UHGV-1455507 (vOTU-106400)

Viral Genome: UHGV-1455507

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1455507
vOTU ID	vOTU-106400
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0303589
Associated BioSample	SAMEA2042572
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.82 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.88
Jumbo phage	No

Genome content
Genome length (bp)	47,719
GC content	48.39%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	89
CDS density	85%
Average CDS length (bps)	457.69
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1455507_1	K14060	143.1	2.20004e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1455507_1	phrog_125	172.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455507_1	UniRef90_A0A3E2UAG1	233.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1455507_1	1280664.AUIX01000018_gene2067	216.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1455507_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1455507_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1455507_1	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1455507_2	PF20075	N/A	N/A	N/A	N/A
Pfam	UHGV-1455507_4	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1455507_4	PF01402,NF041284,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1455507_5	K07741	76.2	4.2e-22	antB; anti-repressor protein	N/A
PHROG	UHGV-1455507_5	phrog_373	129.4	3.1e-38	anti-repressor	transcription regulation
UniRef90	UHGV-1455507_5	UniRef90_UPI001C039A6C	172.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1455507_5	416870.llmg_0797	141.0	1.76e-38	ORF6C domain	N/A
Pfam	UHGV-1455507_5	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1455507_5	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1455507_5	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1455507_5	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1455507_7	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
COG	UHGV-1455507_7	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-1455507_7	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_10	phrog_434	42.8	0.0000000000081	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1455507_10	88870.Q9ZX24_BPMT4	50.1	0.000000843	N/A	N/A
PHROG	UHGV-1455507_12	phrog_1709	61.1	1.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-1455507_12	1280686.AUKE01000002_gene1328	79.0	5.84e-18	N/A	N/A
PHROG	UHGV-1455507_14	phrog_419	110.3	1.9e-32	N/A	unknown function
UniRef90	UHGV-1455507_14	UniRef90_A6MAI4	150.0	1.4013e-45	Gp119	N/A
eggNOG-mapper	UHGV-1455507_14	365659.smi_0447	155.0	0	N/A	N/A
structural_annotation	UHGV-1455507_14	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-1455507_15	K02314	210.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1455507_15	phrog_19	216.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455507_15	UniRef90_UPI001CBC4B63	422.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1455507_15	1203606.HMPREF1526_01325	156.0	2.21999e-40	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1455507_15	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1455507_15	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1455507_15	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_16	phrog_15768	87.2	2.1e-26	N/A	unknown function
UniRef90	UHGV-1455507_16	UniRef90_A0A6N7WKT0	92.0	3.18e-19	N/A	N/A
eggNOG-mapper	UHGV-1455507_16	748224.HMPREF9436_03357	79.3	0.0000000000000043	N/A	N/A
Pfam	UHGV-1455507_16	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1455507_16	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_17	phrog_599	49.7	0.00000000000008	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1455507_17	UniRef90_A0A3R6FRA8	86.3	2.14e-20	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-1455507_17	1235790.C805_00069	84.0	2.13e-20	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1455507_17	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1455507_17	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1455507_17	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_25	phrog_3136	126.0	1.5e-37	N/A	unknown function
UniRef90	UHGV-1455507_25	UniRef90_UPI001CBCD733	139.0	1.11e-38	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1455507_25	394503.Ccel_3165	71.6	0.000000000000137	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1455507_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1455507_25	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-1455507_26	UniRef90_UPI0012DD33A2	310.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1455507_26	596329.HMPREF0631_0252	218.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1455507_26	MTase_II_00176	168.3	0	Type II methyltransferase	RM
COG	UHGV-1455507_26	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-1455507_28	PF16677	N/A	N/A	N/A	N/A
Pfam	UHGV-1455507_29	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1455507_31	PF09723	N/A	N/A	N/A	N/A
UniRef90	UHGV-1455507_32	UniRef90_UPI0006DCB293	77.4	1.49e-16	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1455507_32	1408437.JNJN01000032_gene2312	66.6	0.00000000000574	Phosphoadenosine phosphosulfate reductase	N/A
COG	UHGV-1455507_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
KOfam	UHGV-1455507_33	K00390	110.2	1.5e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1455507_33	phrog_424	118.8	4.5e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1455507_33	UniRef90_A0A1Y4LU27	298.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1455507_33	1408437.JNJN01000032_gene2312	275.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1455507_33	BrxP_00001	80.4	6.6e-24	BrxP	BREX
Pfam	UHGV-1455507_33	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1455507_33	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1455507_33	PF01507,MF_00064,TIGR02039,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_35	phrog_843	62.3	5e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455507_35	UniRef90_UPI001159D907	110.0	1.45e-27	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1455507_35	929506.CbC4_1203	102.0	4.29e-25	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1455507_35	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_38	phrog_757	172.4	0	DNA methyltransferase	other
UniRef90	UHGV-1455507_38	UniRef90_UPI001C00B13F	440.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1455507_38	748224.HMPREF9436_03069	325.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1455507_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1455507_38	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1455507_39	K03111	117.7	1.5e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1455507_39	phrog_44	124.9	6.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455507_39	UniRef90_A0A6N7TNV3	156.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1455507_39	748224.HMPREF9436_03359	151.0	2.8026e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1455507_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1455507_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1455507_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1455507_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1455507_39	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_40	phrog_155	149.7	1.54143e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455507_40	UniRef90_E2ZNS9	272.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-1455507_40	748224.HMPREF9436_03360	272.0	0	ERF superfamily	N/A
Pfam	UHGV-1455507_40	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1455507_40	PF04404,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-1455507_41	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
COG	UHGV-1455507_41	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
structural_annotation	UHGV-1455507_41	PF13451	N/A	N/A	N/A	N/A
COG	UHGV-1455507_43	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1455507_43	PF04606,NF007241	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1455507_44	PF14143	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1455507_46	TIGR03826	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1455507_48	PF10922	N/A	N/A	N/A	N/A
UniRef90	UHGV-1455507_50	UniRef90_A0A7X1LWA7	80.5	2.17e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1455507_50	428125.CLOLEP_02737	59.7	0.0000000000581	N/A	N/A
structural_annotation	UHGV-1455507_50	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_51	phrog_8	56.0	9.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1455507_51	UniRef90_A0A373XY93	94.7	8.31e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1455507_51	665956.HMPREF1032_02614	65.1	0.00000000000432	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1455507_51	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1455507_51	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1455507_55	UniRef90_A0A2A7AM70	190.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1455507_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1455507_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1455507_55	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_56	phrog_4402	109.5	2.8e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455507_56	UniRef90_A0A0H5Q331	265.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1455507_56	999413.HMPREF1094_04438	147.0	2.59e-38	Initiator Replication protein	N/A
Pfam	UHGV-1455507_56	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1455507_56	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1455507_56	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1455507_56	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
KOfam	UHGV-1455507_58	K03496	236.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1455507_58	phrog_164	159.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1455507_58	UniRef90_A0A1C6BS15	209.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1455507_58	1408423.JHYA01000021_gene392	192.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1455507_58	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1455507_58	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1455507_58	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-1455507_59	UniRef90_UPI000806E2B4	52.4	0.00000325	N/A	N/A
Pfam	UHGV-1455507_59	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1455507_60	PF07878	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_61	phrog_11947	43.3	0.0000000000047	N/A	unknown function
Pfam	UHGV-1455507_65	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-1455507_67	1378168.N510_03079	95.1	6.4e-21	N/A	N/A
eggNOG-mapper	UHGV-1455507_68	1408437.JNJN01000043_gene802	122.0	3.18e-34	N/A	N/A
PHROG	UHGV-1455507_69	phrog_16490	99.2	7.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-1455507_69	658655.HMPREF0988_00917	112.0	7.33e-27	N/A	N/A
PHROG	UHGV-1455507_73	phrog_15303	83.1	2.6e-24	N/A	unknown function
KOfam	UHGV-1455507_75	K07273	159.2	0	acm; lysozyme	N/A
PHROG	UHGV-1455507_75	phrog_291	121.3	8.8e-36	endolysin	lysis
UniRef90	UHGV-1455507_75	UniRef90_A0A564U0D3	328.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1455507_75	718252.FP2_04890	281.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1455507_75	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1455507_75	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1455507_75	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1455507_76	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1455507_78	748224.HMPREF9436_00405	102.0	4.73e-23	domain, Protein	N/A
COG	UHGV-1455507_78	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1455507_78	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_79	phrog_23587	75.7	7.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-1455507_79	748224.HMPREF9436_00405	117.0	5.36e-26	domain, Protein	N/A
COG	UHGV-1455507_79	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1455507_79	MF_04106	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_81	phrog_18725	72.0	8e-21	N/A	unknown function
eggNOG-mapper	UHGV-1455507_81	1226322.HMPREF1545_00062	89.4	2.29e-20	N/A	N/A
PHROG	UHGV-1455507_82	phrog_13879	238.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1455507_82	324057.Pjdr2_1554	147.0	1.48e-35	N/A	N/A
structural_annotation	UHGV-1455507_82	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_83	phrog_1194	81.0	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1455507_83	665956.HMPREF1032_03629	53.9	0.00000023	N/A	N/A
Pfam	UHGV-1455507_83	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1455507_83	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_84	phrog_1535	178.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1455507_84	1121866.AUGK01000003_gene1437	204.0	0	phage tail tape measure protein	N/A
COG	UHGV-1455507_84	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-1455507_85	1121333.JMLH01000047_gene1011	78.2	1.38e-16	N/A	N/A
eggNOG-mapper	UHGV-1455507_86	1123263.AUKY01000015_gene1618	61.2	0.000000000137	N/A	N/A
Pfam	UHGV-1455507_86	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1455507_86	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1455507_87	phrog_158	44.3	0.0000000000029	major tail protein	tail
UniRef90	UHGV-1455507_87	UniRef90_UPI001D087591	113.0	2.02e-29	phage tail protein	N/A
eggNOG-mapper	UHGV-1455507_87	1449343.JQLQ01000002_gene1514	55.5	0.000000147	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1455507_87	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1455507_88	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A