UHGV-1446851 (vOTU-082787)

Viral Genome: UHGV-1446851

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1446851
vOTU ID	vOTU-082787
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0200170
Associated BioSample	SAMEA2738166
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.58 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.84
Jumbo phage	No

Genome content
Genome length (bp)	28,003
GC content	38.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	92%
Average CDS length (bps)	582.34
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1446851_1	K14059	236.8	0	int; integrase	N/A
PHROG	UHGV-1446851_1	phrog_1	206.4	0	integrase	integration and excision
UniRef90	UHGV-1446851_1	UniRef90_A0A847CB94	397.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1446851_1	908340.HMPREF9406_3938	172.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1446851_1	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1446851_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1446851_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1446851_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_2	phrog_9418	131.8	2.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-1446851_2	471855.Shel_21720	147.0	1.96182e-44	N/A	N/A
structural_annotation	UHGV-1446851_2	PF10233	N/A	N/A	N/A	N/A
KOfam	UHGV-1446851_3	K01356	113.3	3.5e-33	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1446851_3	phrog_4	85.1	1.2e-24	transcriptional repressor	transcription regulation
UniRef90	UHGV-1446851_3	UniRef90_J5UD71	282.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-1446851_3	936375.HMPREF1152_0654	282.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1446851_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1446851_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1446851_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1446851_3	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-1446851_4	K07729	55.4	0.0000000000000014	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1446851_4	phrog_8	54.3	0.0000000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-1446851_4	UniRef90_A0A0K9N6Z7	67.8	0.000000000000126	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-1446851_4	888060.HMPREF9081_1958	57.4	0.000000000308	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-1446851_4	retron_type_VI_hth_cluster2_1	44.8	0.0000000000035	N/A	Retron
Pfam	UHGV-1446851_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1446851_4	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_6	phrog_9188	50.5	0.000000000000034	N/A	unknown function
structural_annotation	UHGV-1446851_6	PF11023	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1446851_7	PF11372	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_12	phrog_7566	74.9	5.8e-22	N/A	unknown function
PHROG	UHGV-1446851_14	phrog_7445	43.5	0.0000000000052	N/A	unknown function
Pfam	UHGV-1446851_14	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-1446851_14	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_15	phrog_8470	222.8	0	N/A	unknown function
UniRef90	UHGV-1446851_15	UniRef90_J6H8Z2	508.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1446851_15	936375.HMPREF1152_0668	508.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1446851_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1446851_15	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_16	phrog_15609	160.3	0	N/A	unknown function
UniRef90	UHGV-1446851_16	UniRef90_J4W6X5	326.0	0	PF11300 family protein	N/A
eggNOG-mapper	UHGV-1446851_16	936375.HMPREF1152_0669	326.0	0	N/A	N/A
Pfam	UHGV-1446851_16	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1446851_16	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-1446851_16	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
UniRef90	UHGV-1446851_19	UniRef90_A0A2S0L5I7	108.0	1e-29	MazG domain-containing protein	N/A
KOfam	UHGV-1446851_20	K03111	145.4	5.70328e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1446851_20	phrog_44	144.3	7.00649e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1446851_20	UniRef90_A0A2S0L5J3	275.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1446851_20	936375.HMPREF1152_1764	211.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1446851_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1446851_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1446851_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1446851_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1446851_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_22	phrog_3584	169.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1446851_22	UniRef90_A0A1I5LZL1	137.0	1.17e-35	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1446851_22	936375.HMPREF1152_0670	323.0	0	N/A	N/A
structural_annotation	UHGV-1446851_22	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_23	phrog_36	64.6	1.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1446851_23	UniRef90_J5WFY5	137.0	4.04e-39	PF07374 family protein	N/A
eggNOG-mapper	UHGV-1446851_23	1120978.KB894081_gene99	62.4	0.000000000228	N/A	N/A
COG	UHGV-1446851_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1446851_23	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_24	phrog_119	67.8	1.5e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1446851_24	UniRef90_UPI000B454B78	91.3	1.49e-21	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1446851_24	290402.Cbei_0903	87.0	9.83e-21	HNH nucleases	N/A
COG	UHGV-1446851_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1446851_25	phrog_13845	120.5	4.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-1446851_25	1399942.U3PDR2_9CAUD	112.0	3.89e-30	N/A	N/A
Pfam	UHGV-1446851_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-1446851_26	phrog_9	358.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1446851_26	UniRef90_A0A3D1WME8	743.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1446851_26	1160721.RBI_I01585	503.0	0	large subunit	N/A
Pfam	UHGV-1446851_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1446851_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1446851_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1446851_26	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_27	phrog_12	168.9	0	portal protein	head and packaging
UniRef90	UHGV-1446851_27	UniRef90_A0A1V5INC9	350.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1446851_27	324057.Pjdr2_1541	255.0	0	Phage portal protein	N/A
Pfam	UHGV-1446851_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1446851_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1446851_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1446851_28	K06904	109.7	3.7e-32	N/A	N/A
PHROG	UHGV-1446851_28	phrog_80	132.6	4.2e-39	head maturation protease	head and packaging
UniRef90	UHGV-1446851_28	UniRef90_A0A3B9G0S9	184.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1446851_28	1519439.JPJG01000037_gene953	153.0	2.24208e-44	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1446851_28	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1446851_28	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1446851_28	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1446851_28	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_29	phrog_10	181.2	0	major head protein	head and packaging
UniRef90	UHGV-1446851_29	UniRef90_UPI001958A6F5	323.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1446851_29	1297617.JPJD01000009_gene2879	160.0	3.09967e-42	Phage capsid family	N/A
Pfam	UHGV-1446851_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1446851_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1446851_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1446851_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1446851_30	1033738.CAEP01000018_gene3674	52.0	0.000000213	N/A	N/A
structural_annotation	UHGV-1446851_30	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_31	phrog_1951	81.8	5.9e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-1446851_31	396034.A6XMK0_9CAUD	62.4	0.0000000000273	N/A	N/A
structural_annotation	UHGV-1446851_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1446851_32	UniRef90_UPI00053BF247	85.1	6.08e-19	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1446851_32	202752.JL53_03770	85.9	4.95e-20	N/A	N/A
structural_annotation	UHGV-1446851_32	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1446851_33	644007.C5J968_9CAUD	52.0	0.000000383	aminopeptidase activity	N/A
structural_annotation	UHGV-1446851_33	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_34	phrog_88	109.6	2.5e-32	major tail protein	tail
UniRef90	UHGV-1446851_34	UniRef90_U7UEE8	135.0	7.16e-37	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1446851_34	1111134.HMPREF1253_0377	135.0	1.2e-37	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-1446851_34	PF06488	N/A	N/A	Phage tail tube protein	L_lac_phage_MSP
NCBIFam	UHGV-1446851_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1446851_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_35	phrog_709	74.1	1.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1446851_35	1111134.HMPREF1253_0376	72.0	0.0000000000000966	N/A	N/A
structural_annotation	UHGV-1446851_35	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_36	phrog_5755	120.8	1.4e-35	tail length tape measure protein	tail
UniRef90	UHGV-1446851_36	UniRef90_A0A496UQP9	135.0	1.84e-30	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1446851_36	1042156.CXIVA_01700	212.0	0	tape measure	N/A
COG	UHGV-1446851_36	COG5281	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-1446851_37	phrog_202	221.2	0	distal tail protein Dit	tail
UniRef90	UHGV-1446851_37	UniRef90_A0A7Y9B0J5	273.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-1446851_37	556261.HMPREF0240_01280	172.0	4.2039e-45	Phage tail protein	N/A
Pfam	UHGV-1446851_37	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1446851_37	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1446851_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1446851_37	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_38	phrog_9478	277.9	0	minor tail protein	tail
UniRef90	UHGV-1446851_38	UniRef90_A0A7Y9B0I6	446.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1446851_38	476272.RUMHYD_02865	307.0	0	N/A	N/A
Pfam	UHGV-1446851_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1446851_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1446851_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1446851_40	phrog_1863	53.3	0.000000000000003	N/A	unknown function
eggNOG-mapper	UHGV-1446851_40	748224.HMPREF9436_01412	65.1	0.000000000000498	N/A	N/A
PHROG	UHGV-1446851_41	phrog_962	86.2	3.9e-25	holin	lysis
UniRef90	UHGV-1446851_41	UniRef90_A0A2S0L6A5	147.0	8.12753e-44	Phage holin	N/A
eggNOG-mapper	UHGV-1446851_41	936375.HMPREF1152_0014	89.0	1.73e-21	Bacteriophage holin	N/A
Pfam	UHGV-1446851_41	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1446851_41	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1446851_41	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1446851_41	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1446851_42	K00689	73.8	8.5e-22	E2.4.1.5; dextransucrase [EC:2.4.1.5]	N/A
PHROG	UHGV-1446851_42	phrog_7854	105.4	3.1e-39	endolysin	lysis
UniRef90	UHGV-1446851_42	UniRef90_UPI0018C3BCA6	65.9	0.0000000149	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1446851_42	1120936.KB907210_gene5864	63.9	0.0000000109	CHAP domain	N/A
Pfam	UHGV-1446851_42	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1446851_42	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
Pfam	UHGV-1446851_42	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1446851_42	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-1446851_42	PF19127,PF05382,TIGR04035,NF008096,COG5263,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-1446851_43	K07726	43.4	0.0000000000057	K07726; putative transcriptional regulator	N/A
UniRef90	UHGV-1446851_43	UniRef90_A0A223ATJ2	96.3	4.48e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1446851_43	888727.HMPREF9092_0491	71.2	6.22e-16	Helix-turn-helix	N/A
Pfam	UHGV-1446851_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1446851_43	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1446851_43	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-1446851_44	UniRef90_J5WU57	154.0	2.19023e-42	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1446851_44	883109.HMPREF0380_00716	223.0	0	N/A	N/A