000066	N/A	N/A
structural_annotation	UHGV-1436876_14	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_15	phrog_119	72.9	4.3e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436876_15	UniRef90_A0A373XNZ9	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1436876_15	500633.CLOHIR_00362	119.0	7.08e-34	HNH endonuclease	N/A
Pfam	UHGV-1436876_15	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1436876_15	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1436876_16	phrog_1066	60.8	1.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1436876_16	931276.Cspa_c10130	67.8	0.000000000000925	N/A	N/A
PHROG	UHGV-1436876_17	phrog_9	311.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1436876_17	UniRef90_A0A373XNY0	1056.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1436876_17	411468.CLOSCI_00551	682.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-1436876_17	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1436876_17	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1436876_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1436876_17	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_18	phrog_12	173.8	0	portal protein	head and packaging
UniRef90	UHGV-1436876_18	UniRef90_A0A373XNZ6	781.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1436876_18	411468.CLOSCI_00550	402.0	0	Phage portal protein	N/A
Pfam	UHGV-1436876_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1436876_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1436876_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1436876_19	K01358	152.5	2.8026e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1436876_19	phrog_94	238.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1436876_19	UniRef90_A0A373XPG0	464.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1436876_19	1396.DJ87_978	251.0	0	Clp protease	N/A
Pfam	UHGV-1436876_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1436876_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1436876_19	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_20	phrog_10	128.6	6e-38	major head protein	head and packaging
UniRef90	UHGV-1436876_20	UniRef90_A0A373XLR3	732.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1436876_20	411468.CLOSCI_00548	375.0	0	Phage capsid family	N/A
Pfam	UHGV-1436876_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1436876_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1436876_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_21	phrog_5223	55.1	9.8e-16	neck protein	connector
UniRef90	UHGV-1436876_21	UniRef90_A0A174XIL0	94.7	2.44e-23	N/A	N/A
eggNOG-mapper	UHGV-1436876_21	411468.CLOSCI_00547	92.0	4.74e-23	N/A	N/A
PHROG	UHGV-1436876_22	phrog_1951	98.0	5.2e-29	head-tail adaptor	connector
UniRef90	UHGV-1436876_22	UniRef90_A0A373XMG4	213.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1436876_22	1536769.P40081_01090	67.8	0.000000000000282	head-tail adaptor	N/A
NCBIFam	UHGV-1436876_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1436876_22	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1436876_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1436876_23	UniRef90_UPI001A9B6FBF	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1436876_23	1414720.CBYM010000040_gene1650	133.0	5.49e-38	N/A	N/A
Pfam	UHGV-1436876_23	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1436876_23	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1436876_23	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436876_24	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_25	phrog_885	131.5	5.3e-39	major tail protein	tail
UniRef90	UHGV-1436876_25	UniRef90_A0A101Y2E4	161.0	1.4013e-45	Big_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1436876_25	1321814.HMPREF9089_00935	172.0	0	N/A	N/A
structural_annotation	UHGV-1436876_25	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_26	phrog_1021	50.8	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1436876_26	1321778.HMPREF1982_03556	52.4	0.000000521	N/A	N/A
PHROG	UHGV-1436876_28	phrog_991	154.3	1.4013e-45	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1436876_28	457396.CSBG_01057	262.0	0	tape measure	N/A
COG	UHGV-1436876_28	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1436876_28	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_29	phrog_33	54.2	0.0000000000000036	distal tail protein Dit	tail
UniRef90	UHGV-1436876_29	UniRef90_A0A1G5CPA2	115.0	1.59e-27	Phage-related protein	N/A
eggNOG-mapper	UHGV-1436876_29	1246.JMEA01000006_gene51	72.4	0.00000000000256	phage tail	N/A
COG	UHGV-1436876_29	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1436876_29	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1436876_30	phrog_1067	134.2	8.5e-40	minor head protein	head and packaging
UniRef90	UHGV-1436876_30	UniRef90_A0A348ZBV6	174.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1436876_30	1160721.RBI_I01574	122.0	2.3e-27	Prophage endopeptidase tail	N/A
Pfam	UHGV-1436876_30	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1436876_30	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1436876_30	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1436876_30	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1436876_31	UniRef90_A0A374N9Y2	396.0	0	N/A	N/A
Pfam	UHGV-1436876_31	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1436876_31	PF10651,NF040788	N/A	N/A	N/A	N/A