UHGV-1456804 (vOTU-061385)

Viral Genome: UHGV-1456804

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1456804
vOTU ID	vOTU-061385
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0314847
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9744
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.25
Jumbo phage	No

Genome content
Genome length (bp)	51,833
GC content	55.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	95%
Average CDS length (bps)	836.19
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1456804_1	K14059	238.3	0	int; integrase	N/A
PHROG	UHGV-1456804_1	phrog_1	195.2	0	integrase	integration and excision
UniRef90	UHGV-1456804_1	UniRef90_A0A120KRI5	554.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1456804_1	679201.HMPREF9334_00660	696.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1456804_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1456804_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1456804_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1456804_1	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_3	phrog_10226	199.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1456804_3	1009370.ALO_02311	178.0	0	N/A	N/A
structural_annotation	UHGV-1456804_3	PF01878,COG4127	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_8	phrog_87	69.8	3e-20	metallo-protease	other
UniRef90	UHGV-1456804_8	UniRef90_G5GM12	213.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1456804_8	679201.HMPREF9334_00293	213.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1456804_8	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1456804_8	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1456804_8	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_9	K22299	54.2	0.0000000000000035	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1456804_9	phrog_8	55.9	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1456804_9	UniRef90_D4S844	181.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1456804_9	585503.HMPREF7545_1709	181.0	0	Transcriptional	N/A
Pfam	UHGV-1456804_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1456804_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1456804_9	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1456804_10	UniRef90_E0NZM0	127.0	1.25e-36	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1456804_10	864563.HMPREF9166_1287	127.0	2.09e-37	sequence-specific DNA binding	N/A
Pfam	UHGV-1456804_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1456804_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1456804_10	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_11	phrog_29674	57.9	1.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1456804_11	1217715.F994_01643	62.0	0.000000000102	N/A	N/A
UniRef90	UHGV-1456804_13	UniRef90_A0A089HWC6	79.0	3.38e-18	Regulatory protein	N/A
eggNOG-mapper	UHGV-1456804_13	431943.CKL_2011	81.6	4.97e-20	N/A	N/A
Pfam	UHGV-1456804_13	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-1456804_13	PF03869,NF008671,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-1456804_14	UniRef90_E0NXM6	82.0	9.32e-20	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-1456804_14	864563.HMPREF9166_0593	82.0	1.56e-20	N/A	N/A
Pfam	UHGV-1456804_16	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-1456804_17	phrog_30153	133.0	9.7e-40	N/A	unknown function
UniRef90	UHGV-1456804_17	UniRef90_E0NZL4	175.0	0	LysM domain protein	N/A
eggNOG-mapper	UHGV-1456804_17	864563.HMPREF9166_1281	175.0	0	LysM domain	N/A
Pfam	UHGV-1456804_17	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1456804_17	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1456804_17	MF_02014,NF010723	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_18	K21919	105.9	3.7e-31	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1456804_18	phrog_923	101.7	3.1e-31	N/A	unknown function
UniRef90	UHGV-1456804_18	UniRef90_A0A6I2UGQ0	57.8	0.000000927	Pentapeptide repeat-containing protein	N/A
Pfam	UHGV-1456804_18	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-1456804_18	PF13599,NF011744	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_20	phrog_6744	220.6	0	N/A	unknown function
UniRef90	UHGV-1456804_20	UniRef90_UPI001D0356E6	254.0	0	N/A	N/A
eggNOG-mapper	UHGV-1456804_20	1348657.M622_19425	248.0	0	N/A	N/A
Pfam	UHGV-1456804_20	PF12083	N/A	N/A	N/A	DUF3560
COG	UHGV-1456804_20	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
structural_annotation	UHGV-1456804_20	PF12083	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_24	K03546	81.4	7.2e-25	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1456804_24	phrog_77	198.0	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456804_24	UniRef90_A0A6I2UZW8	469.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1456804_24	537013.CLOSTMETH_01714	309.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1456804_24	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1456804_24	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1456804_24	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_25	phrog_561	182.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456804_25	UniRef90_UPI001D032ADE	324.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1456804_25	557598.LHK_01792	228.0	0	N/A	N/A
Pfam	UHGV-1456804_25	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1456804_25	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_26	K06167	71.4	1.2e-20	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1456804_26	phrog_392	229.8	0	metal-dependent hydrolase	other
UniRef90	UHGV-1456804_26	UniRef90_A0A0J6WU31	266.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-1456804_26	537013.CLOSTMETH_01716	219.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1456804_26	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-1456804_26	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1456804_26	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1456804_26	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_27	phrog_398	191.8	0	N/A	unknown function
UniRef90	UHGV-1456804_27	UniRef90_J5HVT6	281.0	0	PF06147 family protein	N/A
eggNOG-mapper	UHGV-1456804_27	585503.HMPREF7545_1716	380.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1456804_27	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1456804_27	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_30	phrog_678	76.6	4.8e-22	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456804_30	UniRef90_A0A0X8KA38	80.9	0.0000000000000294	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1456804_30	1499683.CCFF01000013_gene501	79.3	0.0000000000000177	phage replisome	N/A
structural_annotation	UHGV-1456804_30	PF04492,MF_01911,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_31	K02315	177.5	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1456804_31	phrog_50	159.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456804_31	UniRef90_UPI001F004CEF	404.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1456804_31	585503.HMPREF7545_1719	328.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1456804_31	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1456804_31	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1456804_31	PF01695,MF_01158,NF006505,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_34	phrog_190	139.6	1.70006e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456804_34	UniRef90_J4KCN7	221.0	0	PF06356 family protein	N/A
eggNOG-mapper	UHGV-1456804_34	936573.HMPREF1147_1709	221.0	0	N/A	N/A
Pfam	UHGV-1456804_34	PF06356	N/A	N/A	N/A	DUF1064
KOfam	UHGV-1456804_35	K00558	225.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1456804_35	phrog_116	265.0	0	DNA methyltransferase	other
UniRef90	UHGV-1456804_35	UniRef90_D4S859	719.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1456804_35	585503.HMPREF7545_1724	719.0	0	Cytosine-specific methyltransferase	N/A
PADLOC	UHGV-1456804_35	oMTase_00004	249.9	0	orphan methyltransferase	RM
Pfam	UHGV-1456804_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1456804_35	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1456804_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1456804_35	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
Pfam	UHGV-1456804_37	PF18789	N/A	N/A	Defence against restriction A C-terminal	DarA_C
structural_annotation	UHGV-1456804_37	PF18789	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_39	K00571	111.2	1.2e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1456804_39	phrog_67	104.3	2.8e-32	DNA methyltransferase	other
UniRef90	UHGV-1456804_39	UniRef90_UPI001F1B82E2	390.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1456804_39	1449342.JQMR01000001_gene1025	378.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-1456804_39	MTase_II_00157	88.1	5.3e-27	Type II methyltransferase	RM
Pfam	UHGV-1456804_39	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1456804_39	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1456804_39	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_40	K03111	130.4	2.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1456804_40	phrog_44	136.2	2.1e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456804_40	UniRef90_A0A1B3X2R0	188.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1456804_40	864563.HMPREF9166_1268	186.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1456804_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1456804_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1456804_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1456804_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1456804_40	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_41	phrog_36	60.6	3.1e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1456804_41	864563.HMPREF9166_0579	183.0	0	N/A	N/A
structural_annotation	UHGV-1456804_41	PF08281,NF008895,COG1595	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1456804_42	1009370.ALO_12391	73.9	0.00000000000000446	N/A	N/A
structural_annotation	UHGV-1456804_42	PF10263	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_43	K07319	180.8	0	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1456804_43	phrog_67	184.1	0	DNA methyltransferase	other
UniRef90	UHGV-1456804_43	UniRef90_UPI00055C7461	350.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1456804_43	675815.VOA_001643	143.0	4.82e-37	DNA methylase	N/A
PADLOC	UHGV-1456804_43	MTase_II_00051	155.1	1.4013e-45	Type II methyltransferase	RM
Pfam	UHGV-1456804_43	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1456804_43	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-1456804_43	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_44	K07474	75.4	1.6e-21	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1456804_44	phrog_51	74.9	5e-22	terminase small subunit	head and packaging
UniRef90	UHGV-1456804_44	UniRef90_D4S865	204.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1456804_44	585503.HMPREF7545_1730	204.0	0	Terminase small subunit	N/A
Pfam	UHGV-1456804_44	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1456804_44	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1456804_44	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1456804_45	K06909	77.0	2.8e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1456804_45	phrog_2	169.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1456804_45	UniRef90_UPI001D00EC11	514.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1456804_45	585503.HMPREF7545_1731	702.0	0	Terminase-like family	N/A
Pfam	UHGV-1456804_45	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1456804_45	COG5323	N/A	N/A	Phage large terminase packaging protein	N/A
structural_annotation	UHGV-1456804_45	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_46	phrog_1216	282.0	0	portal protein	head and packaging
UniRef90	UHGV-1456804_46	UniRef90_A0A0U1L376	533.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1456804_46	1485543.JMME01000020_gene791	790.0	0	Membrane	N/A
COG	UHGV-1456804_46	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1456804_46	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1456804_48	1485543.JMME01000020_gene789	141.0	9.99e-36	N/A	N/A
PHROG	UHGV-1456804_49	phrog_1328	159.2	0	major head protein	head and packaging
UniRef90	UHGV-1456804_49	UniRef90_UPI0004838F8E	413.0	0	N/A	N/A
eggNOG-mapper	UHGV-1456804_49	1485543.JMME01000020_gene788	413.0	0	N/A	N/A
Pfam	UHGV-1456804_49	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-1456804_49	PF17236,MF_04133,NF033394,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1456804_51	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1456804_52	1485543.JMME01000020_gene785	94.0	3.07e-22	N/A	N/A
structural_annotation	UHGV-1456804_52	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1456804_53	PF05899,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1456804_54	1123288.SOV_4c02720	134.0	1.47e-31	N/A	N/A
structural_annotation	UHGV-1456804_54	PF11134,MF_00923,NF000022,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-1456804_55	phrog_2631	120.8	7.4e-36	tail fiber protein	tail
UniRef90	UHGV-1456804_55	UniRef90_UPI0019599337	1518.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1456804_55	864563.HMPREF9166_0550	189.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1456804_55	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1456804_56	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1456804_57	1485543.JMME01000020_gene776	152.0	3.06e-38	N/A	N/A
PHROG	UHGV-1456804_59	phrog_5143	272.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1456804_59	679201.HMPREF9334_00654	420.0	0	N/A	N/A
Pfam	UHGV-1456804_59	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-1456804_59	PF18763	N/A	N/A	ddrB-like ParB superfamily domain	ddrB-ParB
Pfam	UHGV-1456804_59	PF04002	N/A	N/A	RadC-like JAB domain	RadC