UHGV-1459260 (vOTU-100851)

Viral Genome: UHGV-1459260

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1459260
vOTU ID	vOTU-100851
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0174486
Associated BioSample	SAMEA2737965
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.21 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9822
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.42
Jumbo phage	No

Genome content
Genome length (bp)	23,843
GC content	33.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	32
CDS density	97%
Average CDS length (bps)	724.03
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1459260_1	phrog_93	64.4	1.6e-18	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459260_1	UniRef90_A0A2X4N3Y7	171.0	0	VRR-NUC domain	N/A
eggNOG-mapper	UHGV-1459260_1	883081.HMPREF9698_01600	75.5	1.1e-16	VRR-NUC domain	N/A
structural_annotation	UHGV-1459260_1	PF01974,MF_01490,NF011269	N/A	N/A	N/A	N/A
KOfam	UHGV-1459260_2	K14440	127.7	3.1e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1459260_2	phrog_62	405.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459260_2	UniRef90_A0A2X4N6J8	896.0	0	DNA methylase	N/A
eggNOG-mapper	UHGV-1459260_2	1235799.C818_04202	606.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-1459260_2	ZorD1_00007	81.1	1.3e-23	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1459260_2	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1459260_2	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1459260_2	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1459260_2	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
UniRef90	UHGV-1459260_3	UniRef90_A0A2X4N3T8	118.0	6.82e-34	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-1459260_3	1336235.JAEG01000004_gene3864	46.6	0.00000453	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1459260_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1459260_3	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1459260_3	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_4	phrog_6380	194.5	0	DNA methyltransferase	other
UniRef90	UHGV-1459260_4	UniRef90_UPI0010CAC63C	347.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1459260_4	1282664.H354_07620	327.0	0	COG0286 Type I restriction-modification system methyltransferase subunit	N/A
Pfam	UHGV-1459260_4	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1459260_4	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1459260_4	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_6	phrog_2044	90.3	1.1e-26	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459260_6	UniRef90_A0A0H3ZW01	78.2	2.54e-17	Putative DNA-directed RNA polymerase, beta' subunit/160 kD subunit	N/A
eggNOG-mapper	UHGV-1459260_6	1636205.A0A0E3TAK6_9CAUD	84.0	1.99e-20	N/A	N/A
structural_annotation	UHGV-1459260_6	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_7	phrog_1891	135.8	2.29999e-40	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459260_7	UniRef90_A0A2X4N9Y4	233.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1459260_7	546275.FUSPEROL_02054	106.0	7.91e-27	HNH endonuclease	N/A
Pfam	UHGV-1459260_7	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1459260_7	PF13392	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1459260_8	PF10957	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_9	phrog_36	53.6	0.0000000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-1459260_9	UniRef90_A0A2X4N3V1	256.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1459260_9	PF08281,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1459260_10	K07474	99.0	9.5e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1459260_10	phrog_51	114.3	1e-33	terminase small subunit	head and packaging
UniRef90	UHGV-1459260_10	UniRef90_A0A2X4NG90	228.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1459260_10	562981.HMPREF0428_01825	192.0	0	Terminase small subunit	N/A
Pfam	UHGV-1459260_10	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1459260_10	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1459260_10	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1459260_11	K06909	259.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1459260_11	phrog_3717	150.6	9.80909e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1459260_11	UniRef90_A0A2X4NB78	847.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1459260_11	562981.HMPREF0428_00985	799.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-1459260_11	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1459260_11	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1459260_11	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1459260_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1459260_11	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_12	phrog_533	583.6	0	portal protein	head and packaging
UniRef90	UHGV-1459260_12	UniRef90_A0A2X4N9Z3	914.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1459260_12	562981.HMPREF0428_00984	862.0	0	portal protein	N/A
Pfam	UHGV-1459260_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1459260_12	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1459260_12	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_13	phrog_581	289.9	0	minor head protein	head and packaging
UniRef90	UHGV-1459260_13	UniRef90_A0A2X4N6F7	1079.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-1459260_13	562981.HMPREF0428_00983	608.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1459260_13	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1459260_13	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-1459260_13	PF06152,PF03496,NF040688	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1459260_14	562982.HMPREF0432_00874	102.0	1.58e-28	N/A	N/A
PHROG	UHGV-1459260_15	phrog_194	138.8	3.50002e-41	head scaffolding protein	head and packaging
UniRef90	UHGV-1459260_15	UniRef90_A0A2X4R123	345.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1459260_15	646413.C5IUJ4_9CAUD	179.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1459260_15	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1459260_15	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_16	phrog_840	430.1	0	major head protein	head and packaging
UniRef90	UHGV-1459260_16	UniRef90_A0A6H1F174	495.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1459260_16	562981.HMPREF0428_00981	495.0	0	N/A	N/A
structural_annotation	UHGV-1459260_16	PF03864,MF_04119,TIGR04387,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_18	phrog_541	99.4	2.6e-29	head-tail adaptor	connector
UniRef90	UHGV-1459260_18	UniRef90_A0A501VK26	139.0	3.84001e-40	N/A	N/A
eggNOG-mapper	UHGV-1459260_18	562981.HMPREF0428_00979	186.0	0	N/A	N/A
PHROG	UHGV-1459260_19	phrog_793	97.7	7.7e-29	head-tail adaptor	connector
UniRef90	UHGV-1459260_19	UniRef90_A0A2X4N3V8	213.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1459260_19	562981.HMPREF0428_00978	167.0	0	Minor capsid protein	N/A
Pfam	UHGV-1459260_19	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-1459260_19	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_20	phrog_556	67.8	1.6e-19	minor head protein	head and packaging
UniRef90	UHGV-1459260_20	UniRef90_A0A2X4NG99	235.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1459260_20	1246.JMEA01000006_gene45	114.0	2.01e-31	Minor capsid protein	N/A
Pfam	UHGV-1459260_20	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1459260_20	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_21	phrog_913	144.8	2.29813e-43	minor head protein	head and packaging
UniRef90	UHGV-1459260_21	UniRef90_A0A2X4NB85	254.0	0	Minor capsid protein from bacteriophage	N/A
eggNOG-mapper	UHGV-1459260_21	562981.HMPREF0428_00976	214.0	0	Minor capsid protein from bacteriophage	N/A
Pfam	UHGV-1459260_21	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1459260_21	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_22	phrog_820	165.0	0	major tail protein	tail
UniRef90	UHGV-1459260_22	UniRef90_A0A0X8KMB0	255.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1459260_22	562981.HMPREF0428_00975	237.0	0	N/A	N/A
structural_annotation	UHGV-1459260_22	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_23	phrog_1061	61.2	1.9e-17	N/A	unknown function
UniRef90	UHGV-1459260_23	UniRef90_A0A139RN56	89.0	1.8e-20	N/A	N/A
eggNOG-mapper	UHGV-1459260_23	562981.HMPREF0428_00974	134.0	6.04e-39	N/A	N/A
structural_annotation	UHGV-1459260_23	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_24	phrog_706	209.2	0	N/A	unknown function
UniRef90	UHGV-1459260_24	UniRef90_A0A2X4RDY7	383.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1459260_24	562981.HMPREF0428_00973	258.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1459260_24	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1459260_24	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_25	phrog_1204	531.2	0	tail protein	tail
UniRef90	UHGV-1459260_25	UniRef90_A0A2X4R133	1134.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1459260_25	562981.HMPREF0428_00972	792.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1459260_25	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-1459260_25	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
NCBIFam	UHGV-1459260_25	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1459260_25	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1459260_26	phrog_33	63.9	3.7e-18	distal tail protein Dit	tail
UniRef90	UHGV-1459260_26	UniRef90_A0A2X4NBW4	468.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1459260_26	562981.HMPREF0428_00971	429.0	0	phage tail	N/A
COG	UHGV-1459260_26	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1459260_26	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_27	phrog_2270	302.6	0	N/A	unknown function
UniRef90	UHGV-1459260_27	UniRef90_A0A2X4N412	1212.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1459260_27	562981.HMPREF0428_00970	658.0	0	Phage minor structural protein	N/A
NCBIFam	UHGV-1459260_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1459260_27	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1459260_27	PF14594,PF13620,TIGR01665,TIGR04183,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-1459260_28	K16628	50.1	0.0000000000000093	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1459260_28	phrog_6049	99.2	9.9e-35	tail fiber protein	tail
UniRef90	UHGV-1459260_28	UniRef90_A0A2X4N6M2	336.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-1459260_28	482234.SCAZ3_03785	88.6	7.54e-18	translation initiation factor activity	N/A
Pfam	UHGV-1459260_28	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
Pfam	UHGV-1459260_28	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1459260_28	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1459260_28	PF18454	N/A	N/A	N/A	N/A
PHROG	UHGV-1459260_30	phrog_7841	171.6	0	N/A	unknown function
UniRef90	UHGV-1459260_30	UniRef90_A0A2X4NGA9	863.0	0	Gp58-like protein	N/A
eggNOG-mapper	UHGV-1459260_30	1297534.CAUJ01000005_gene170	199.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1459260_30	PF07902	N/A	N/A	gp58-like protein	Gp58
Pfam	UHGV-1459260_30	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1459260_30	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1459260_30	PF13884	N/A	N/A	N/A	N/A