UHGV-1445596 (vOTU-074103)

Viral Genome: UHGV-1445596

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1445596
vOTU ID	vOTU-074103
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0261014
Associated BioSample	SAMN02333965
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.58 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9716
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.38
Jumbo phage	No

Genome content
Genome length (bp)	38,631
GC content	28.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	93%
Average CDS length (bps)	551.72
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1445596_1	K14059	105.0	1.1e-30	int; integrase	N/A
PHROG	UHGV-1445596_1	phrog_1	87.5	1.3e-25	integrase	integration and excision
UniRef90	UHGV-1445596_1	UniRef90_UPI0009BB5D80	87.8	3.93e-16	site-specific integrase	N/A
Pfam	UHGV-1445596_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-1445596_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1445596_1	PF00589,PF14659,PF12167,MF_01807,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1445596_2	K01356	127.7	1.2e-37	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1445596_2	phrog_4	76.1	1.3e-23	transcriptional repressor	transcription regulation
UniRef90	UHGV-1445596_2	UniRef90_R5YSE6	331.0	0	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-1445596_2	1194526.A284_08095	103.0	1.64e-23	Peptidase S24-like	N/A
Pfam	UHGV-1445596_2	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1445596_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1445596_2	PF00717,PF01381,MF_00015,TIGR00498,NF010465,COG1974,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1445596_3	1131462.DCF50_p1827	55.8	0.0000000022	N/A	N/A
structural_annotation	UHGV-1445596_3	PF05339,NF007271,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1445596_4	K07741	83.1	7.5e-24	antB; anti-repressor protein	N/A
PHROG	UHGV-1445596_4	phrog_130	240.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1445596_4	UniRef90_A0A285G6M2	297.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-1445596_4	1443125.Z962_05790	285.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1445596_4	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1445596_4	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1445596_4	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1445596_4	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_8	phrog_253	113.6	1.5e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1445596_8	UniRef90_A0A4V1QXJ0	110.0	1.29e-27	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1445596_8	546275.FUSPEROL_02051	94.0	6.46e-22	Siphovirus Gp157	N/A
Pfam	UHGV-1445596_8	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1445596_8	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_9	phrog_14970	262.4	0	N/A	unknown function
UniRef90	UHGV-1445596_9	UniRef90_A0A3P6JH63	218.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1445596_9	411470.RUMGNA_02193	211.0	0	double-strand break repair protein	N/A
COG	UHGV-1445596_9	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1445596_9	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1445596_10	K03111	134.4	1.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1445596_10	phrog_44	137.5	8.00001e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1445596_10	UniRef90_R5Z2P9	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1445596_10	1291050.JAGE01000001_gene1719	163.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1445596_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1445596_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1445596_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1445596_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1445596_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_11	phrog_72	62.0	3.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1445596_11	UniRef90_A0A8D9PDS2	100.0	1.38e-23	NinB protein	N/A
eggNOG-mapper	UHGV-1445596_11	445972.ANACOL_01825	91.3	1.13e-20	N/A	N/A
structural_annotation	UHGV-1445596_11	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_13	phrog_7566	46.5	0.00000000000053	N/A	unknown function
eggNOG-mapper	UHGV-1445596_13	1118057.CAGX01000020_gene1648	49.7	0.00000032	N/A	N/A
PHROG	UHGV-1445596_14	phrog_8489	273.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1445596_14	UniRef90_A0A8F5FXS4	238.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-1445596_14	1139219.I569_00860	213.0	0	DnaD domain protein	N/A
COG	UHGV-1445596_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1445596_14	PF09681,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1445596_15	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_16	phrog_4973	50.4	0.000000000000034	N/A	unknown function
UniRef90	UHGV-1445596_16	UniRef90_A0A843HM15	68.9	0.0000000000000932	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1445596_16	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1445596_16	PF14090,NF008549,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_18	phrog_34	45.0	0.0000000000022	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1445596_18	UniRef90_A0A6B9SRR2	119.0	2.84e-32	Endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1445596_18	525919.Apre_0813	103.0	6.79e-27	Endodeoxyribonuclease RusA	N/A
COG	UHGV-1445596_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1445596_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-1445596_23	PF07412	N/A	N/A	Geminin	Geminin
structural_annotation	UHGV-1445596_24	PF14001,MF_01194,TIGR03318,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_26	phrog_36	59.7	5.6e-17	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1445596_26	PF07374,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_29	phrog_2412	78.2	9.6e-23	N/A	unknown function
UniRef90	UHGV-1445596_29	UniRef90_UPI000427CABE	70.5	0.000000000000653	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-1445596_29	563192.HMPREF0179_00168	75.9	6.14e-16	N/A	N/A
PHROG	UHGV-1445596_30	phrog_30251	596.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1445596_30	UniRef90_R7ITA5	688.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-1445596_30	469618.FVAG_00794	536.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1445596_30	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1445596_30	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1445596_30	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_31	phrog_64	226.9	0	portal protein	head and packaging
UniRef90	UHGV-1445596_31	UniRef90_R7IUE9	897.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1445596_31	665956.HMPREF1032_03614	249.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1445596_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1445596_31	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_32	phrog_4502	99.9	3.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-1445596_32	268407.PWYN_12400	110.0	2.79e-30	N/A	N/A
structural_annotation	UHGV-1445596_32	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_33	phrog_28652	139.2	3.39997e-41	N/A	unknown function
UniRef90	UHGV-1445596_33	UniRef90_R7IWF4	362.0	0	SPP1 gp7 family phage putative head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1445596_33	1232449.BAHV02000010_gene2710	90.9	1.76e-16	N/A	N/A
COG	UHGV-1445596_33	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1445596_33	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_35	phrog_3896	57.9	1.4e-16	N/A	unknown function
UniRef90	UHGV-1445596_35	UniRef90_A0A069AU92	52.8	0.0000000382	Actin aggregate factor	N/A
PHROG	UHGV-1445596_37	phrog_59	159.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1445596_37	UniRef90_L0P6F5	172.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1445596_37	1206110.L0P6F5_9CAUD	172.0	0	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-1445596_37	HEase_00016	97.1	4.8e-31	homing endonuclease	RM
Pfam	UHGV-1445596_37	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1445596_37	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1445596_37	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_38	phrog_172	79.2	7.2e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-1445596_38	UniRef90_A0A3D1PKZ2	65.1	0.000000000883	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1445596_38	1423724.BAMM01000012_gene1365	55.5	0.000000614	N/A	N/A
Pfam	UHGV-1445596_38	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1445596_38	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_39	phrog_247	283.6	0	major head protein	head and packaging
UniRef90	UHGV-1445596_39	UniRef90_R7ITV5	728.0	0	Putative prophage Lp2 protein 40	N/A
eggNOG-mapper	UHGV-1445596_39	445335.CBN_1379	307.0	0	N/A	N/A
COG	UHGV-1445596_39	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-1445596_39	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1445596_40	445972.ANACOL_01847	48.9	0.00000515	N/A	N/A
structural_annotation	UHGV-1445596_40	PF05135,TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1445596_41	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1445596_42	665956.HMPREF1032_03623	52.8	0.00000394	N/A	N/A
structural_annotation	UHGV-1445596_42	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1445596_43	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1445596_44	445972.ANACOL_01851	85.9	3.13e-19	N/A	N/A
structural_annotation	UHGV-1445596_44	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1445596_45	PF12363	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1445596_47	1400520.LFAB_08840	48.1	0.00000558	N/A	N/A
AcrCatalog	UHGV-1445596_47	cluster_25152	40.0	0.000000233	NA	N/A
structural_annotation	UHGV-1445596_47	PF13783,MF_01122	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_48	phrog_5319	60.6	2.3e-17	outer membrane protein	other
UniRef90	UHGV-1445596_48	UniRef90_A0A1Q6JN93	120.0	4.07e-30	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1445596_48	1042156.CXIVA_15870	101.0	7.3e-23	sh3 domain protein	N/A
COG	UHGV-1445596_48	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1445596_48	PF11355,PF13828,MF_00791,TIGR02588,COG5633	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_52	phrog_463	160.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-1445596_52	UniRef90_UPI0004A7F94E	172.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-1445596_52	632518.Calow_0811	172.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1445596_52	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1445596_52	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1445596_52	COG3617	N/A	N/A	Prophage antirepressor	N/A
KOfam	UHGV-1445596_55	K06240	49.6	3.9e-17	LAMA3_5; laminin, alpha 3/5	N/A
PHROG	UHGV-1445596_55	phrog_1535	151.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1445596_55	1235800.C819_04025	90.1	0.00000000000000279	Phage-related minor tail protein	N/A
COG	UHGV-1445596_55	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1445596_55	PF09486,NF038178,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_56	phrog_1194	65.9	5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1445596_56	1000588.HMPREF9965_1690	50.4	0.0000037	N/A	N/A
structural_annotation	UHGV-1445596_56	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_57	phrog_13879	78.5	3.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1445596_57	1122919.KB905559_gene1344	81.6	0.000000000000202	N/A	N/A
structural_annotation	UHGV-1445596_57	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1445596_59	phrog_9116	154.8	0	tail protein	tail
UniRef90	UHGV-1445596_59	UniRef90_A0A3D1PJI0	225.0	0	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-1445596_59	694427.Palpr_1970	140.0	3.88e-33	tail collar domain protein	N/A
Pfam	UHGV-1445596_59	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-1445596_59	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1445596_62	phrog_5073	50.2	0.000000000000035	tail fiber protein	tail
eggNOG-mapper	UHGV-1445596_62	742733.HMPREF9469_00973	66.2	0.0000000378	N/A	N/A
PHROG	UHGV-1445596_63	phrog_2310	53.8	0.0000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-1445596_63	1415774.U728_3409	49.3	0.000000413	N/A	N/A