UHGV-1453042 (vOTU-013259)

Viral Genome: UHGV-1453042

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1453042
vOTU ID	vOTU-013259
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0303953
Associated BioSample	SAMN02333960
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9747
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.59
Jumbo phage	No

Genome content
Genome length (bp)	47,848
GC content	33.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	77
CDS density	88%
Average CDS length (bps)	547.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1453042_1	phrog_119	61.1	1.8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1453042_1	UniRef90_A0A395WA48	259.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1453042_1	1211814.CAPG01000074_gene3460	66.2	0.00000000000149	HNH endonuclease	N/A
Pfam	UHGV-1453042_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1453042_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1453042_6	1403948.Q618_VCMC00003G0140	98.2	3.61e-23	N/A	N/A
COG	UHGV-1453042_7	COG4842	N/A	N/A	Secreted virulence factor YukE/EsxA, WXG100 family	N/A
PHROG	UHGV-1453042_10	phrog_88	55.7	6.6e-16	major tail protein	tail
eggNOG-mapper	UHGV-1453042_10	1154860.SAG0136_11470	54.3	0.00000276	phage tail protein	N/A
PHROG	UHGV-1453042_11	phrog_2316	41.1	0.00000000003	N/A	unknown function
UniRef90	UHGV-1453042_11	UniRef90_A0A3E4YBW5	120.0	1.42e-33	N/A	N/A
eggNOG-mapper	UHGV-1453042_11	1007103.AFHW01000207_gene1752	57.8	0.000000000624	N/A	N/A
structural_annotation	UHGV-1453042_11	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
UniRef90	UHGV-1453042_12	UniRef90_A0A413UEX6	285.0	0	N/A	N/A
Pfam	UHGV-1453042_12	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1453042_12	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1453042_16	PF11061	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1453042_19	428127.EUBDOL_01238	79.7	4.92e-18	N/A	N/A
structural_annotation	UHGV-1453042_23	PF19801	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1453042_24	PF17888	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_25	phrog_173	98.2	9.4e-29	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1453042_25	UniRef90_UPI001C25836D	194.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-1453042_25	1298598.JCM21714_1731	73.6	0.0000000000000396	dUTPase	N/A
Pfam	UHGV-1453042_25	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-1453042_25	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-1453042_25	PF08761,COG4508	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_26	phrog_236	103.7	2.1e-30	nucleotide kinase	other
UniRef90	UHGV-1453042_26	UniRef90_UPI001C27E010	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-1453042_26	546273.VEIDISOL_00707	75.9	0.00000000000000493	N/A	N/A
Pfam	UHGV-1453042_26	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1453042_26	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_27	phrog_774	62.3	6.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1453042_27	397290.C810_05225	66.2	0.00000000000358	N/A	N/A
UniRef90	UHGV-1453042_30	UniRef90_R6T064	76.6	0.000000000000111	NUMOD4 domain-containing protein	N/A
structural_annotation	UHGV-1453042_30	PF13392,PF07453	N/A	N/A	N/A	N/A
KOfam	UHGV-1453042_31	K02315	120.5	1.9e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1453042_31	phrog_50	108.5	7.6e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1453042_31	UniRef90_A0A395WER8	541.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1453042_31	1232446.BAIE02000011_gene1611	133.0	4.47e-35	N/A	N/A
Pfam	UHGV-1453042_31	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-1453042_31	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1453042_31	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_32	phrog_428	145.2	4.90454e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1453042_32	UniRef90_A0A395WBX6	414.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1453042_32	279808.SH2379	152.0	2.68068e-42	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1453042_32	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1453042_32	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1453042_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1453042_32	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1453042_34	PF07378,MF_00783,COG5443	N/A	N/A	N/A	N/A
KOfam	UHGV-1453042_35	K04763	132.8	3.7e-39	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1453042_35	phrog_1	114.9	8.6e-34	integrase	integration and excision
UniRef90	UHGV-1453042_35	UniRef90_A0A395W9T7	577.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1453042_35	999413.HMPREF1094_02021	226.0	0	Phage integrase family	N/A
Pfam	UHGV-1453042_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1453042_35	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1453042_35	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1453042_39	K18830	60.3	2.9e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1453042_39	phrog_8	45.7	0.0000000000008	transcriptional regulator	transcription regulation
UniRef90	UHGV-1453042_39	UniRef90_A0A395WA05	259.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1453042_39	999413.HMPREF1094_02045	96.7	6.1e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1453042_39	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1453042_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1453042_39	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_40	phrog_4980	126.1	3.3e-37	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1453042_40	658086.HMPREF0994_06731	85.5	5.78e-16	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1453042_40	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1453042_40	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1453042_40	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-1453042_42	K14059	197.9	0	int; integrase	N/A
PHROG	UHGV-1453042_42	phrog_1	178.4	0	integrase	integration and excision
UniRef90	UHGV-1453042_42	UniRef90_A0A395WBW7	739.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1453042_42	1235796.C815_00955	298.0	0	DNA integration	N/A
Pfam	UHGV-1453042_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1453042_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1453042_42	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1453042_43	K01447	60.6	3.2e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1453042_43	phrog_7698	153.9	1.4013e-45	endolysin	lysis
UniRef90	UHGV-1453042_43	UniRef90_UPI001D0AA402	534.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1453042_43	1125712.HMPREF1316_2631	145.0	2.41e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1453042_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1453042_43	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1453042_43	COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_45	phrog_443	51.6	0.000000000000025	holin	lysis
UniRef90	UHGV-1453042_45	UniRef90_A0A2U2ELA1	77.4	2.62e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-1453042_45	476272.RUMHYD_01759	83.6	2.2e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1453042_45	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1453042_45	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_47	phrog_20016	64.5	1.3e-18	N/A	unknown function
UniRef90	UHGV-1453042_47	UniRef90_A0A395WF88	261.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1453042_47	1226322.HMPREF1545_00077	62.4	0.000000000212	N/A	N/A
Pfam	UHGV-1453042_47	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-1453042_47	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1453042_48	UniRef90_A0A8F0WFQ8	70.1	0.0000000000748	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-1453042_48	476272.RUMHYD_01770	112.0	3.53e-28	N/A	N/A
PHROG	UHGV-1453042_53	phrog_24451	90.6	1.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-1453042_53	908340.HMPREF9406_2565	82.4	7.38e-19	N/A	N/A
PHROG	UHGV-1453042_54	phrog_4492	56.0	1.1e-17	tail fiber protein	tail
eggNOG-mapper	UHGV-1453042_54	756499.Desde_1105	58.9	0.000000811	N/A	N/A
structural_annotation	UHGV-1453042_54	PF03425,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_57	phrog_19280	91.5	6.4e-27	N/A	unknown function
UniRef90	UHGV-1453042_57	UniRef90_A0A413UF00	655.0	0	N/A	N/A
Pfam	UHGV-1453042_57	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1453042_57	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1453042_58	1232452.BAIB02000007_gene1610	68.6	0.000000000304	N/A	N/A
structural_annotation	UHGV-1453042_59	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1453042_60	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1453042_61	537007.BLAHAN_05252	55.1	0.00000214	N/A	N/A
structural_annotation	UHGV-1453042_61	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_62	phrog_1067	48.9	1.4e-24	minor head protein	head and packaging
eggNOG-mapper	UHGV-1453042_62	1232446.BAIE02000002_gene836	60.8	0.000000744	Phage minor structural protein	N/A
Pfam	UHGV-1453042_62	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-1453042_62	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1453042_62	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1453042_62	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_63	phrog_33	50.8	0.000000000000039	distal tail protein Dit	tail
UniRef90	UHGV-1453042_63	UniRef90_A0A1C6JHE5	62.4	0.0000000561	Phage-related protein	N/A
Pfam	UHGV-1453042_63	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1453042_63	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1453042_63	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1453042_63	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1453042_64	K20282	63.6	2.6e-19	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1453042_64	phrog_13339	342.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1453042_64	UniRef90_A0A395WD11	958.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1453042_64	999425.HMPREF9186_02045	246.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1453042_64	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1453042_64	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1453042_64	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1453042_64	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1453042_66	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_67	phrog_88	140.4	9.30042e-42	major tail protein	tail
UniRef90	UHGV-1453042_67	UniRef90_A0A395WA58	404.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1453042_67	1033744.CAEL01000029_gene1276	157.0	1.4013e-45	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1453042_67	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1453042_67	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1453042_68	UniRef90_A0A374RUJ8	140.0	2.04e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1453042_68	86416.Clopa_0344	58.2	0.00000000637	N/A	N/A
structural_annotation	UHGV-1453042_68	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1453042_69	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_70	phrog_1951	71.8	6.3e-21	head-tail adaptor	connector
UniRef90	UHGV-1453042_70	UniRef90_A0A395WC07	224.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1453042_70	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-1453042_70	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1453042_70	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1453042_70	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_71	phrog_5223	51.3	0.000000000000015	neck protein	connector
UniRef90	UHGV-1453042_71	UniRef90_A0A374RXD1	82.4	1.54e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-1453042_71	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_72	phrog_10	83.8	2.4e-24	major head protein	head and packaging
UniRef90	UHGV-1453042_72	UniRef90_A0A395WF70	805.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1453042_72	1536774.H70357_10630	168.0	1.26117e-44	Phage capsid family	N/A
Pfam	UHGV-1453042_72	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1453042_72	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1453042_72	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1453042_72	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1453042_73	K06904	86.1	4.8e-25	N/A	N/A
PHROG	UHGV-1453042_73	phrog_80	116.9	2.5e-34	head maturation protease	head and packaging
UniRef90	UHGV-1453042_73	UniRef90_A0A413UET6	352.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1453042_73	411470.RUMGNA_02064	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1453042_73	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1453042_73	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1453042_73	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1453042_73	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_74	phrog_12	103.6	1.4e-30	portal protein	head and packaging
UniRef90	UHGV-1453042_74	UniRef90_A0A395W9X2	821.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1453042_74	1203606.HMPREF1526_01337	291.0	0	Portal protein	N/A
Pfam	UHGV-1453042_74	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1453042_74	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1453042_74	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_75	phrog_9	308.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1453042_75	UniRef90_A0A395WD03	1124.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1453042_75	742740.HMPREF9474_04307	549.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-1453042_75	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1453042_75	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1453042_75	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1453042_75	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_76	phrog_361	74.5	1.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1453042_76	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1453042_76	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-1453042_76	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1453042_76	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1453042_76	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1453042_77	phrog_144	58.1	2.2e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1453042_77	UniRef90_A0A395WA48	265.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1453042_77	1211814.CAPG01000074_gene3460	65.9	0.0000000000083	HNH endonuclease	N/A
Pfam	UHGV-1453042_77	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1453042_77	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A