UHGV-1448046 (vOTU-092473)

Viral Genome: UHGV-1448046

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1448046
vOTU ID	vOTU-092473
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0200899
Associated BioSample	SAMEA3664516
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.46 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.99
Jumbo phage	No

Genome content
Genome length (bp)	28,123
GC content	41.64%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	91%
Average CDS length (bps)	435.51
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1448046_1	phrog_8448	53.3	0.0000000000000051	anti-repressor	transcription regulation
UniRef90	UHGV-1448046_1	UniRef90_UPI0012DFCA1F	76.6	2.98e-16	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1448046_1	476272.RUMHYD_03311	110.0	2.25e-29	ORF6C domain	N/A
Pfam	UHGV-1448046_1	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1448046_1	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
PHROG	UHGV-1448046_2	phrog_6058	56.1	3.8e-16	N/A	unknown function
UniRef90	UHGV-1448046_2	UniRef90_A0A2V1JQ38	64.7	0.0000000000158	Glycogen synthase	N/A
eggNOG-mapper	UHGV-1448046_2	742733.HMPREF9469_05094	62.8	0.0000000000151	N/A	N/A
AcrCatalog	UHGV-1448046_3	cluster_17974	61.2	3.3e-16	NA	N/A
structural_annotation	UHGV-1448046_7	NF001645	N/A	N/A	N/A	N/A
UniRef90	UHGV-1448046_8	UniRef90_R6RDX0	77.0	3.04e-17	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-1448046_9	phrog_2872	164.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1448046_9	UniRef90_A0A8F2J9K2	297.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1448046_9	1304866.K413DRAFT_0827	224.0	0	AAA domain	N/A
Pfam	UHGV-1448046_9	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1448046_9	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_11	phrog_18107	128.5	4.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-1448046_11	476272.RUMHYD_02831	195.0	0	N/A	N/A
structural_annotation	UHGV-1448046_11	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_12	phrog_3490	111.8	5.3e-33	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1448046_12	UniRef90_A0A173R9N6	286.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1448046_12	476272.RUMHYD_02832	286.0	0	ERCC4 domain	N/A
Pfam	UHGV-1448046_12	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-1448046_12	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-1448046_12	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_13	phrog_1313	380.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1448046_13	UniRef90_UPI001655DAE1	703.0	0	bifunctional DNA primase/polymerase	N/A
eggNOG-mapper	UHGV-1448046_13	500632.CLONEX_03568	306.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1448046_13	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
Pfam	UHGV-1448046_13	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
Pfam	UHGV-1448046_13	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1448046_13	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1448046_13	PF05272,PF09250,PF08708,MF_00016,NF011296,COG5545	N/A	N/A	N/A	N/A
UniRef90	UHGV-1448046_15	UniRef90_A0A6L8SWV5	166.0	0	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1448046_15	PF01726,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1448046_16	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_17	phrog_17690	130.2	7.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-1448046_17	476272.RUMHYD_03925	167.0	0	N/A	N/A
structural_annotation	UHGV-1448046_19	NF041070	N/A	N/A	N/A	N/A
KOfam	UHGV-1448046_20	K19779	51.2	0.00000000000002	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-1448046_20	phrog_599	57.0	4.8e-16	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1448046_20	UniRef90_A0A317UED7	114.0	2.47e-32	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1448046_20	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1448046_20	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1448046_20	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1448046_20	PF14354,NF007260	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1448046_21	PF17888	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_22	phrog_924	48.4	0.00000000000019	N/A	unknown function
UniRef90	UHGV-1448046_22	UniRef90_UPI00046759AC	73.2	0.0000000000000145	N/A	N/A
eggNOG-mapper	UHGV-1448046_22	742723.HMPREF9477_00919	51.6	0.00000193	N/A	N/A
Pfam	UHGV-1448046_22	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1448046_26	phrog_20593	51.0	0.00000000000002	N/A	unknown function
PHROG	UHGV-1448046_27	phrog_8684	96.6	9.3e-29	N/A	unknown function
UniRef90	UHGV-1448046_27	UniRef90_A0A3A6GQT2	195.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1448046_27	457412.RSAG_01162	93.6	2.75e-22	YopX protein	N/A
Pfam	UHGV-1448046_27	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1448046_27	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1448046_27	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1448046_28	PF06107,COG4481	N/A	N/A	N/A	N/A
KOfam	UHGV-1448046_34	K06909	380.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1448046_34	phrog_3717	146.1	1.59748e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1448046_34	UniRef90_A0A6L8SYJ6	986.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1448046_34	33035.JPJF01000106_gene3136	530.0	0	Terminase small subunit	N/A
Pfam	UHGV-1448046_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1448046_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1448046_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1448046_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1448046_34	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_35	phrog_533	285.9	0	portal protein	head and packaging
UniRef90	UHGV-1448046_35	UniRef90_A0A1C6CDM8	732.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1448046_35	33035.JPJF01000106_gene3135	553.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1448046_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_36	phrog_581	277.2	0	minor head protein	head and packaging
UniRef90	UHGV-1448046_36	UniRef90_A0A412EKN3	800.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1448046_36	33035.JPJF01000106_gene3134	349.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1448046_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1448046_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1448046_36	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_37	phrog_3754	117.9	5.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-1448046_37	476272.RUMHYD_01764	172.0	0	N/A	N/A
PHROG	UHGV-1448046_38	phrog_59	152.4	1.4013e-45	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1448046_38	UniRef90_UPI0015D4DC00	140.0	3.95e-39	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1448046_38	1229751.R9QM99_9CAUD	125.0	9.08e-34	HNH endonuclease	N/A
PADLOC	UHGV-1448046_38	HEase_00016	119.5	4.4e-35	homing endonuclease	RM
Pfam	UHGV-1448046_38	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1448046_38	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-1448046_38	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-1448046_38	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
UniRef90	UHGV-1448046_39	UniRef90_A0A395X7A4	163.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-1448046_39	476272.RUMHYD_01766	125.0	3.21e-36	N/A	N/A
KOfam	UHGV-1448046_40	K19090	124.9	6.8e-37	cas5t; CRISPR-associated protein Cas5t	N/A
UniRef90	UHGV-1448046_40	UniRef90_UPI0015707911	213.0	0	CRISPR-associated protein Cas5	N/A
eggNOG-mapper	UHGV-1448046_40	1069534.LRC_10220	117.0	3.73e-29	CRISPR-associated protein Cas5	N/A
PADLOC	UHGV-1448046_40	cas_Cas5t	40.2	4.2e-20	CRISPR-associated protein Cas5, subtype I-B/TNEAP	CRISPR-CAS
COG	UHGV-1448046_40	COG1688	N/A	N/A	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	N/A
structural_annotation	UHGV-1448046_40	PF09704,TIGR01895,COG1688	N/A	N/A	N/A	N/A
UniRef90	UHGV-1448046_43	UniRef90_A0A412ELA1	81.3	2.92e-19	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1448046_43	1410625.JHWK01000002_gene45	58.5	0.0000000000671	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1448046_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1448046_43	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1448046_43	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_46	phrog_21718	133.2	1.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-1448046_46	476272.RUMHYD_01768	131.0	5.43e-37	N/A	N/A
PHROG	UHGV-1448046_47	phrog_22984	95.2	3.9e-28	N/A	unknown function
PHROG	UHGV-1448046_48	phrog_16490	194.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1448046_48	397290.C810_01328	177.0	0	N/A	N/A
PHROG	UHGV-1448046_49	phrog_20016	204.4	0	N/A	unknown function
UniRef90	UHGV-1448046_49	UniRef90_A0A285PT46	167.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1448046_49	397290.C810_05214	187.0	0	N/A	N/A
structural_annotation	UHGV-1448046_49	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_50	phrog_28802	222.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1448046_50	476272.RUMHYD_01772	196.0	0	N/A	N/A
PHROG	UHGV-1448046_51	phrog_194	64.2	2.6e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-1448046_51	UniRef90_UPI001D14C9C8	192.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1448046_51	476272.RUMHYD_01775	200.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1448046_51	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1448046_52	phrog_544	168.2	0	major head protein	head and packaging
UniRef90	UHGV-1448046_52	UniRef90_A0A395X7A1	729.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1448046_52	1232453.BAIF02000011_gene3359	390.0	0	N/A	N/A
Pfam	UHGV-1448046_52	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1448046_52	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_53	phrog_541	101.8	2.8e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-1448046_53	476272.RUMHYD_01778	119.0	3.53e-32	N/A	N/A
PHROG	UHGV-1448046_54	phrog_28328	83.7	3.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1448046_54	428125.CLOLEP_01381	55.1	0.00000000838	N/A	N/A
PHROG	UHGV-1448046_55	phrog_355	52.6	0.0000000000000073	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1448046_55	UniRef90_A0A415G5B2	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-1448046_55	397290.C810_05229	178.0	0	N/A	N/A
structural_annotation	UHGV-1448046_55	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_56	phrog_1129	75.5	4.5e-22	holin	lysis
UniRef90	UHGV-1448046_56	UniRef90_A0A395X7B2	170.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1448046_56	411461.DORFOR_00721	113.0	7.19e-32	N/A	N/A
Pfam	UHGV-1448046_56	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1448046_56	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_57	phrog_3366	103.5	1.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-1448046_57	476272.RUMHYD_01779	157.0	0	N/A	N/A
structural_annotation	UHGV-1448046_57	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_58	phrog_556	63.7	2.1e-18	minor head protein	head and packaging
UniRef90	UHGV-1448046_58	UniRef90_UPI000E4989EB	305.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1448046_58	476272.RUMHYD_01780	157.0	0	N/A	N/A
Pfam	UHGV-1448046_58	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1448046_58	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1448046_59	phrog_3266	95.6	3.9e-28	tail completion	connector
eggNOG-mapper	UHGV-1448046_59	476272.RUMHYD_01781	152.0	1.12104e-44	N/A	N/A
structural_annotation	UHGV-1448046_59	PF12691	N/A	N/A	N/A	N/A