UHGV-1437747 (vOTU-025236)

Viral Genome: UHGV-1437747

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1437747
vOTU ID	vOTU-025236
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0223868
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.97 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9708
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.87
Jumbo phage	No

Genome content
Genome length (bp)	32,206
GC content	35.82%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	90%
Average CDS length (bps)	526.58
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1437747_1	K06400	299.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1437747_1	phrog_95	303.9	0	integrase	integration and excision
UniRef90	UHGV-1437747_1	UniRef90_UPI00189B90C5	276.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1437747_1	357809.Cphy_2997	214.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-1437747_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1437747_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1437747_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1437747_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1437747_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_2	phrog_30113	96.2	3.7e-28	N/A	unknown function
UniRef90	UHGV-1437747_2	UniRef90_A0A356K491	202.0	0	4Fe-4S ferredoxin-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1437747_2	1302863.I872_10475	139.0	5.44e-38	N/A	N/A
Pfam	UHGV-1437747_2	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-1437747_2	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
KOfam	UHGV-1437747_3	K01356	104.4	1.7e-30	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1437747_3	phrog_4	125.6	4.1e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-1437747_3	UniRef90_D4JEI4	306.0	0	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-1437747_3	706433.HMPREF9430_01295	271.0	0	N/A	N/A
PADLOC	UHGV-1437747_3	retron_type_VI_hth_cluster2_1	41.0	0.00000000004	N/A	Retron
Pfam	UHGV-1437747_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1437747_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1437747_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1437747_3	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1437747_4	K07729	63.0	6.5e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1437747_4	phrog_8	57.8	2.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1437747_4	UniRef90_A0A134AEM6	70.5	0.0000000000000127	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1437747_4	1280689.AUJC01000011_gene1494	60.5	0.000000000056	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1437747_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1437747_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1437747_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1437747_5	K07729	47.0	0.00000000000051	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1437747_5	phrog_8	43.7	0.0000000000061	transcriptional regulator	transcription regulation
UniRef90	UHGV-1437747_5	UniRef90_UPI001D01DA20	84.3	4.03e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1437747_5	272563.CD630_09071	68.9	0.00000000000000546	sequence-specific DNA binding	N/A
PADLOC	UHGV-1437747_5	retron_type_VI_hth_cluster2_1	43.8	0.0000000000077	N/A	Retron
Pfam	UHGV-1437747_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1437747_5	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-1437747_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_11	phrog_15768	95.1	8.7e-28	N/A	unknown function
UniRef90	UHGV-1437747_11	UniRef90_UPI000F8C6244	85.5	1.72e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1437747_11	642492.Clole_0798	93.6	4.99e-20	N/A	N/A
Pfam	UHGV-1437747_11	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1437747_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1437747_11	PF20024,MF_01819,NF038251,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1437747_12	K02314	157.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1437747_12	phrog_19	183.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1437747_12	UniRef90_A0A223MJF7	274.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1437747_12	1232449.BAHV02000016_gene1835	226.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1437747_12	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1437747_12	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1437747_12	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1437747_14	K04763	165.0	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1437747_14	phrog_1	129.1	4.2e-38	integrase	integration and excision
UniRef90	UHGV-1437747_14	UniRef90_A0A395W9T7	301.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1437747_14	999413.HMPREF1094_02021	193.0	0	Phage integrase family	N/A
Pfam	UHGV-1437747_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1437747_14	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1437747_14	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1437747_16	PF18300,MF_00085,NF003076	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1437747_18	COG0490	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_19	phrog_15198	43.6	0.0000000000038	N/A	unknown function
UniRef90	UHGV-1437747_19	UniRef90_A0A1Y4LYN3	126.0	1.11e-35	N/A	N/A
Pfam	UHGV-1437747_19	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1437747_23	K03111	130.6	1.9e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1437747_23	phrog_44	134.6	6.7e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1437747_23	UniRef90_A0A374RM86	165.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1437747_23	518637.EUBIFOR_00985	165.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1437747_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1437747_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1437747_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1437747_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1437747_23	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_25	phrog_478	134.0	5e-40	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1437747_25	UniRef90_A0A0U2WUA4	171.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1437747_25	665956.HMPREF1032_03082	184.0	0	N/A	N/A
UniRef90	UHGV-1437747_28	UniRef90_A0A3E3ABQ3	69.3	0.0000000000327	HNH endonuclease	N/A
structural_annotation	UHGV-1437747_28	PF13392,PF07453	N/A	N/A	N/A	N/A
UniRef90	UHGV-1437747_32	UniRef90_A0A413UEX6	79.0	0.00000000000000102	N/A	N/A
Pfam	UHGV-1437747_32	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1437747_32	PF07374,NF008895	N/A	N/A	N/A	N/A
UniRef90	UHGV-1437747_33	UniRef90_A0A3E3ADS4	119.0	2.83e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1437747_33	1232446.BAIE02000002_gene820	119.0	4.74e-34	HNH nucleases	N/A
COG	UHGV-1437747_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1437747_35	phrog_361	51.1	0.0000000000000034	terminase small subunit	head and packaging
UniRef90	UHGV-1437747_35	UniRef90_A0A3E3E594	133.0	4.69e-38	Terminase	N/A
eggNOG-mapper	UHGV-1437747_35	1235798.C817_04581	80.9	4.74e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-1437747_35	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-1437747_36	phrog_9	307.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1437747_36	UniRef90_A0A1Y4LY94	1164.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1437747_36	1232446.BAIE02000002_gene823	903.0	0	Phage Terminase	N/A
Pfam	UHGV-1437747_36	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1437747_36	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1437747_36	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1437747_36	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_37	phrog_12	170.7	0	portal protein	head and packaging
UniRef90	UHGV-1437747_37	UniRef90_A0A1Y4M075	779.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1437747_37	1232446.BAIE02000002_gene824	545.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1437747_37	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1437747_37	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1437747_37	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1437747_37	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1437747_38	K06904	152.3	4.2039e-45	N/A	N/A
PHROG	UHGV-1437747_38	phrog_80	176.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1437747_38	UniRef90_A0A1Y4LTW2	373.0	0	Phage prohead protease	N/A
eggNOG-mapper	UHGV-1437747_38	398512.JQKC01000009_gene450	252.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1437747_38	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1437747_38	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1437747_38	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1437747_38	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_39	phrog_10	168.1	0	major head protein	head and packaging
UniRef90	UHGV-1437747_39	UniRef90_A0A1Y4LTW7	919.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1437747_39	999413.HMPREF1094_02008	435.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1437747_39	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1437747_39	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1437747_39	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1437747_39	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_40	phrog_2550	65.1	6.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1437747_40	1232446.BAIE02000002_gene827	96.7	4.14e-25	N/A	N/A
structural_annotation	UHGV-1437747_40	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_41	phrog_19734	87.9	1.1e-25	N/A	unknown function
UniRef90	UHGV-1437747_41	UniRef90_A0A3E3E563	144.0	2.29953e-42	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1437747_41	1232446.BAIE02000002_gene828	98.2	4.74e-25	N/A	N/A
structural_annotation	UHGV-1437747_41	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_42	phrog_78	54.2	0.0000000000000027	tail terminator	connector
eggNOG-mapper	UHGV-1437747_42	1232446.BAIE02000002_gene829	92.0	1.03e-22	N/A	N/A
structural_annotation	UHGV-1437747_42	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1437747_43	1232446.BAIE02000002_gene830	101.0	5.07e-25	N/A	N/A
structural_annotation	UHGV-1437747_43	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_44	phrog_88	78.0	9e-23	major tail protein	tail
UniRef90	UHGV-1437747_44	UniRef90_A0A3E3E439	223.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1437747_44	33035.JPJF01000039_gene278	129.0	6.63e-35	N/A	N/A
structural_annotation	UHGV-1437747_44	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_46	phrog_23464	205.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1437747_46	33035.JPJF01000023_gene3232	291.0	0	phage tail tape measure protein	N/A
COG	UHGV-1437747_46	COG5412	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-1437747_47	UniRef90_A0A3E3E586	283.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1437747_47	1232446.BAIE02000002_gene835	203.0	0	phage tail	N/A
NCBIFam	UHGV-1437747_47	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1437747_47	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1437747_47	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_48	phrog_1067	299.3	0	minor head protein	head and packaging
UniRef90	UHGV-1437747_48	UniRef90_A0A1Y4LTX2	821.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1437747_48	1232446.BAIE02000002_gene836	469.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1437747_48	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1437747_48	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1437747_48	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1437747_48	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_49	phrog_8781	50.8	0.000000000000031	endolysin	lysis
UniRef90	UHGV-1437747_49	UniRef90_A0A4V0ET45	105.0	4.87e-25	Phage lysin, N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1437747_49	552396.HMPREF0863_01651	99.4	1.78e-23	lysozyme activity	N/A
COG	UHGV-1437747_49	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1437747_49	PF05382,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_51	phrog_19695	55.4	0.0000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-1437747_51	411462.DORLON_00772	79.3	6.67e-18	N/A	N/A
structural_annotation	UHGV-1437747_51	PF19714	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1437747_52	1232452.BAIB02000007_gene1610	162.0	0	N/A	N/A
structural_annotation	UHGV-1437747_52	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1437747_53	phrog_3904	64.7	8e-19	tail fiber protein	tail
UniRef90	UHGV-1437747_53	UniRef90_A0A3E3E4F9	161.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-1437747_53	1151292.QEW_0665	52.4	0.00000776	N/A	N/A
KOfam	UHGV-1437747_54	K16628	53.7	7.9e-16	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1437747_54	phrog_6320	51.8	9.2e-19	tail fiber protein	tail
UniRef90	UHGV-1437747_54	UniRef90_UPI001431967E	89.7	1.05e-18	collagen-like protein	N/A
Pfam	UHGV-1437747_54	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1437747_55	phrog_24267	59.3	8.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-1437747_55	1141137.K4F7V9_9CAUD	70.1	0.000000000000165	N-acetylmuramoyl-L-alanine amidase activity	N/A