UHGV-1456905 (vOTU-106600)

Viral Genome: UHGV-1456905

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1456905
vOTU ID	vOTU-106600
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0284811
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.85 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.11
Jumbo phage	No

Genome content
Genome length (bp)	43,138
GC content	37.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	84
CDS density	89%
Average CDS length (bps)	458.54
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1456905_3	phrog_15428	53.0	0.0000000000000045	N/A	unknown function
UniRef90	UHGV-1456905_3	UniRef90_A0A1V9K938	78.6	0.00000000000000694	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1456905_3	1410634.JHVD01000003_gene1934	120.0	2.96e-29	G5	N/A
Pfam	UHGV-1456905_3	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1456905_3	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
KOfam	UHGV-1456905_5	K14680	163.9	0	E6.5.1.3; RNA ligase [EC:6.5.1.3]	N/A
PHROG	UHGV-1456905_5	phrog_562	125.3	4.4e-37	RNA ligase and tail fiber protein attachment catalyst	tail
UniRef90	UHGV-1456905_5	UniRef90_UPI001F3063A5	154.0	2.16e-40	T4 RnlA family RNA ligase	N/A
eggNOG-mapper	UHGV-1456905_5	234621.RER_24960	148.0	1.04e-38	RNA ligase	N/A
Pfam	UHGV-1456905_5	PF09511	N/A	N/A	RNA ligase	RNA_lig_T4_1
structural_annotation	UHGV-1456905_5	PF09511,MF_04149,TIGR02308,COG5324	N/A	N/A	N/A	N/A
PHROG	UHGV-1456905_9	phrog_98	102.0	4.4e-30	N/A	unknown function
UniRef90	UHGV-1456905_9	UniRef90_A0A095WFF3	83.6	3.01e-18	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1456905_9	864563.HMPREF9166_1270	82.0	3.71e-18	YopX protein	N/A
Pfam	UHGV-1456905_9	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1456905_9	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1456905_9	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1456905_10	PF16857	N/A	N/A	N/A	N/A
PHROG	UHGV-1456905_12	phrog_6035	52.7	0.0000000000000088	N/A	unknown function
PHROG	UHGV-1456905_22	phrog_434	62.3	8e-18	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456905_22	UniRef90_A0A833PDH8	87.8	3.74e-18	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1456905_22	292414.TM1040_0783	78.6	0.00000000000000199	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1456905_22	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
PHROG	UHGV-1456905_23	phrog_37405	121.4	7.8e-36	N/A	unknown function
UniRef90	UHGV-1456905_23	UniRef90_A0A6J5STW3	109.0	2.12e-26	DNA repair protein Rad52/59/22	N/A
eggNOG-mapper	UHGV-1456905_23	1121405.dsmv_3663	63.5	0.00000000136	double-strand break repair via single-strand annealing	N/A
Pfam	UHGV-1456905_23	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1456905_23	COG5055	N/A	N/A	Recombinational DNA repair protein (RAD52 pathway)	N/A
COG	UHGV-1456905_24	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1456905_25	phrog_428	58.9	1.2e-16	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1456905_25	411469.EUBHAL_00407	66.6	0.000000000706	N/A	N/A
COG	UHGV-1456905_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1456905_28	phrog_17775	102.1	5.2e-30	N/A	unknown function
UniRef90	UHGV-1456905_28	UniRef90_A0A6J5NSB1	92.8	1.69e-22	N/A	N/A
eggNOG-mapper	UHGV-1456905_28	1217705.F900_00002	95.1	3.11e-24	N/A	N/A
Pfam	UHGV-1456905_28	PF19905	N/A	N/A	N/A	DUF6378
KOfam	UHGV-1456905_29	K01160	44.3	0.0000000000046	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1456905_29	phrog_34	50.0	0.000000000000057	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
COG	UHGV-1456905_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1456905_29	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1456905_30	K02342	45.4	0.00000000000064	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1456905_30	phrog_403	172.9	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456905_30	UniRef90_A0A7C5Q220	105.0	6.07e-20	Ribonucleoside-diphosphate reductase	N/A
eggNOG-mapper	UHGV-1456905_30	1481186.A0A075DX35_9CAUD	122.0	6.28e-28	nucleic acid binding	N/A
Pfam	UHGV-1456905_30	PF13482	N/A	N/A	RNase_H superfamily	RNase_H_2
NCBIFam	UHGV-1456905_30	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
PHROG	UHGV-1456905_33	phrog_505	272.6	0	polynucleotide kinase	other
UniRef90	UHGV-1456905_33	UniRef90_K9UJQ0	209.0	0	Putative kinase	N/A
eggNOG-mapper	UHGV-1456905_33	1173020.Cha6605_4366	209.0	0	AAA domain	N/A
Pfam	UHGV-1456905_33	PF13671	N/A	N/A	AAA domain	AAA_33
COG	UHGV-1456905_33	COG4639	N/A	N/A	Predicted kinase	N/A
structural_annotation	UHGV-1456905_33	PF13671,PF08235,MF_00235,TIGR03574,COG4639,COG4850	N/A	N/A	N/A	N/A
KOfam	UHGV-1456905_38	K03111	109.3	5.9e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1456905_38	phrog_44	111.6	8e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456905_38	UniRef90_A0A0G1V5K9	119.0	3.96e-32	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1456905_38	1321774.HMPREF9108_02352	100.0	1.68e-25	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1456905_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1456905_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1456905_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1456905_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1456905_38	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1456905_39	K10026	182.9	0	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	N/A
PHROG	UHGV-1456905_39	phrog_2076	173.5	0	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1456905_39	UniRef90_A0A2N0KVF3	216.0	0	7-carboxy-7-deazaguanine synthase	N/A
eggNOG-mapper	UHGV-1456905_39	1545915.JROG01000004_gene1882	198.0	0	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	N/A
Pfam	UHGV-1456905_39	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-1456905_39	COG0602	N/A	N/A	Organic radical activating enzyme NrdG/QueE	N/A
HAMAP	UHGV-1456905_39	MF_00917	N/A	N/A	7-carboxy-7-deazaguanine synthase [queE]	N/A
structural_annotation	UHGV-1456905_39	PF04055,MF_00917,TIGR03365,COG0602	N/A	N/A	N/A	N/A
KOfam	UHGV-1456905_40	K01737	100.8	1.4e-29	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]	N/A
PHROG	UHGV-1456905_40	phrog_2389	136.4	1.10001e-40	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1456905_40	UniRef90_A0A6M1NX75	159.0	0	6-carboxy-5,6,7,8-tetrahydropterin synthase	N/A
eggNOG-mapper	UHGV-1456905_40	864069.MicloDRAFT_00070210	150.0	1.54143e-44	Catalyzes the conversion of 7,8-dihydroneopterin triphosphate (H2NTP) to 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) and acetaldehyde	N/A
Pfam	UHGV-1456905_40	PF01242	N/A	N/A	6-pyruvoyl tetrahydropterin synthase	PTPS
COG	UHGV-1456905_40	COG0720	N/A	N/A	6-pyruvoyl-tetrahydropterin synthase	N/A
structural_annotation	UHGV-1456905_40	PF01242,TIGR00039,COG0720	N/A	N/A	N/A	N/A
KOfam	UHGV-1456905_41	K01495	189.7	0	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	N/A
PHROG	UHGV-1456905_41	phrog_2197	187.1	0	GTP cyclohydrolase	other
UniRef90	UHGV-1456905_41	UniRef90_A0A6J5MZC7	159.0	4.2039e-45	GTP cyclohydrolase I	N/A
eggNOG-mapper	UHGV-1456905_41	459495.SPLC1_S541290	137.0	7.83e-38	GTP cyclohydrolase I	N/A
Pfam	UHGV-1456905_41	PF01227	N/A	N/A	GTP cyclohydrolase I	GTP_cyclohydroI
COG	UHGV-1456905_41	COG0302	N/A	N/A	GTP cyclohydrolase I	N/A
structural_annotation	UHGV-1456905_41	PF01227,MF_00223,NF006826,COG0302	N/A	N/A	N/A	N/A
PHROG	UHGV-1456905_43	phrog_1238	75.3	7.5e-22	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1456905_43	UniRef90_A0A833DPD6	70.1	0.000000000000431	Phosphoheptose isomerase	N/A
eggNOG-mapper	UHGV-1456905_43	746697.Aeqsu_2745	66.6	0.00000000000175	Phosphoheptose isomerase	N/A
COG	UHGV-1456905_43	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
KOfam	UHGV-1456905_44	K06920	128.7	5e-38	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	N/A
PHROG	UHGV-1456905_44	phrog_1550	87.0	2e-25	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1456905_44	UniRef90_A0A6J7X982	176.0	0	COG0603 Predicted PP-loop superfamily ATPase	N/A
eggNOG-mapper	UHGV-1456905_44	222534.KB893754_gene4075	95.9	7.29e-21	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	N/A
PADLOC	UHGV-1456905_44	QueC_00001	66.4	9.9e-19	QueC	CBASS
Pfam	UHGV-1456905_44	PF06508	N/A	N/A	Queuosine biosynthesis protein QueC	QueC
COG	UHGV-1456905_44	COG0603	N/A	N/A	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	N/A
PHROG	UHGV-1456905_45	phrog_887	126.3	2.6e-37	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1456905_45	UniRef90_A0A0G0FDX2	70.9	0.000000000193	BcepGomrgp31	N/A
eggNOG-mapper	UHGV-1456905_45	1538804.A0A088F6Q5_9CAUD	60.1	0.000000129	tRNA modification	N/A
structural_annotation	UHGV-1456905_45	PF00290,MF_01634,TIGR00432,COG0343	N/A	N/A	N/A	N/A
KOfam	UHGV-1456905_46	K03497	58.1	2.6e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1456905_46	phrog_723	81.3	9e-24	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456905_46	UniRef90_A0A0J1HF15	71.2	0.0000000000206	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1456905_46	169963.lmo2790	63.5	0.00000000376	Belongs to the ParB family	N/A
Pfam	UHGV-1456905_46	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1456905_46	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1456905_46	PF02195,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1456905_47	1095770.CAHE01000088_gene1822	71.2	0.000000000000029	N/A	N/A
PHROG	UHGV-1456905_51	phrog_28096	43.7	0.0000000000032	N/A	unknown function
structural_annotation	UHGV-1456905_58	PF10922	N/A	N/A	N/A	N/A
PHROG	UHGV-1456905_62	phrog_98	78.4	7.8e-23	N/A	unknown function
UniRef90	UHGV-1456905_62	UniRef90_A0A6G5YI97	75.9	0.00000000000000566	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1456905_62	1567011.A0A0A7RWK2_9VIRU	65.1	0.0000000000136	YopX protein	N/A
Pfam	UHGV-1456905_62	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1456905_62	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1456905_62	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1456905_66	phrog_229	115.2	5.5e-34	MazG-like pyrophosphatase	other
UniRef90	UHGV-1456905_66	UniRef90_A0A7X0NWE7	129.0	4.29e-36	NTP pyrophosphatase (Non-canonical NTP hydrolase)	N/A
eggNOG-mapper	UHGV-1456905_66	1463821.JOGR01000004_gene2577	126.0	2.94e-36	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1456905_66	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1456905_66	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1456905_66	PF12643,MF_01020,NF002747,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-1456905_71	phrog_979	74.2	7.9e-22	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-1456905_71	525257.HMPREF0204_11375	139.0	4.28e-32	Terminase-like family	N/A
Pfam	UHGV-1456905_71	PF14528	N/A	N/A	LAGLIDADG-like domain	LAGLIDADG_3
eggNOG-mapper	UHGV-1456905_73	675635.Psed_1244	51.6	0.00000586	N/A	N/A
PHROG	UHGV-1456905_77	phrog_5034	82.7	4.5e-24	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1456905_77	UniRef90_UPI001B8B0237	102.0	1.65e-24	recombination protein NinG	N/A
eggNOG-mapper	UHGV-1456905_77	762982.HMPREF9442_00543	89.0	3.32e-20	N/A	N/A
Pfam	UHGV-1456905_77	PF05766	N/A	N/A	Bacteriophage Lambda NinG protein	NinG
COG	UHGV-1456905_77	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1456905_77	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-1456905_84	phrog_755	51.6	0.0000000000000071	RNA ligase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1456905_84	1429046.RR21198_3990	65.1	0.0000000948	Portal protein	N/A
Pfam	UHGV-1456905_84	PF04860	N/A	N/A	Phage portal protein	Phage_portal
Pfam	UHGV-1456905_84	PF13563	N/A	N/A	2'-5' RNA ligase superfamily	2_5_RNA_ligase2
COG	UHGV-1456905_84	COG4695	N/A	N/A	Phage portal protein BeeE	N/A