UHGV-1441622 (vOTU-104707)

Viral Genome: UHGV-1441622

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1441622
vOTU ID	vOTU-104707
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0224493
Associated BioSample	SAMEA3879552
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.11 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.96
Jumbo phage	No

Genome content
Genome length (bp)	32,310
GC content	39.27%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	96%
Average CDS length (bps)	629.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1441622_1	K18830	56.0	8.9e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1441622_1	phrog_8	69.8	5.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1441622_1	UniRef90_A0A4R3L152	83.2	2.93e-18	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1441622_1	706433.HMPREF9430_01295	127.0	4.81e-35	N/A	N/A
PADLOC	UHGV-1441622_1	retron_type_VI_hth_cluster2_1	43.4	0.0000000000074	N/A	Retron
Pfam	UHGV-1441622_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1441622_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-1441622_2	K07729	63.0	6e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1441622_2	phrog_8	57.8	2.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1441622_2	UniRef90_A0A134AEM6	70.5	0.0000000000000127	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1441622_2	1280689.AUJC01000011_gene1494	60.5	0.000000000056	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1441622_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1441622_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1441622_2	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_6	phrog_6058	59.4	3.7e-17	N/A	unknown function
UniRef90	UHGV-1441622_6	UniRef90_A0A0V8QBN7	70.5	0.0000000000000419	Histone-lysine N-methyltransferase	N/A
eggNOG-mapper	UHGV-1441622_6	658088.HMPREF0987_00666	73.6	3.58e-16	N/A	N/A
structural_annotation	UHGV-1441622_6	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-1441622_9	K03546	61.9	6.9e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1441622_9	phrog_1499	458.5	0	N/A	unknown function
UniRef90	UHGV-1441622_9	UniRef90_A0A1Y4LTU2	825.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-1441622_9	552396.HMPREF0863_02439	494.0	0	AAA ATPase domain	N/A
Pfam	UHGV-1441622_9	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1441622_9	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1441622_9	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_10	phrog_124	237.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441622_10	UniRef90_UPI0009337475	385.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1441622_10	999413.HMPREF1094_00235	409.0	0	AAA domain	N/A
Pfam	UHGV-1441622_10	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1441622_10	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_11	phrog_2698	139.5	1.10002e-41	N/A	unknown function
UniRef90	UHGV-1441622_11	UniRef90_A0A1Y4QVI7	122.0	2.88e-32	N/A	N/A
eggNOG-mapper	UHGV-1441622_11	1232449.BAHV02000008_gene619	108.0	3.69e-28	N/A	N/A
KOfam	UHGV-1441622_12	K17677	344.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1441622_12	phrog_16	286.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441622_12	UniRef90_A0A1Y4LTU1	1033.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1441622_12	1232449.BAHV02000008_gene620	832.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1441622_12	mREase_IV_00005	140.2	1.70006e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1441622_12	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1441622_12	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1441622_12	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1441622_12	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1441622_13	K07505	406.3	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1441622_13	phrog_2597	1173.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441622_13	UniRef90_A0A1Y4LY87	1382.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1441622_13	999413.HMPREF1094_00232	965.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1441622_13	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1441622_13	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1441622_13	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1441622_13	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1441622_15	K01160	48.4	0.00000000000022	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1441622_15	phrog_140	103.1	2.3e-30	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441622_15	UniRef90_A0A3D4L3X9	148.0	1.66755e-43	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1441622_15	394503.Ccel_3302	142.0	4.5304e-42	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1441622_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1441622_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1441622_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_17	phrog_15198	65.5	8.3e-19	N/A	unknown function
UniRef90	UHGV-1441622_17	UniRef90_A0A1Y4LYN3	76.6	0.00000000000000127	N/A	N/A
eggNOG-mapper	UHGV-1441622_17	658655.HMPREF0988_00863	50.8	0.00000631	N/A	N/A
structural_annotation	UHGV-1441622_22	PF01920,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_23	phrog_509	264.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-1441622_23	UniRef90_UPI001F0D9F9C	241.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1441622_23	1232449.BAHV02000008_gene626	227.0	0	DNA packaging	N/A
Pfam	UHGV-1441622_23	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
NCBIFam	UHGV-1441622_23	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-1441622_23	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441622_23	NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-1441622_24	K06909	69.0	6.2e-20	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1441622_24	phrog_2	75.1	1.2e-21	terminase large subunit	head and packaging
UniRef90	UHGV-1441622_24	UniRef90_A0A8E3MVD8	769.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1441622_24	411902.CLOBOL_00139	738.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1441622_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1441622_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1441622_24	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_25	phrog_533	362.6	0	portal protein	head and packaging
UniRef90	UHGV-1441622_25	UniRef90_A0A8E3MVT4	606.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1441622_25	999413.HMPREF1094_00220	511.0	0	phage minor capsid protein	N/A
Pfam	UHGV-1441622_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1441622_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_26	phrog_581	244.1	0	minor head protein	head and packaging
UniRef90	UHGV-1441622_26	UniRef90_UPI001C3BD1F2	408.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1441622_26	411461.DORFOR_01164	314.0	0	N/A	N/A
Pfam	UHGV-1441622_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1441622_26	COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1441622_28	1232449.BAHV02000010_gene2712	70.1	0.0000000000000025	N/A	N/A
PHROG	UHGV-1441622_29	phrog_194	52.5	0.0000000000000082	head scaffolding protein	head and packaging
UniRef90	UHGV-1441622_29	UniRef90_UPI001EEEEE4A	58.2	0.000000287	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1441622_29	1140001.I571_01833	56.6	0.000000185	Phage minor structural protein GP20	N/A
PHROG	UHGV-1441622_30	phrog_10	187.6	0	major head protein	head and packaging
UniRef90	UHGV-1441622_30	UniRef90_UPI001C3B6033	621.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1441622_30	1449050.JNLE01000003_gene3889	554.0	0	Phage capsid family	N/A
Pfam	UHGV-1441622_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1441622_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1441622_30	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1441622_30	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_32	phrog_541	82.0	5.6e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-1441622_32	1304866.K413DRAFT_3039	58.2	0.00000000507	N/A	N/A
PHROG	UHGV-1441622_33	phrog_3366	46.6	0.000000000000074	N/A	unknown function
Pfam	UHGV-1441622_33	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1441622_33	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_34	phrog_556	58.2	1.1e-16	minor head protein	head and packaging
UniRef90	UHGV-1441622_34	UniRef90_UPI000930E2B9	144.0	1.05994e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-1441622_34	411461.DORFOR_01170	117.0	1.29e-31	Minor capsid protein	N/A
Pfam	UHGV-1441622_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1441622_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_35	phrog_3266	92.4	3.5e-27	tail completion	connector
eggNOG-mapper	UHGV-1441622_35	428127.EUBDOL_01219	64.3	0.000000000042	N/A	N/A
structural_annotation	UHGV-1441622_35	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_36	phrog_820	85.1	6.4e-25	major tail protein	tail
UniRef90	UHGV-1441622_36	UniRef90_A0A174M1L1	238.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1441622_36	411461.DORFOR_01172	223.0	0	N/A	N/A
structural_annotation	UHGV-1441622_36	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
Pfam	UHGV-1441622_37	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-1441622_37	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_38	phrog_706	126.7	1.3e-37	N/A	unknown function
UniRef90	UHGV-1441622_38	UniRef90_A0A1M6B1I0	174.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1441622_38	411490.ANACAC_00711	119.0	7.37e-31	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1441622_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1441622_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_40	phrog_9959	163.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1441622_40	UniRef90_UPI001BC868E1	365.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1441622_40	411470.RUMGNA_02228	363.0	0	tape measure	N/A
Pfam	UHGV-1441622_40	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1441622_40	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1441622_40	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1441622_41	phrog_33	61.7	1.6e-17	distal tail protein Dit	tail
UniRef90	UHGV-1441622_41	UniRef90_A0A414S2W8	160.0	1.4013e-45	Phage tail protein	N/A
eggNOG-mapper	UHGV-1441622_41	1232446.BAIE02000002_gene835	112.0	1.5e-27	phage tail	N/A
COG	UHGV-1441622_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1441622_41	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_42	phrog_13289	337.3	0	tail protein	tail
UniRef90	UHGV-1441622_42	UniRef90_A0A1Q6KA70	480.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1441622_42	1232446.BAIE02000002_gene836	476.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1441622_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1441622_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1441622_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1441622_42	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_43	phrog_8781	50.3	0.000000000000041	endolysin	lysis
UniRef90	UHGV-1441622_43	UniRef90_A0A4V0ET45	105.0	6.86e-25	Phage lysin, N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1441622_43	552396.HMPREF0863_01651	96.7	1.94e-22	lysozyme activity	N/A
COG	UHGV-1441622_43	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1441622_43	PF05382,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1441622_45	phrog_19695	55.4	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1441622_45	411462.DORLON_00772	79.3	6.67e-18	N/A	N/A
structural_annotation	UHGV-1441622_45	PF19714	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441622_46	UniRef90_UPI00156D7781	151.0	1.87003e-41	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-1441622_46	1232452.BAIB02000007_gene1610	163.0	0	N/A	N/A
structural_annotation	UHGV-1441622_46	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-1441622_47	K16628	62.9	1.2e-18	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1441622_47	phrog_819	94.7	5.7e-28	tail protein	tail
UniRef90	UHGV-1441622_47	UniRef90_A0A3E3E4F9	154.0	4.76441e-44	Collagen-like protein	N/A
Pfam	UHGV-1441622_47	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-1441622_48	K16628	74.4	4.4e-22	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1441622_48	phrog_5073	68.3	2.4e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-1441622_48	1151292.QEW_0668	61.6	0.0000000343	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-1441622_48	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1441622_48	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-1441622_49	phrog_24267	60.1	4.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1441622_49	1141137.K4F7V9_9CAUD	72.0	0.0000000000000496	N-acetylmuramoyl-L-alanine amidase activity	N/A