UHGV-1442690 (vOTU-159994)

Viral Genome: UHGV-1442690

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1442690
vOTU ID	vOTU-159994
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0136696
Associated BioSample	SAMEA1906455
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.45 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9834
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.06
Jumbo phage	No

Genome content
Genome length (bp)	18,913
GC content	40.67%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	22
CDS density	95%
Average CDS length (bps)	817.77
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1442690_2	phrog_2189	486.7	0	tail protein	tail
UniRef90	UHGV-1442690_2	UniRef90_A0A1F0KA01	1922.0	0	Gp58 domain-containing protein	N/A
eggNOG-mapper	UHGV-1442690_2	1316408.HSISM1_1246	1078.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1442690_2	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
NCBIFam	UHGV-1442690_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1442690_2	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1442690_2	PF14594,PF00629,TIGR01665,TIGR04362,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_3	phrog_33	41.9	0.000000000023	distal tail protein Dit	tail
UniRef90	UHGV-1442690_3	UniRef90_UPI001CC00BD7	382.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1442690_3	1316408.HSISM1_1245	471.0	0	N/A	N/A
structural_annotation	UHGV-1442690_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1442690_4	K10421	45.8	0.00000000000038	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1442690_4	phrog_5755	416.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1442690_4	UniRef90_A0A1F0KCN3	1385.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1442690_4	1316408.HSISM1_1244	1245.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-1442690_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1442690_4	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1442690_4	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_5	phrog_709	135.6	1.8e-40	N/A	unknown function
UniRef90	UHGV-1442690_5	UniRef90_A0A0E4CSV4	165.0	0	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-1442690_5	1316408.HSISM1_1243	235.0	0	N/A	N/A
structural_annotation	UHGV-1442690_5	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_6	phrog_88	152.7	1.4013e-45	major tail protein	tail
UniRef90	UHGV-1442690_6	UniRef90_T0U4F0	378.0	0	Phage major tail protein	N/A
eggNOG-mapper	UHGV-1442690_6	1316408.HSISM1_1242	378.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1442690_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1442690_6	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_7	phrog_78	42.8	0.000000000011	tail terminator	connector
UniRef90	UHGV-1442690_7	UniRef90_T0U477	205.0	0	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-1442690_7	1316408.HSISM1_1241	205.0	0	N/A	N/A
structural_annotation	UHGV-1442690_7	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_8	phrog_5	49.7	0.0000000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-1442690_8	UniRef90_A0A414CIF4	161.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1442690_8	1316408.HSISM1_1058	171.0	0	N/A	N/A
Pfam	UHGV-1442690_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1442690_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_9	phrog_1951	120.1	7.5e-36	head-tail adaptor	connector
UniRef90	UHGV-1442690_9	UniRef90_A0A414CIH3	202.0	0	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1442690_9	1316408.HSISM1_1057	202.0	0	Phage head-tail joining protein	N/A
NCBIFam	UHGV-1442690_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1442690_9	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1442690_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_10	phrog_2550	126.9	3.7e-38	N/A	unknown function
UniRef90	UHGV-1442690_10	UniRef90_T0U4H0	171.0	0	Orf46	N/A
eggNOG-mapper	UHGV-1442690_10	644007.C5J965_9CAUD	152.0	0	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-1442690_10	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_11	phrog_3673	60.3	2e-17	Arc-like repressor	transcription regulation
UniRef90	UHGV-1442690_11	UniRef90_A0A4D6A7J7	74.7	0.00000000000000304	Transcriptional terminator	N/A
PHROG	UHGV-1442690_12	phrog_10	118.9	5.3e-35	major head protein	head and packaging
UniRef90	UHGV-1442690_12	UniRef90_A0A4D6B1V9	390.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1442690_12	1316408.HSISM1_1054	403.0	0	capsid protein	N/A
Pfam	UHGV-1442690_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1442690_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1442690_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1442690_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_13	phrog_10	45.5	0.0000000000008	major head protein	head and packaging
UniRef90	UHGV-1442690_13	UniRef90_UPI00148F1DA5	153.0	7.00649e-45	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1442690_13	1316408.HSISM1_1054	223.0	0	capsid protein	N/A
NCBIFam	UHGV-1442690_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1442690_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
KOfam	UHGV-1442690_14	K06904	128.9	5.4e-38	N/A	N/A
PHROG	UHGV-1442690_14	phrog_80	157.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1442690_14	UniRef90_A0A414CJ71	372.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1442690_14	1316408.HSISM1_1053	369.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1442690_14	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1442690_14	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1442690_14	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1442690_14	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_15	phrog_12	188.7	0	portal protein	head and packaging
UniRef90	UHGV-1442690_15	UniRef90_A0A4D6B580	785.0	0	Portal (Connector) protein	N/A
eggNOG-mapper	UHGV-1442690_15	1316408.HSISM1_1052	786.0	0	Phage portal protein	N/A
Pfam	UHGV-1442690_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1442690_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1442690_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1442690_15	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_16	phrog_9	338.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1442690_16	UniRef90_A0A7G1IQ86	1088.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1442690_16	888049.HMPREF8578_0694	1095.0	0	Terminase	N/A
Pfam	UHGV-1442690_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1442690_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1442690_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1442690_16	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_17	phrog_361	145.0	2.49431e-43	terminase small subunit	head and packaging
UniRef90	UHGV-1442690_17	UniRef90_A0A414CIM9	237.0	0	POU-specific domain-containing protein	N/A
eggNOG-mapper	UHGV-1442690_17	1316408.HSISM1_1050	237.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1442690_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1442690_17	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1442690_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1442690_18	phrog_119	73.2	3.9e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1442690_18	UniRef90_A0A062WSH4	194.0	0	Bacteriophage nuclease	N/A
eggNOG-mapper	UHGV-1442690_18	888049.HMPREF8578_0692	194.0	0	endonuclease activity	N/A
COG	UHGV-1442690_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1442690_19	phrog_2275	108.8	2.7e-32	N/A	unknown function
UniRef90	UHGV-1442690_19	UniRef90_A0A060QNB6	97.8	2.08e-24	N/A	N/A
eggNOG-mapper	UHGV-1442690_19	1225805.J7KIX3_9CAUD	89.0	1.11e-21	N/A	N/A
PHROG	UHGV-1442690_20	phrog_98	55.4	2.1e-16	N/A	unknown function
UniRef90	UHGV-1442690_20	UniRef90_A0A1F0KB46	309.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1442690_20	585203.SMSK564_1299	69.7	0.00000000000353	N/A	N/A
Pfam	UHGV-1442690_20	PF09643	N/A	N/A	YopX protein	YopX
UniRef90	UHGV-1442690_21	UniRef90_UPI0003FBCA67	81.3	3.04e-18	N/A	N/A
KOfam	UHGV-1442690_22	K04763	102.0	8.4e-30	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1442690_22	phrog_216	185.2	0	integrase	integration and excision
UniRef90	UHGV-1442690_22	UniRef90_A0A4D6B299	350.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-1442690_22	644007.C5J955_9CAUD	352.0	0	Phage integrase family	N/A
Pfam	UHGV-1442690_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
structural_annotation	UHGV-1442690_22	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A