UHGV-1456216 (vOTU-085282)

Viral Genome: UHGV-1456216

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1456216
vOTU ID	vOTU-085282
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0284317
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.977
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.41
Jumbo phage	No

Genome content
Genome length (bp)	43,041
GC content	42.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	93%
Average CDS length (bps)	535.48
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1456216_1	phrog_27197	48.8	0.00000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1456216_1	445970.ALIPUT_01592	79.3	3.18e-16	DNA-templated transcription, initiation	N/A
COG	UHGV-1456216_1	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
PHROG	UHGV-1456216_2	phrog_72	71.4	9.5e-21	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456216_2	UniRef90_A0A8D9PDS2	126.0	9.71e-34	NinB protein	N/A
eggNOG-mapper	UHGV-1456216_2	1507.HMPREF0262_00432	120.0	2.72e-32	N/A	N/A
structural_annotation	UHGV-1456216_2	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_3	phrog_25385	52.5	0.0000000000000073	N/A	unknown function
eggNOG-mapper	UHGV-1456216_3	718252.FP2_16450	52.4	0.000000389	N/A	N/A
KOfam	UHGV-1456216_4	K03111	137.5	1.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1456216_4	phrog_44	127.7	8.4e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456216_4	UniRef90_A0A645FRU2	167.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1456216_4	1321814.HMPREF9089_01469	160.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1456216_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1456216_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1456216_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1456216_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1456216_4	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_7	phrog_1374	44.8	0.0000000000014	N/A	unknown function
PHROG	UHGV-1456216_9	phrog_21026	43.4	0.0000000000036	N/A	unknown function
PHROG	UHGV-1456216_10	phrog_21026	40.5	0.000000000021	N/A	unknown function
PHROG	UHGV-1456216_11	phrog_21026	59.9	4.4e-17	N/A	unknown function
PHROG	UHGV-1456216_12	phrog_419	70.3	3.9e-20	N/A	unknown function
UniRef90	UHGV-1456216_12	UniRef90_A0A4U9RIR3	96.7	3.41e-24	N/A	N/A
eggNOG-mapper	UHGV-1456216_12	476272.RUMHYD_03324	100.0	1.05e-26	N/A	N/A
structural_annotation	UHGV-1456216_12	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_13	phrog_20593	42.0	0.000000000012	N/A	unknown function
structural_annotation	UHGV-1456216_13	PF07870,TIGR02501	N/A	N/A	N/A	N/A
KOfam	UHGV-1456216_15	K00571	187.7	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1456216_15	phrog_67	185.7	0	DNA methyltransferase	other
UniRef90	UHGV-1456216_15	UniRef90_A0A0R1MQE6	279.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1456216_15	574376.BAMA_16525	251.0	0	DNA methylase	N/A
PADLOC	UHGV-1456216_15	MTase_II_00037	166.0	0	Type II methyltransferase	RM
Pfam	UHGV-1456216_15	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1456216_15	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1456216_15	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_16	phrog_1672	47.9	0.00000000000021	N/A	unknown function
eggNOG-mapper	UHGV-1456216_16	1443122.Z958_05695	51.2	0.00000209	N/A	N/A
Pfam	UHGV-1456216_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-1456216_23	phrog_10714	45.3	0.0000000000012	N/A	unknown function
PHROG	UHGV-1456216_24	phrog_1770	112.7	2.7e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456216_24	UniRef90_A0A6I6SPG8	91.7	1.23e-20	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-1456216_24	1115515.EV102420_06_00190	83.2	3.39e-18	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1456216_24	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1456216_24	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_26	phrog_36	52.6	0.000000000000008	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1456216_26	PF05263,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1456216_31	PF09392	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1456216_32	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_33	phrog_38	352.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1456216_33	UniRef90_A0A845QMQ7	593.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1456216_33	755731.Clo1100_2438	439.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-1456216_33	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1456216_33	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1456216_33	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1456216_33	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1456216_33	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_35	phrog_156	105.4	1e-31	portal protein	head and packaging
eggNOG-mapper	UHGV-1456216_35	1232449.BAHV02000016_gene1822	392.0	0	N/A	N/A
structural_annotation	UHGV-1456216_35	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_37	phrog_267	101.2	1e-29	major head protein	head and packaging
UniRef90	UHGV-1456216_37	UniRef90_A0A4R3KBP0	150.0	1.48e-40	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1456216_37	665956.HMPREF1032_03906	251.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1456216_37	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1456216_38	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_40	phrog_3287	98.6	4.6e-29	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1456216_40	1232449.BAHV02000016_gene1816	283.0	0	N/A	N/A
structural_annotation	UHGV-1456216_40	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_41	phrog_21765	45.6	0.00000000000092	N/A	unknown function
eggNOG-mapper	UHGV-1456216_41	1235793.C809_01950	81.3	0.0000000000000511	Phage tail-collar fibre protein	N/A
COG	UHGV-1456216_41	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-1456216_42	phrog_37900	49.4	0.0000000000000075	N/A	unknown function
UniRef90	UHGV-1456216_42	UniRef90_UPI001D07731B	113.0	4.43e-25	N/A	N/A
eggNOG-mapper	UHGV-1456216_42	693746.OBV_22720	172.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-1456216_42	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
Pfam	UHGV-1456216_42	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1456216_42	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1456216_42	PF19789,PF14686,TIGR04183,COG2512	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1456216_44	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1456216_44	NF040910	N/A	N/A	N/A	N/A
UniRef90	UHGV-1456216_50	UniRef90_A0A845QMU2	557.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1456216_50	1408437.JNJN01000060_gene452	320.0	0	heme binding	N/A
COG	UHGV-1456216_50	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-1456216_51	phrog_4105	80.0	2.1e-23	N/A	unknown function
UniRef90	UHGV-1456216_51	UniRef90_A0A8D9UHA9	67.8	0.00000000000153	Holin protein	N/A
eggNOG-mapper	UHGV-1456216_51	428125.CLOLEP_01431	76.3	1.63e-16	N/A	N/A
PHROG	UHGV-1456216_52	phrog_443	54.0	0.0000000000000046	holin	lysis
UniRef90	UHGV-1456216_52	UniRef90_A0A1I1Y2T2	89.4	3.45e-22	Phage r1t holin	N/A
eggNOG-mapper	UHGV-1456216_52	1469948.JPNB01000002_gene3855	86.7	6.77e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1456216_52	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1456216_52	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1456216_53	K01448	114.9	8.2e-34	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1456216_53	phrog_435	168.2	0	endolysin	lysis
UniRef90	UHGV-1456216_53	UniRef90_B0MAM2	201.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1456216_53	411490.ANACAC_00597	201.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-1456216_53	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1456216_53	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1456216_53	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-1456216_54	UniRef90_A0A350H2J1	49.3	0.00000384	HTH luxR-type domain-containing protein	N/A
structural_annotation	UHGV-1456216_54	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_55	phrog_21718	56.3	5.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-1456216_55	476272.RUMHYD_01768	67.8	0.00000000000112	N/A	N/A
structural_annotation	UHGV-1456216_57	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-1456216_59	K14059	208.7	0	int; integrase	N/A
PHROG	UHGV-1456216_59	phrog_1	207.4	0	integrase	integration and excision
UniRef90	UHGV-1456216_59	UniRef90_A0A858BPV1	268.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1456216_59	397290.C810_00805	256.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1456216_59	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1456216_59	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1456216_59	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1456216_59	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1456216_59	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-1456216_60	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
PHROG	UHGV-1456216_62	phrog_8	49.5	0.000000000000088	transcriptional regulator	transcription regulation
UniRef90	UHGV-1456216_62	UniRef90_UPI000BA57F70	75.5	0.00000000000000699	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1456216_62	1285586.H131_11663	57.0	0.0000000102	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1456216_62	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1456216_63	phrog_8	47.4	0.00000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-1456216_63	UniRef90_T5JYM7	52.4	0.000000488	Cro/Cl family transcriptional regulator	N/A
Pfam	UHGV-1456216_63	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1456216_63	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1456216_63	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_64	phrog_989	81.5	4.8e-24	N/A	unknown function
UniRef90	UHGV-1456216_64	UniRef90_Q8SBM7	73.9	2.83e-16	Gp27 protein	N/A
eggNOG-mapper	UHGV-1456216_64	1540257.JQMW01000013_gene708	71.2	5.55e-16	N/A	N/A
KOfam	UHGV-1456216_65	K08309	51.1	0.000000000000017	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-1456216_65	phrog_19349	148.9	1.96182e-44	N/A	unknown function
UniRef90	UHGV-1456216_65	UniRef90_UPI000DE563D6	139.0	2.59e-38	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1456216_65	742740.HMPREF9474_02375	129.0	1.19e-34	lytic transglycosylase activity	N/A
Pfam	UHGV-1456216_65	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1456216_65	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1456216_65	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_68	phrog_8489	268.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456216_68	UniRef90_A0A174X4J3	247.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-1456216_68	1139219.I569_01402	231.0	0	DnaD domain protein	N/A
COG	UHGV-1456216_68	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1456216_68	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_69	phrog_9804	120.2	1.5e-35	N/A	unknown function
UniRef90	UHGV-1456216_69	UniRef90_A0A1C5T9U7	168.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-1456216_69	585394.RHOM_14005	119.0	2.13e-31	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-1456216_69	cluster_137185	113.0	5.62e-34	NA	N/A
Pfam	UHGV-1456216_69	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1456216_69	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_70	phrog_2113	59.3	4.1e-17	N/A	unknown function
PHROG	UHGV-1456216_72	phrog_155	89.0	6.1e-26	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456216_72	UniRef90_UPI0018AC33A4	200.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1456216_72	1497679.EP56_08440	84.0	6.54e-17	ERF superfamily	N/A
Pfam	UHGV-1456216_72	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1456216_72	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_73	phrog_674	138.5	2.49992e-42	N/A	unknown function
UniRef90	UHGV-1456216_73	UniRef90_A0A6N7XHF2	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-1456216_73	1095750.HMPREF9970_1676	156.0	7.14662e-44	N/A	N/A
Pfam	UHGV-1456216_73	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1456216_73	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1456216_74	phrog_7370	71.4	9.5e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456216_74	UniRef90_A0A498CPV0	135.0	2.64e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1456216_74	358681.BBR47_35660	50.8	0.00000139	HNH endonuclease	N/A
Pfam	UHGV-1456216_74	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1456216_74	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1456216_75	phrog_4433	76.9	2.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1456216_75	886882.PPSC2_p0048	106.0	1.87e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1456216_75	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A