UHGV-1458580 (vOTU-035397)

Viral Genome: UHGV-1458580

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1458580
vOTU ID	vOTU-035397
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0315206
Associated BioSample	SAMN05414996
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9764
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.72
Jumbo phage	No

Genome content
Genome length (bp)	51,992
GC content	56.59%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	89%
Average CDS length (bps)	672.04
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1458580_1	K00390	100.9	1.3e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1458580_1	phrog_424	114.9	5.6e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1458580_1	UniRef90_UPI001D087498	444.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1458580_1	1408437.JNJN01000032_gene2312	308.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1458580_1	BrxP_00001	66.8	2.3e-20	BrxP	BREX
Pfam	UHGV-1458580_1	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1458580_1	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1458580_1	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_4	phrog_3136	129.7	8.9e-39	N/A	unknown function
UniRef90	UHGV-1458580_4	UniRef90_UPI001CBCD733	132.0	9.27e-36	ASCH domain-containing protein	N/A
COG	UHGV-1458580_4	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1458580_4	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_13	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-1458580_15	K22299	45.8	0.0000000000012	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1458580_15	phrog_8	52.9	0.0000000000000075	transcriptional regulator	transcription regulation
UniRef90	UHGV-1458580_15	UniRef90_UPI00195A6681	64.3	0.00000000000548	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1458580_15	1121085.AUCI01000010_gene502	63.5	0.00000000000623	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1458580_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1458580_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1458580_15	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_17	phrog_15503	47.2	0.00000000000022	N/A	unknown function
eggNOG-mapper	UHGV-1458580_17	1308863.U5J9B2_9CAUD	118.0	4.38e-25	N/A	N/A
structural_annotation	UHGV-1458580_17	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_19	phrog_2739	50.9	3.7e-27	portal protein	head and packaging
structural_annotation	UHGV-1458580_19	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_20	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_21	phrog_3313	51.2	0.0000000000000026	N/A	unknown function
eggNOG-mapper	UHGV-1458580_21	1151292.QEW_0632	60.5	0.000000561	N/A	N/A
structural_annotation	UHGV-1458580_21	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_23	phrog_4088	62.9	3.7e-18	N/A	unknown function
structural_annotation	UHGV-1458580_23	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_25	phrog_1129	74.3	9.8e-22	holin	lysis
UniRef90	UHGV-1458580_25	UniRef90_A0A1Q6RI18	126.0	2.79e-36	Enolase	N/A
eggNOG-mapper	UHGV-1458580_25	1226322.HMPREF1545_00069	116.0	6.65e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1458580_25	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1458580_25	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1458580_27	K08640	97.4	2.2e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1458580_27	phrog_18955	104.4	5.5e-31	N/A	unknown function
UniRef90	UHGV-1458580_27	UniRef90_UPI001C1061EB	326.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-1458580_27	1235797.C816_04171	318.0	0	Peptidase M15	N/A
Pfam	UHGV-1458580_27	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1458580_27	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1458580_27	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_27	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_28	TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_29	phrog_16444	68.6	4.1e-20	N/A	unknown function
UniRef90	UHGV-1458580_29	UniRef90_UPI001490BC3E	69.7	0.00000000258	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1458580_29	387093.SUN_0956	57.0	0.00000948	Bacterial Ig-like domain 2	N/A
Pfam	UHGV-1458580_29	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1458580_29	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_29	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_32	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_33	phrog_937	60.2	3.5e-17	hemolysin	other
UniRef90	UHGV-1458580_33	UniRef90_R5GGW2	56.2	0.000000041	Phosphoglucosamine mutase	N/A
eggNOG-mapper	UHGV-1458580_33	693746.OBV_19000	64.3	0.00000000000404	N/A	N/A
structural_annotation	UHGV-1458580_35	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-1458580_37	K10421	45.4	1e-24	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1458580_37	phrog_4211	244.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1458580_37	UniRef90_A0A2V2CTR2	376.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1458580_37	397287.C807_01576	187.0	1.12104e-44	Phage-related minor tail protein	N/A
Pfam	UHGV-1458580_37	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1458580_37	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1458580_37	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1458580_37	PF10145,TIGR01760	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_38	PF19266,PF02010,MF_04116,NF032891,TIGR01633,COG3499,COG3506,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_39	phrog_1887	179.8	0	tail protein	tail
structural_annotation	UHGV-1458580_39	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1458580_40	1226322.HMPREF1545_00064	75.5	0.000000000000681	N/A	N/A
PHROG	UHGV-1458580_41	phrog_4577	42.7	0.0000000000021	tail protein	tail
UniRef90	UHGV-1458580_41	UniRef90_B0PAH8	65.5	0.0000000065	N/A	N/A
eggNOG-mapper	UHGV-1458580_41	1304866.K413DRAFT_4771	80.5	0.0000000000000418	N/A	N/A
KOfam	UHGV-1458580_43	K14060	157.6	0	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1458580_43	phrog_125	154.1	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458580_43	UniRef90_A0A316L4A2	283.0	0	Invertase	N/A
eggNOG-mapper	UHGV-1458580_43	1297617.JPJD01000014_gene876	278.0	0	resolvase	N/A
Pfam	UHGV-1458580_43	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
NCBIFam	UHGV-1458580_43	NF009949.0	N/A	N/A	master DNA invertase Mpi family serine-type recombinase	N/A
COG	UHGV-1458580_43	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1458580_43	PF00239,PF13384,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1458580_44	K04763	152.7	2.8026e-45	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1458580_44	phrog_1	134.9	5.5e-40	integrase	integration and excision
UniRef90	UHGV-1458580_44	UniRef90_A0A7W0WD13	79.7	0.000000000000249	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1458580_44	1485544.JQKP01000007_gene2001	75.1	0.00000000000204	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1458580_44	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1458580_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1458580_44	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1458580_44	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_46	phrog_4608	160.1	0	anti-repressor	transcription regulation
UniRef90	UHGV-1458580_46	UniRef90_A0A373NRG3	206.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-1458580_46	926561.KB900622_gene670	157.0	4.34403e-44	ORF6N domain	N/A
Pfam	UHGV-1458580_46	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-1458580_46	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1458580_46	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-1458580_47	UniRef90_A0A316NA64	79.7	1.36e-18	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1458580_47	478749.BRYFOR_07643	68.9	0.00000000000000449	N/A	N/A
Pfam	UHGV-1458580_47	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1458580_47	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1458580_48	K21525	41.2	0.000000000012	Gp3; endonuclease I [EC:3.1.21.2]	N/A
PHROG	UHGV-1458580_48	phrog_945	59.4	2.5e-17	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458580_48	UniRef90_A0A847QWT0	201.0	0	HIRAN domain-containing protein	N/A
eggNOG-mapper	UHGV-1458580_48	444876.E3SQL5_9CAUD	63.9	0.00000000104	deoxyribonuclease IV (phage-T4-induced) activity	N/A
Pfam	UHGV-1458580_48	PF08797	N/A	N/A	HIRAN domain	HIRAN
KOfam	UHGV-1458580_49	K04487	333.8	0	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	N/A
PHROG	UHGV-1458580_49	phrog_12787	182.2	0	N/A	unknown function
UniRef90	UHGV-1458580_49	UniRef90_A0A369LM39	228.0	0	Cysteine desulfurase	N/A
eggNOG-mapper	UHGV-1458580_49	649764.HMPREF0762_02011	215.0	0	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	N/A
PADLOC	UHGV-1458580_49	SspA_00001	188.5	0	SspA	SSP
Pfam	UHGV-1458580_49	PF00266	N/A	N/A	Aminotransferase class-V	Aminotran_5
COG	UHGV-1458580_49	COG1104	N/A	N/A	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	N/A
structural_annotation	UHGV-1458580_49	PF00266,MF_00331,TIGR03403,COG1104	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_50	phrog_374	199.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1458580_50	632245.CLP_1610	193.0	0	N/A	N/A
structural_annotation	UHGV-1458580_50	PF18337	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_51	PF16450,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_52	PF16857,MF_00273,NF001981	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_53	TIGR04412	N/A	N/A	N/A	N/A
KOfam	UHGV-1458580_54	K03530	103.1	3.5e-30	hupB; DNA-binding protein HU-beta	N/A
PHROG	UHGV-1458580_54	phrog_379	96.4	1.4e-28	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458580_54	UniRef90_A0A8I1NRM9	97.1	1.84e-24	DNA-binding protein HupB	N/A
eggNOG-mapper	UHGV-1458580_54	224308.BSU21050	92.4	2.12e-23	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	N/A
Pfam	UHGV-1458580_54	PF00216	N/A	N/A	Bacterial DNA-binding protein	Bac_DNA_binding
COG	UHGV-1458580_54	COG0776	N/A	N/A	Bacterial nucleoid DNA-binding protein IHF-alpha	N/A
structural_annotation	UHGV-1458580_54	PF00216,MF_00381,NF007945,COG0776	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_56	NF040540	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_57	PF10979	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_58	TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-1458580_59	phrog_19458	372.5	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1458580_59	UniRef90_UPI0010565CFE	222.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1458580_59	748224.HMPREF9436_03092	301.0	0	N/A	N/A
COG	UHGV-1458580_59	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
eggNOG-mapper	UHGV-1458580_60	1236976.JCM16418_5054	82.0	1.88e-16	N/A	N/A
UniRef90	UHGV-1458580_63	UniRef90_A0A174ECN7	112.0	2.65e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1458580_63	767817.Desgi_2502	99.4	9.7e-27	Cro/C1-type HTH DNA-binding domain	N/A
structural_annotation	UHGV-1458580_63	PF13560,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1458580_64	PF19891,NF010432	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1458580_65	1484479.DI14_04650	52.0	0.0000000943	N/A	N/A
PHROG	UHGV-1458580_68	phrog_3543	54.9	0.0000000000000013	N/A	unknown function
UniRef90	UHGV-1458580_68	UniRef90_UPI001EF82D45	95.5	1.15e-22	N/A	N/A
eggNOG-mapper	UHGV-1458580_68	1196031.ALEG01000041_gene2681	90.9	3.41e-22	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein	N/A
COG	UHGV-1458580_68	COG0664	N/A	N/A	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases	N/A
structural_annotation	UHGV-1458580_68	PF12098,MF_01160,NF041095,COG1993	N/A	N/A	N/A	N/A