UHGV-1449552 (vOTU-134415)

Viral Genome: UHGV-1449552

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1449552
vOTU ID	vOTU-134415
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-4398206
Associated BioSample	SAMN05827259
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.11 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.05
Jumbo phage	No

Genome content
Genome length (bp)	28,090
GC content	35.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	93%
Average CDS length (bps)	704.92
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1449552_1	phrog_8	88.4	8.1e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-1449552_1	UniRef90_A0A125WAF2	225.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1449552_1	1158609.I586_00046	149.0	1.4013e-45	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1449552_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1449552_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1449552_1	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_2	phrog_1516	254.0	0	N/A	unknown function
UniRef90	UHGV-1449552_2	UniRef90_A0A8A6I6L7	429.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1449552_2	226185.EF_2041	315.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1449552_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1449552_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1449552_2	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_3	phrog_1904	268.0	0	endolysin; lysM motif	lysis
UniRef90	UHGV-1449552_3	UniRef90_A0A125W9M0	389.0	0	LysM domain lipoprotein family protein	N/A
eggNOG-mapper	UHGV-1449552_3	1201292.DR75_1486	192.0	0	LysM domain	N/A
Pfam	UHGV-1449552_3	PF16308	N/A	N/A	N/A	DUF4950
COG	UHGV-1449552_3	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-1449552_4	phrog_806	152.4	1.4013e-45	N/A	unknown function
UniRef90	UHGV-1449552_4	UniRef90_A0A125WAD7	301.0	0	N/A	N/A
eggNOG-mapper	UHGV-1449552_4	1300150.EMQU_2343	239.0	0	N/A	N/A
Pfam	UHGV-1449552_4	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-1449552_4	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-1449552_5	K14059	211.4	0	int; integrase	N/A
PHROG	UHGV-1449552_5	phrog_1	209.7	0	integrase	integration and excision
UniRef90	UHGV-1449552_5	UniRef90_A0A640NQF1	747.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1449552_5	565664.EFXG_01131	538.0	0	Pfam:Integrase_AP2	N/A
Pfam	UHGV-1449552_5	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1449552_5	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1449552_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1449552_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1449552_5	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1449552_6	1158601.I585_04559	102.0	2.29e-25	N/A	N/A
structural_annotation	UHGV-1449552_6	PF08863,NF011240,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_8	phrog_10390	44.3	0.0000000000025	N/A	unknown function
UniRef90	UHGV-1449552_8	UniRef90_E0H9X9	452.0	0	Putative toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-1449552_8	1140002.I570_01801	87.0	1.42e-18	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1449552_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1449552_8	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
KOfam	UHGV-1449552_10	K01447	90.8	2.2e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1449552_10	phrog_833	287.9	0	endolysin	lysis
UniRef90	UHGV-1449552_10	UniRef90_E0HBZ2	748.0	0	SH3 domain protein	N/A
eggNOG-mapper	UHGV-1449552_10	1201292.DR75_1620	752.0	0	Ami_2	N/A
Pfam	UHGV-1449552_10	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1449552_10	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1449552_10	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1449552_10	PF08460,PF01510,PF09629,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_11	phrog_881	127.8	2e-38	holin	lysis
UniRef90	UHGV-1449552_11	UniRef90_A0A0M2AAC9	133.0	1.68e-39	Holin	N/A
eggNOG-mapper	UHGV-1449552_11	1201292.DR75_1493	134.0	6.70998e-41	Putative phage holin Dp-1	N/A
Pfam	UHGV-1449552_11	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1449552_11	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_12	phrog_689	88.7	3.9e-26	holin	lysis
UniRef90	UHGV-1449552_12	UniRef90_D2IYY0	109.0	8.1e-30	Holin	N/A
eggNOG-mapper	UHGV-1449552_12	1201292.DR75_1622	150.0	0	Haemolysin XhlA	N/A
Pfam	UHGV-1449552_12	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-1449552_13	phrog_134	50.1	0.000000000000038	N/A	unknown function
UniRef90	UHGV-1449552_13	UniRef90_A0A826HER6	90.5	3.28e-23	XkdX family protein	N/A
eggNOG-mapper	UHGV-1449552_13	226185.EF_2805	94.4	1.63e-25	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1449552_13	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1449552_13	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1449552_13	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_14	phrog_1536	117.9	6.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-1449552_14	1201292.DR75_1624	229.0	0	N/A	N/A
PHROG	UHGV-1449552_15	phrog_7911	117.2	9e-35	tail protein	tail
UniRef90	UHGV-1449552_15	UniRef90_C9BVF1	102.0	1.58e-24	Predicted protein	N/A
eggNOG-mapper	UHGV-1449552_15	1201292.DR75_1497	351.0	0	N/A	N/A
PHROG	UHGV-1449552_16	phrog_6907	110.1	9.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-1449552_16	272626.lin0173	52.0	0.000000952	N/A	N/A
PHROG	UHGV-1449552_17	phrog_22125	182.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1449552_17	1201292.DR75_1499	187.0	0	N/A	N/A
PHROG	UHGV-1449552_18	phrog_6042	364.8	0	minor head protein	head and packaging
UniRef90	UHGV-1449552_18	UniRef90_R3I0K3	507.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1449552_18	1201292.DR75_1628	517.0	0	N/A	N/A
Pfam	UHGV-1449552_18	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1449552_18	PF10651,NF040788	N/A	N/A	N/A	N/A
KOfam	UHGV-1449552_19	K19304	114.9	4.9e-34	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1449552_19	phrog_1067	705.7	0	minor head protein	head and packaging
UniRef90	UHGV-1449552_19	UniRef90_A0A828QNT0	1702.0	0	Peptidase, M23 family	N/A
eggNOG-mapper	UHGV-1449552_19	1201292.DR75_1501	1642.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1449552_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1449552_19	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1449552_19	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
NCBIFam	UHGV-1449552_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1449552_19	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-1449552_20	phrog_33	78.3	1.7e-22	distal tail protein Dit	tail
UniRef90	UHGV-1449552_20	UniRef90_Q833F7	470.0	0	Tail protein, putative	N/A
eggNOG-mapper	UHGV-1449552_20	1201292.DR75_1502	487.0	0	phage tail	N/A
COG	UHGV-1449552_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1449552_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_21	phrog_1686	219.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1449552_21	UniRef90_A0A640NQ37	1167.0	0	Tail tape measure protein	N/A
eggNOG-mapper	UHGV-1449552_21	1201292.DR75_1503	1165.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1449552_21	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1449552_21	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1449552_21	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1449552_21	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_22	phrog_187	69.9	3.5e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-1449552_22	1201292.DR75_1504	227.0	0	N/A	N/A
KOfam	UHGV-1449552_23	K20846	53.7	0.0000000000000021	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-1449552_23	phrog_88	165.4	0	major tail protein	tail
UniRef90	UHGV-1449552_23	UniRef90_A0A125W444	540.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1449552_23	1201292.DR75_1505	529.0	0	Maj_tail_phi13 phage major tail , phi13 family protein	N/A
Pfam	UHGV-1449552_23	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
NCBIFam	UHGV-1449552_23	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1449552_23	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_24	phrog_525	63.6	3.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1449552_24	1201292.DR75_1506	244.0	0	N/A	N/A
Pfam	UHGV-1449552_24	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-1449552_24	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-1449552_25	UniRef90_UPI0006672BAF	192.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1449552_25	1201292.DR75_1507	259.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1449552_25	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1449552_25	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_26	phrog_615	85.0	7e-25	head-tail adaptor	connector
UniRef90	UHGV-1449552_26	UniRef90_R3KCN7	234.0	0	50S ribosomal protein L23	N/A
eggNOG-mapper	UHGV-1449552_26	1201292.DR75_1508	233.0	0	N/A	N/A
structural_annotation	UHGV-1449552_26	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_27	phrog_132	42.6	0.0000000000084	head-tail adaptor	connector
eggNOG-mapper	UHGV-1449552_27	1201292.DR75_1509	184.0	0	N/A	N/A
PHROG	UHGV-1449552_28	phrog_8832	114.9	1.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-1449552_28	1201292.DR75_1510	117.0	1.51e-33	N/A	N/A
PHROG	UHGV-1449552_29	phrog_1328	221.9	0	major head protein	head and packaging
UniRef90	UHGV-1449552_29	UniRef90_UPI00094A476A	508.0	0	N/A	N/A
eggNOG-mapper	UHGV-1449552_29	1201292.DR75_1511	573.0	0	N/A	N/A
Pfam	UHGV-1449552_29	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-1449552_29	PF17236,MF_04119,NF033394,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_30	phrog_172	85.3	8.6e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-1449552_30	UniRef90_UPI00033113BC	321.0	0	N/A	N/A
eggNOG-mapper	UHGV-1449552_30	1201292.DR75_1512	352.0	0	N/A	N/A
Pfam	UHGV-1449552_30	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1449552_30	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_31	phrog_5859	160.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1449552_31	1201292.DR75_1513	214.0	0	N/A	N/A
structural_annotation	UHGV-1449552_31	PF03927,MF_02200,NF009840,COG3471	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_32	phrog_30662	180.8	0	N/A	unknown function
UniRef90	UHGV-1449552_32	UniRef90_A0A125W463	160.0	0	Coenzyme F420 hydrogenase domain protein	N/A
PHROG	UHGV-1449552_33	phrog_4728	528.4	0	head morphogenesis	head and packaging
UniRef90	UHGV-1449552_33	UniRef90_A0A828QQH8	976.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-1449552_33	1201292.DR75_1515	1101.0	0	cell adhesion	N/A
COG	UHGV-1449552_33	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1449552_33	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1449552_34	phrog_64	289.3	0	portal protein	head and packaging
UniRef90	UHGV-1449552_34	UniRef90_R3KC41	952.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1449552_34	1201292.DR75_1516	946.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1449552_34	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1449552_34	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1449552_35	K06909	408.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1449552_35	phrog_3717	215.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1449552_35	UniRef90_A0A1B1UZZ1	807.0	0	Terminase, large subunit	N/A
eggNOG-mapper	UHGV-1449552_35	1201292.DR75_1517	859.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-1449552_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1449552_35	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1449552_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1449552_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-1449552_35	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-1449552_35	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1449552_36	K07474	98.4	1.5e-28	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1449552_36	phrog_51	121.7	4.9e-36	terminase small subunit	head and packaging
UniRef90	UHGV-1449552_36	UniRef90_A0A125W4K7	300.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1449552_36	1201292.DR75_1518	295.0	0	Terminase small subunit	N/A
Pfam	UHGV-1449552_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1449552_36	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1449552_36	PF03592,COG3728	N/A	N/A	N/A	N/A