UHGV-1459903 (vOTU-087500)

Viral Genome: UHGV-1459903

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1459903
vOTU ID	vOTU-087500
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0175810
Associated BioSample	SAMEA2738124
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.21 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.16
Jumbo phage	No

Genome content
Genome length (bp)	24,038
GC content	37.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	96%
Average CDS length (bps)	607.03
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1459903_2	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_3	phrog_418	69.2	4.2e-20	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1459903_3	1401067.HMPREF0872_06765	172.0	0	N/A	N/A
structural_annotation	UHGV-1459903_3	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_4	phrog_308	75.3	8.6e-22	internal virion protein	head and packaging
UniRef90	UHGV-1459903_4	UniRef90_UPI001D08FF44	332.0	0	N/A	N/A
Pfam	UHGV-1459903_4	PF11090	N/A	N/A	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
structural_annotation	UHGV-1459903_4	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_5	phrog_376	643.8	0	tail protein	tail
UniRef90	UHGV-1459903_5	UniRef90_A0A3A4JUE0	326.0	0	E1_FCCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1459903_5	1401067.HMPREF0872_06775	648.0	0	N/A	N/A
structural_annotation	UHGV-1459903_5	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_6	phrog_394	167.4	0	tail protein	tail
eggNOG-mapper	UHGV-1459903_6	1401067.HMPREF0872_06780	212.0	0	N/A	N/A
structural_annotation	UHGV-1459903_6	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_8	phrog_427	41.9	0.000000000016	N/A	unknown function
structural_annotation	UHGV-1459903_8	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_9	phrog_212	165.7	0	major head protein	head and packaging
UniRef90	UHGV-1459903_9	UniRef90_A0A239Z8I8	602.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-1459903_9	1401067.HMPREF0872_06795	368.0	0	N/A	N/A
Pfam	UHGV-1459903_9	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1459903_9	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_10	phrog_458	92.2	7.5e-27	protease	other
eggNOG-mapper	UHGV-1459903_10	1401067.HMPREF0872_06800	120.0	2.96e-31	N/A	N/A
PHROG	UHGV-1459903_11	phrog_528	70.8	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1459903_11	568816.Acin_1833	62.0	0.00000000006	N/A	N/A
PHROG	UHGV-1459903_12	phrog_332	462.6	0	head-tail adaptor	connector
UniRef90	UHGV-1459903_12	UniRef90_UPI001D07F371	1088.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1459903_12	1401067.HMPREF0872_06810	594.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1459903_12	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1459903_12	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_14	phrog_5902	241.6	0	N/A	unknown function
UniRef90	UHGV-1459903_14	UniRef90_UPI0018A6EFE4	585.0	0	terminase	N/A
eggNOG-mapper	UHGV-1459903_14	1200557.JHWV01000001_gene277	595.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-1459903_14	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1459903_14	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1459903_15	K07474	126.3	4.2e-37	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1459903_15	phrog_51	132.5	2.1e-39	terminase small subunit	head and packaging
UniRef90	UHGV-1459903_15	UniRef90_UPI001D065029	209.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1459903_15	1280689.AUJC01000003_gene961	128.0	2.47e-36	Terminase small subunit	N/A
Pfam	UHGV-1459903_15	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1459903_15	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1459903_15	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_17	phrog_33034	42.6	0.0000000000065	N/A	unknown function
PHROG	UHGV-1459903_18	phrog_36	48.8	0.00000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-1459903_18	UniRef90_UPI0013DFE289	55.1	0.00000107	N/A	N/A
eggNOG-mapper	UHGV-1459903_18	706434.HMPREF9429_00383	58.9	0.00000000663	N/A	N/A
structural_annotation	UHGV-1459903_18	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_20	phrog_21026	73.4	2.9e-21	N/A	unknown function
KOfam	UHGV-1459903_23	K19232	126.5	1.4e-39	btaE; hyaluronate-binding autotransporter adhesin	N/A
UniRef90	UHGV-1459903_23	UniRef90_UPI001D068F5F	421.0	0	YadA-like family protein	N/A
eggNOG-mapper	UHGV-1459903_23	1128111.HMPREF0870_01786	173.0	0	Hep Hag repeat protein	N/A
Pfam	UHGV-1459903_23	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
Pfam	UHGV-1459903_23	PF05662	N/A	N/A	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
Pfam	UHGV-1459903_23	PF03895	N/A	N/A	YadA-like membrane anchor domain	YadA_anchor
COG	UHGV-1459903_23	COG5295	N/A	N/A	Autotransporter adhesin	N/A
structural_annotation	UHGV-1459903_23	PF03895,NF033478,COG5295	N/A	N/A	N/A	N/A
KOfam	UHGV-1459903_24	K01520	152.0	4.2039e-45	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1459903_24	phrog_135	140.3	8.39938e-42	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459903_24	UniRef90_UPI000AF5B6BD	273.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1459903_24	36080.S2JYN8	122.0	9.25e-34	dUTPase	N/A
Pfam	UHGV-1459903_24	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1459903_24	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1459903_24	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1459903_24	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1459903_25	PF13384,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_26	phrog_244	75.6	8.3e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459903_26	UniRef90_A0A841R0Q1	148.0	5.46506e-44	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1459903_26	1123250.KB908417_gene653	134.0	4.39e-39	N/A	N/A
structural_annotation	UHGV-1459903_26	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_27	phrog_2776	41.4	0.000000000017	N/A	unknown function
UniRef90	UHGV-1459903_27	UniRef90_A0A2S7ZCT0	156.0	0	DNA repair protein MmcB-related protein	N/A
structural_annotation	UHGV-1459903_27	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_28	phrog_1672	43.2	0.000000000005	N/A	unknown function
structural_annotation	UHGV-1459903_29	PF11305,MF_01360	N/A	N/A	N/A	N/A
KOfam	UHGV-1459903_30	K03111	144.7	9.59889e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1459903_30	phrog_44	128.3	6e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459903_30	UniRef90_UPI000750C286	206.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1459903_30	879309.HMPREF9199_0149	192.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1459903_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1459903_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1459903_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1459903_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1459903_30	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_32	phrog_9804	79.1	5.3e-23	N/A	unknown function
UniRef90	UHGV-1459903_32	UniRef90_A0A3A9I1A3	58.9	0.000000382	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1459903_32	568816.Acin_1250	52.8	0.00000829	N/A	N/A
structural_annotation	UHGV-1459903_32	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_33	phrog_5968	196.7	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459903_33	UniRef90_UPI0019608C6C	430.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1459903_33	565664.EFXG_01794	207.0	0	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-1459903_33	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1459903_33	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1459903_33	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1459903_33	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-1459903_35	K07451	51.3	0.000000000000023	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1459903_35	phrog_7370	56.1	6.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459903_35	UniRef90_A0A2S7ZGY4	189.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1459903_35	323259.Mhun_1686	56.2	0.0000000157	COG1403 Restriction endonuclease	N/A
Pfam	UHGV-1459903_35	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1459903_35	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1459903_35	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_36	phrog_72	60.8	2.1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459903_36	UniRef90_R5BGH3	127.0	1.12e-33	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1459903_36	1507.HMPREF0262_00432	95.9	2.16e-22	N/A	N/A
PHROG	UHGV-1459903_37	phrog_14970	291.1	0	N/A	unknown function
UniRef90	UHGV-1459903_37	UniRef90_A0A1C5NV07	218.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-1459903_37	642492.Clole_0944	221.0	0	double-strand break repair protein	N/A
COG	UHGV-1459903_37	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1459903_37	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1459903_38	phrog_253	106.0	3.6e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459903_38	UniRef90_A0A239Z9K6	230.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1459903_38	910314.HMPREF9220_0635	70.5	0.000000000000234	Siphovirus Gp157	N/A
Pfam	UHGV-1459903_38	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1459903_38	PF05565,NF002139	N/A	N/A	N/A	N/A