UHGV-1449239 (vOTU-058383)

Viral Genome: UHGV-1449239

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1449239
vOTU ID	vOTU-058383
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0251863
Associated BioSample	SAMN02674698
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9583
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.75
Jumbo phage	No

Genome content
Genome length (bp)	36,999
GC content	28.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	87%
Average CDS length (bps)	633.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1449239_1	K18640	132.1	5.7e-39	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-1449239_1	phrog_691	138.9	3.50002e-41	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449239_1	UniRef90_UPI001C8530CB	641.0	0	ParM/StbA family protein	N/A
eggNOG-mapper	UHGV-1449239_1	1443122.Z958_05635	336.0	0	N/A	N/A
Pfam	UHGV-1449239_1	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
structural_annotation	UHGV-1449239_1	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1449239_3	545243.BAEV01000004_gene885	57.4	0.00000000266	N/A	N/A
AcrCatalog	UHGV-1449239_3	cluster_17881	57.0	0.000000000000133	NA	N/A
UniRef90	UHGV-1449239_6	UniRef90_UPI0007082CFE	295.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1449239_6	931276.Cspa_c18000	84.3	5.81e-19	Helix-turn-helix XRE-family like proteins	N/A
structural_annotation	UHGV-1449239_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1449239_7	UniRef90_UPI001C850C00	144.0	1.5134e-43	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1449239_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1449239_7	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
Pfam	UHGV-1449239_9	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
structural_annotation	UHGV-1449239_9	PF09388	N/A	N/A	N/A	N/A
UniRef90	UHGV-1449239_11	UniRef90_UPI001C863C04	101.0	2.07e-27	nucleotide exchange factor GrpE	N/A
PHROG	UHGV-1449239_12	phrog_248	60.0	5.6e-17	transcriptional activator	transcription regulation
UniRef90	UHGV-1449239_12	UniRef90_UPI001C84F4A0	251.0	0	nitroreductase	N/A
eggNOG-mapper	UHGV-1449239_12	1443122.Z958_05945	83.6	7.49e-19	N/A	N/A
NCBIFam	UHGV-1449239_12	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-1449239_12	PF08281,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_13	phrog_323	78.3	1.6e-30	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449239_13	UniRef90_UPI0018970050	159.0	2.52234e-44	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1449239_13	86416.Clopa_2524	124.0	6.11e-32	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-1449239_13	PF13921	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-bind_6
dbAPIS	UHGV-1449239_13	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1449239_13	PF01710,NF040595,COG5147	N/A	N/A	N/A	N/A
KOfam	UHGV-1449239_16	K00558	172.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1449239_16	phrog_116	189.8	0	DNA methyltransferase	other
UniRef90	UHGV-1449239_16	UniRef90_A0A2X3HZ24	587.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1449239_16	1499683.CCFF01000005_gene54	504.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1449239_16	MTase_II_00058	171.6	0	Type II methyltransferase	RM
Pfam	UHGV-1449239_16	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1449239_16	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1449239_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1449239_16	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_17	phrog_463	163.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-1449239_17	UniRef90_UPI001C848E3C	468.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1449239_17	195103.CPF_0930	263.0	0	ORF6C domain	N/A
Pfam	UHGV-1449239_17	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1449239_17	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1449239_17	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1449239_17	PF10552,PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_21	phrog_33682	208.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1449239_21	198094.BA_0453	68.2	0.000000000000613	N/A	N/A
KOfam	UHGV-1449239_22	K04763	91.3	1.4e-26	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1449239_22	phrog_216	144.4	5.29691e-43	integrase	integration and excision
UniRef90	UHGV-1449239_22	UniRef90_UPI00070821FA	391.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1449239_22	457396.CSBG_01042	273.0	0	Phage integrase family	N/A
Pfam	UHGV-1449239_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1449239_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1449239_22	PF00589,MF_01807,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_23	phrog_309	101.3	7.5e-30	terminase small subunit	head and packaging
UniRef90	UHGV-1449239_23	UniRef90_UPI001E3AD56B	302.0	0	Xaa-His dipeptidase	N/A
eggNOG-mapper	UHGV-1449239_23	1414720.CBYM010000001_gene693	186.0	0	N/A	N/A
structural_annotation	UHGV-1449239_23	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1449239_25	K07451	42.1	0.000000000012	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1449239_25	phrog_144	66.1	6.4e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449239_25	UniRef90_UPI001CCACACA	273.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1449239_25	1414720.CBYM010000002_gene577	87.8	2.11e-20	HNH nucleases	N/A
PHROG	UHGV-1449239_26	phrog_83	59.9	4.8e-17	terminase small subunit	head and packaging
UniRef90	UHGV-1449239_26	UniRef90_UPI0003FBB63C	286.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1449239_26	632245.CLP_2921	182.0	0	phage terminase small subunit	N/A
Pfam	UHGV-1449239_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1449239_26	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1449239_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_27	phrog_9	277.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1449239_27	UniRef90_UPI001C85791E	1077.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1449239_27	1414720.CBYM010000001_gene696	718.0	0	Terminase	N/A
Pfam	UHGV-1449239_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1449239_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1449239_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1449239_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_28	phrog_12	206.4	0	portal protein	head and packaging
UniRef90	UHGV-1449239_28	UniRef90_UPI0018E4C584	785.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1449239_28	1414720.CBYM010000001_gene697	363.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1449239_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1449239_28	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1449239_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1449239_28	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1449239_29	K06904	101.7	1.1e-29	N/A	N/A
PHROG	UHGV-1449239_29	phrog_80	130.5	1.9e-38	head maturation protease	head and packaging
UniRef90	UHGV-1449239_29	UniRef90_UPI000E18C982	366.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1449239_29	1414720.CBYM010000001_gene698	261.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1449239_29	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1449239_29	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1449239_29	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1449239_29	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_30	phrog_10	184.0	0	major head protein	head and packaging
UniRef90	UHGV-1449239_30	UniRef90_UPI001C852716	731.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1449239_30	632245.CLP_2694	370.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1449239_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1449239_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1449239_30	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1449239_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_31	phrog_40	43.4	0.0000000000049	head-tail adaptor Ad1	connector
UniRef90	UHGV-1449239_31	UniRef90_UPI00040FE5EE	181.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1449239_31	632245.CLP_2916	58.5	0.000000000492	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1449239_31	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1449239_31	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1449239_31	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_32	phrog_25	55.1	0.0000000000000014	head closure Hc1	connector
UniRef90	UHGV-1449239_32	UniRef90_UPI00040FFAEF	226.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-1449239_32	632245.CLP_2692	90.5	4.13e-22	Phage head-tail joining protein	N/A
Pfam	UHGV-1449239_32	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1449239_32	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1449239_32	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1449239_33	UniRef90_UPI0003F9E7B1	264.0	0	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-1449239_33	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1449239_34	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_36	phrog_88	43.5	0.0000000000043	major tail protein	tail
eggNOG-mapper	UHGV-1449239_36	1414720.CBYM010000049_gene117	69.7	0.00000000000373	phage major tail protein, phi13 family	N/A
structural_annotation	UHGV-1449239_36	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1449239_37	632245.CLP_2688	53.9	0.0000000934	N/A	N/A
structural_annotation	UHGV-1449239_37	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1449239_38	K22804	45.6	0.00000000000029	SMC6; structural maintenance of chromosomes protein 6	N/A
PHROG	UHGV-1449239_38	phrog_1272	340.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1449239_38	UniRef90_A0A6M1WC39	847.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1449239_38	573061.Clocel_3533	225.0	0	tail tape measure protein	N/A
Pfam	UHGV-1449239_38	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1449239_38	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1449239_38	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1449239_38	PF10145,PF05384,TIGR01760,TIGR02559,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_39	phrog_33	84.3	2.2e-24	distal tail protein Dit	tail
UniRef90	UHGV-1449239_39	UniRef90_UPI0018E4830D	458.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1449239_39	999411.HMPREF1092_03310	110.0	8.41e-27	N/A	N/A
Pfam	UHGV-1449239_39	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1449239_39	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1449239_39	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1449239_39	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_40	phrog_1067	295.5	0	minor head protein	head and packaging
UniRef90	UHGV-1449239_40	UniRef90_UPI001C865AC2	1319.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1449239_40	999411.HMPREF1092_03309	427.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1449239_40	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1449239_40	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1449239_40	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1449239_40	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-1449239_41	K02238	69.2	4.2e-20	comEC; competence protein ComEC	N/A
PHROG	UHGV-1449239_41	phrog_27548	947.2	0	N/A	unknown function
UniRef90	UHGV-1449239_41	UniRef90_A0A6M1WBI1	1146.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1449239_41	195103.CPF_1573	737.0	0	competence protein COMEC	N/A
Pfam	UHGV-1449239_41	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-1449239_41	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
COG	UHGV-1449239_41	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
PHROG	UHGV-1449239_42	phrog_23208	401.1	0	virion structural protein	head and packaging
structural_annotation	UHGV-1449239_42	PF10651,PF01105	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_43	phrog_199	88.9	5.2e-26	holin	lysis
UniRef90	UHGV-1449239_43	UniRef90_UPI0018E47BD0	266.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1449239_43	1415774.U728_3791	192.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1449239_43	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1449239_43	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1449239_43	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1449239_43	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1449239_44	K01448	161.0	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1449239_44	phrog_435	206.6	0	endolysin	lysis
UniRef90	UHGV-1449239_44	UniRef90_UPI0003F8E66C	427.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1449239_44	1294142.CINTURNW_2059	148.0	5.13001e-41	Ami_3	N/A
Pfam	UHGV-1449239_44	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1449239_44	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1449239_44	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1449239_45	641107.CDLVIII_4141	47.4	0.00000117	N/A	N/A
KOfam	UHGV-1449239_47	K03466	70.8	1.4e-20	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1449239_47	phrog_1358	116.1	1.7e-34	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1449239_47	UniRef90_A0A6M1VJC8	610.0	0	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-1449239_47	545697.HMPREF0216_01772	116.0	9.43e-26	FtsK/SpoIIIE family	N/A
COG	UHGV-1449239_47	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-1449239_47	PF01580,PF17854,MF_00350,NF041214,COG0433	N/A	N/A	N/A	N/A
PHROG	UHGV-1449239_48	phrog_9996	88.1	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1449239_48	1415774.U728_1053	129.0	7.7e-35	N/A	N/A
structural_annotation	UHGV-1449239_48	PF18954,NF041423,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-1449239_51	K14060	148.2	5.74532e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1449239_51	phrog_125	167.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449239_51	UniRef90_UPI001C865819	367.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1449239_51	272563.CD630_35780	222.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1449239_51	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1449239_51	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
COG	UHGV-1449239_51	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1449239_51	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A