UHGV-1441853 (vOTU-136713)

Viral Genome: UHGV-1441853

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1441853
vOTU ID	vOTU-136713
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0147746
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.41 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.99
Jumbo phage	No

Genome content
Genome length (bp)	20,200
GC content	40.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	27
CDS density	93%
Average CDS length (bps)	697.11
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1441853_2	phrog_3584	146.9	1.20512e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1441853_2	1235800.C819_00515	72.4	0.00000000000271	N/A	N/A
structural_annotation	UHGV-1441853_2	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1441853_3	431943.CKL_4074	52.0	0.00000166	N/A	N/A
structural_annotation	UHGV-1441853_3	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_4	phrog_119	69.5	4.4e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441853_4	UniRef90_A0A412ULY9	219.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1441853_4	1158607.UAU_01026	102.0	5.07e-27	HNH endonuclease	N/A
Pfam	UHGV-1441853_4	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1441853_4	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1441853_5	phrog_5110	83.0	2.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1441853_5	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1441853_5	1211817.CCAT010000053_gene2128	100.0	3.14e-26	N/A	N/A
Pfam	UHGV-1441853_5	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1441853_5	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_6	phrog_9	289.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1441853_6	UniRef90_A0A412UM03	1038.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1441853_6	86416.Clopa_0337	607.0	0	Phage Terminase	N/A
Pfam	UHGV-1441853_6	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1441853_6	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1441853_6	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1441853_6	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_7	phrog_12	100.3	1.3e-29	portal protein	head and packaging
UniRef90	UHGV-1441853_7	UniRef90_A0A412ULV9	721.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1441853_7	1415774.U728_1254	263.0	0	Phage portal protein	N/A
Pfam	UHGV-1441853_7	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1441853_7	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1441853_7	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1441853_7	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1441853_8	K01358	142.6	3.30006e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1441853_8	phrog_94	213.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1441853_8	UniRef90_A0A412ULU1	410.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1441853_8	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1441853_8	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1441853_8	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1441853_8	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_9	phrog_10	123.8	1.4e-36	major head protein	head and packaging
UniRef90	UHGV-1441853_9	UniRef90_A0A412ULW9	724.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1441853_9	1211817.CCAT010000053_gene2132	324.0	0	Phage capsid family	N/A
Pfam	UHGV-1441853_9	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1441853_9	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1441853_9	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1441853_9	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_10	phrog_749	55.7	7e-16	N/A	unknown function
UniRef90	UHGV-1441853_10	UniRef90_A0A1G5CMX8	104.0	4.99e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1441853_10	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-1441853_11	phrog_19734	74.3	1.3e-21	N/A	unknown function
UniRef90	UHGV-1441853_11	UniRef90_UPI00057FE645	57.8	0.0000000175	phage head closure protein	N/A
eggNOG-mapper	UHGV-1441853_11	86416.Clopa_0343	60.5	0.000000000316	N/A	N/A
NCBIFam	UHGV-1441853_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1441853_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441853_12	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441853_13	UniRef90_UPI000E5564A4	273.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1441853_13	1235792.C808_00089	50.1	0.00000847	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1441853_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1441853_13	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_14	phrog_88	73.3	3e-21	major tail protein	tail
eggNOG-mapper	UHGV-1441853_14	1321782.HMPREF1986_01362	65.1	0.000000000263	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1441853_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1441853_14	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441853_15	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_16	phrog_5218	271.6	0	N/A	unknown function
UniRef90	UHGV-1441853_16	UniRef90_UPI000E474EFE	1525.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1441853_16	908340.HMPREF9406_2570	276.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-1441853_16	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1441853_16	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1441853_16	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_17	phrog_33	84.6	1.7e-24	distal tail protein Dit	tail
UniRef90	UHGV-1441853_17	UniRef90_A0A1G5CPA2	142.0	6.5e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-1441853_17	1160721.RBI_I01575	90.9	4.94e-19	Phage tail protein	N/A
COG	UHGV-1441853_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1441853_17	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_18	phrog_1067	98.8	1.2e-29	minor head protein	head and packaging
UniRef90	UHGV-1441853_18	UniRef90_A0A348ZBV6	150.0	5e-38	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1441853_18	1462527.CCDM010000003_gene3730	63.5	0.0000000651	gp58-like protein	N/A
Pfam	UHGV-1441853_18	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1441853_18	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1441853_18	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441853_18	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441853_19	UniRef90_A0A374N9Y2	209.0	0	N/A	N/A
structural_annotation	UHGV-1441853_19	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1441853_21	phrog_1863	71.8	6.6e-22	N/A	unknown function
UniRef90	UHGV-1441853_21	UniRef90_UPI001F223E8B	90.9	2.7e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1441853_21	1203606.HMPREF1526_02027	81.3	2.82e-19	N/A	N/A
PHROG	UHGV-1441853_22	phrog_443	63.1	6.8e-18	holin	lysis
UniRef90	UHGV-1441853_22	UniRef90_R6R2Q3	89.7	3.16e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1441853_22	1235797.C816_04172	81.6	8.66e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1441853_22	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1441853_22	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1441853_23	K01447	57.8	2.1e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1441853_23	phrog_20388	306.2	0	endolysin	lysis
UniRef90	UHGV-1441853_23	UniRef90_A0A374N1L8	540.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1441853_23	1203606.HMPREF1526_00253	317.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1441853_23	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1441853_23	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1441853_23	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1441853_23	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441853_24	UniRef90_A0A412ULX9	108.0	6.42e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1441853_24	679200.HMPREF9333_02253	57.4	0.000000000195	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1441853_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1441853_24	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1441853_24	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A