UHGV-1458054 (vOTU-121595)

Viral Genome: UHGV-1458054

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1458054
vOTU ID	vOTU-121595
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0304168
Associated BioSample	SAMEA4545332
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.57 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.53
Jumbo phage	No

Genome content
Genome length (bp)	47,917
GC content	57.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	90%
Average CDS length (bps)	655.05
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.57)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1458054_2	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_5	phrog_59	128.7	2.2e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458054_5	UniRef90_A0A139QI12	125.0	2.49e-33	HNH homing endonuclease	N/A
eggNOG-mapper	UHGV-1458054_5	767806.D7PQ37_9CAUD	118.0	3.81e-31	HNH endonuclease	N/A
PADLOC	UHGV-1458054_5	HEase_00016	132.2	3.4e-39	homing endonuclease	RM
Pfam	UHGV-1458054_5	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1458054_5	PF13392	N/A	N/A	HNH endonuclease	HNH_3
KOfam	UHGV-1458054_6	K17398	48.9	2.6e-25	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-1458054_6	phrog_116	46.5	1.2e-23	DNA methyltransferase	other
UniRef90	UHGV-1458054_6	UniRef90_A0A1Q6RQI3	361.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1458054_6	1235797.C816_01614	264.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
Pfam	UHGV-1458054_6	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1458054_6	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1458054_6	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1458054_7	UniRef90_A0A1I3J1T2	110.0	2.28e-28	N/A	N/A
Pfam	UHGV-1458054_7	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1458054_8	PF06657	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_9	phrog_38832	81.4	1.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1458054_9	665956.HMPREF1032_00143	83.6	5.62e-18	N/A	N/A
PHROG	UHGV-1458054_10	phrog_3136	137.8	2.89999e-41	N/A	unknown function
UniRef90	UHGV-1458054_10	UniRef90_A0A3D0HBD2	144.0	9.32999e-41	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1458054_10	642492.Clole_1416	55.8	0.000000116	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1458054_10	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1458054_10	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_14	phrog_22543	46.2	0.00000000000074	N/A	unknown function
structural_annotation	UHGV-1458054_18	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-1458054_20	K22299	44.7	0.0000000000028	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1458054_20	phrog_8	52.4	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1458054_20	UniRef90_UPI00195A6681	63.9	0.00000000000871	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1458054_20	1121085.AUCI01000010_gene502	61.2	0.0000000000557	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1458054_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1458054_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1458054_20	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_22	phrog_2	43.1	0.0000000000066	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-1458054_22	881953.E0YJ34_9CAUD	120.0	1.03e-25	N/A	N/A
structural_annotation	UHGV-1458054_22	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_24	phrog_2739	50.5	1.9e-26	portal protein	head and packaging
structural_annotation	UHGV-1458054_24	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_25	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_26	phrog_3313	46.1	0.000000000000034	N/A	unknown function
eggNOG-mapper	UHGV-1458054_26	1151292.QEW_0632	56.6	0.0000094	N/A	N/A
structural_annotation	UHGV-1458054_26	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_28	phrog_4088	56.8	2e-16	N/A	unknown function
structural_annotation	UHGV-1458054_28	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_30	phrog_1129	74.3	1e-21	holin	lysis
UniRef90	UHGV-1458054_30	UniRef90_A0A1Q6RI18	126.0	2.79e-36	Enolase	N/A
eggNOG-mapper	UHGV-1458054_30	1226322.HMPREF1545_00069	116.0	6.65e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1458054_30	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1458054_30	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_32	phrog_18955	63.2	2.4e-18	N/A	unknown function
UniRef90	UHGV-1458054_32	UniRef90_UPI00164D2830	444.0	0	phosphodiester glycosidase family protein	N/A
eggNOG-mapper	UHGV-1458054_32	1536772.R70723_09625	55.8	0.00000246	Exopolysaccharide biosynthesis protein	N/A
Pfam	UHGV-1458054_32	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-1458054_32	COG4632	N/A	N/A	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	N/A
structural_annotation	UHGV-1458054_32	PF09992,COG4632	N/A	N/A	N/A	N/A
KOfam	UHGV-1458054_33	K08640	101.9	1e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1458054_33	phrog_894	107.4	1.4e-31	endolysin	lysis
UniRef90	UHGV-1458054_33	UniRef90_K1TJK4	230.0	0	Peptidase_M15_3 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1458054_33	1235797.C816_04171	219.0	0	Peptidase M15	N/A
Pfam	UHGV-1458054_33	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1458054_33	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_33	PF05951,COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_34	TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_35	phrog_16444	57.7	7e-17	N/A	unknown function
UniRef90	UHGV-1458054_35	UniRef90_A0A3M8AU08	65.5	0.000000061	Ig-like domain-containing protein	N/A
Pfam	UHGV-1458054_35	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1458054_35	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_35	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_38	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_39	phrog_937	60.2	3.9e-17	hemolysin	other
UniRef90	UHGV-1458054_39	UniRef90_R5GGW2	52.8	0.000000912	Phosphoglucosamine mutase	N/A
eggNOG-mapper	UHGV-1458054_39	693746.OBV_19000	65.5	0.00000000000142	N/A	N/A
structural_annotation	UHGV-1458054_41	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-1458054_43	K20478	71.2	1.7e-21	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1458054_43	phrog_4211	245.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1458054_43	UniRef90_A0A2V2CTR2	376.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1458054_43	397287.C807_01576	188.0	5.60519e-45	Phage-related minor tail protein	N/A
Pfam	UHGV-1458054_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1458054_43	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1458054_43	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1458054_43	PF10145,TIGR01760	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_44	PF19266,PF02010,MF_04116,NF032891,TIGR01633,COG3499,COG3506,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_45	phrog_1887	185.2	0	tail protein	tail
structural_annotation	UHGV-1458054_45	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_47	phrog_10993	176.8	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1458054_47	UniRef90_K1UI43	304.0	0	N/A	N/A
eggNOG-mapper	UHGV-1458054_47	1121334.KB911071_gene1970	202.0	0	N/A	N/A
Pfam	UHGV-1458054_47	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1458054_47	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_48	PF20328,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_49	phrog_10993	174.5	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1458054_49	UniRef90_K1UI43	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-1458054_49	1203606.HMPREF1526_01356	164.0	2.38221e-44	cell wall binding repeat	N/A
Pfam	UHGV-1458054_49	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1458054_49	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
structural_annotation	UHGV-1458054_49	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_50	phrog_18593	79.0	5.7e-23	N/A	unknown function
UniRef90	UHGV-1458054_50	UniRef90_A0A2V2GFC0	238.0	0	Chitinase	N/A
eggNOG-mapper	UHGV-1458054_50	552398.HMPREF0866_03095	230.0	0	N/A	N/A
Pfam	UHGV-1458054_50	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
KOfam	UHGV-1458054_51	K04763	154.3	1.4013e-45	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1458054_51	phrog_1	138.5	4.69996e-41	integrase	integration and excision
UniRef90	UHGV-1458054_51	UniRef90_A0A7W0WD13	80.5	0.000000000000134	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1458054_51	1485544.JQKP01000007_gene2001	76.6	0.000000000000601	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1458054_51	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1458054_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1458054_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1458054_51	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_53	phrog_373	154.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-1458054_53	UniRef90_UPI001AE8BC5E	176.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1458054_53	1405498.SSIM_07590	159.0	7.00649e-45	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1458054_53	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1458054_53	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1458054_53	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1458054_53	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-1458054_54	UniRef90_A0A316NA64	79.3	1.93e-18	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1458054_54	478749.BRYFOR_07643	68.6	0.00000000000000637	N/A	N/A
Pfam	UHGV-1458054_54	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1458054_54	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_55	phrog_13160	50.8	1.8e-17	N/A	unknown function
UniRef90	UHGV-1458054_55	UniRef90_UPI000741C56B	74.3	0.000000000000583	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1458054_55	2754.EH55_11420	59.7	0.0000000415	N/A	N/A
structural_annotation	UHGV-1458054_55	PF07430,COG4994	N/A	N/A	N/A	N/A
KOfam	UHGV-1458054_56	K04487	258.9	0	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	N/A
PHROG	UHGV-1458054_56	phrog_12787	176.6	0	N/A	unknown function
UniRef90	UHGV-1458054_56	UniRef90_R6X5V3	216.0	0	Cysteine desulfurase	N/A
eggNOG-mapper	UHGV-1458054_56	742738.HMPREF9460_00418	202.0	0	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	N/A
PADLOC	UHGV-1458054_56	SspA_00001	195.3	0	SspA	SSP
Pfam	UHGV-1458054_56	PF00266	N/A	N/A	Aminotransferase class-V	Aminotran_5
COG	UHGV-1458054_56	COG1104	N/A	N/A	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	N/A
structural_annotation	UHGV-1458054_56	PF00266,MF_00331,TIGR03403,COG1104	N/A	N/A	N/A	N/A
UniRef90	UHGV-1458054_57	UniRef90_A0A2K4ZGW5	62.0	0.0000000000141	Ribbon-helix-helix protein, copG family	N/A
eggNOG-mapper	UHGV-1458054_57	397287.C807_01320	62.0	0.00000000000446	N/A	N/A
structural_annotation	UHGV-1458054_57	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1458054_58	phrog_13160	49.3	1.5e-16	N/A	unknown function
UniRef90	UHGV-1458054_58	UniRef90_A0A073J0T2	70.5	0.0000000000212	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1458054_58	2754.EH55_11420	70.5	0.00000000000355	N/A	N/A
structural_annotation	UHGV-1458054_58	PF07430,COG4994	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_59	PF16450,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_60	PF16857,MF_00273,NF001981	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_61	TIGR04412	N/A	N/A	N/A	N/A
KOfam	UHGV-1458054_62	K03530	102.2	6.4e-30	hupB; DNA-binding protein HU-beta	N/A
PHROG	UHGV-1458054_62	phrog_379	93.1	1.5e-27	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458054_62	UniRef90_A0A7X8FDZ0	94.4	3.04e-23	HU family DNA-binding protein	N/A
eggNOG-mapper	UHGV-1458054_62	1274524.BSONL12_21299	91.7	5.43e-23	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	N/A
Pfam	UHGV-1458054_62	PF00216	N/A	N/A	Bacterial DNA-binding protein	Bac_DNA_binding
COG	UHGV-1458054_62	COG0776	N/A	N/A	Bacterial nucleoid DNA-binding protein IHF-alpha	N/A
structural_annotation	UHGV-1458054_62	PF00216,MF_00381,NF007945,COG0776	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_63	PF10979	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458054_64	TIGR00663,COG0592	N/A	N/A	N/A	N/A