UHGV-1459975 (vOTU-169920)

Viral Genome: UHGV-1459975

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1459975
vOTU ID	vOTU-169920
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0157788
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.3 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9763
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.98
Jumbo phage	No

Genome content
Genome length (bp)	21,528
GC content	51.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	29
CDS density	79%
Average CDS length (bps)	589.03
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1459975_1	K06909	149.6	2.66247e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1459975_1	phrog_2	115.3	8.2e-34	terminase large subunit	head and packaging
UniRef90	UHGV-1459975_1	UniRef90_A0A6A8VHX7	444.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1459975_1	693746.OBV_01690	437.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1459975_1	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1459975_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1459975_1	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1459975_3	phrog_422	81.9	7.4e-24	major head protein	head and packaging
UniRef90	UHGV-1459975_3	UniRef90_A0A0M2NHR5	189.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1459975_3	1408437.JNJN01000002_gene1392	88.2	1.16e-16	N/A	N/A
Pfam	UHGV-1459975_3	PF13287	N/A	N/A	Fn3 associated	Fn3_assoc
structural_annotation	UHGV-1459975_3	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1459975_5	phrog_156	100.9	7.1e-30	portal protein	head and packaging
eggNOG-mapper	UHGV-1459975_5	693746.OBV_01670	488.0	0	N/A	N/A
structural_annotation	UHGV-1459975_5	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1459975_6	phrog_9994	50.7	0.00000000000002	N/A	unknown function
eggNOG-mapper	UHGV-1459975_6	411461.DORFOR_01178	57.8	0.000000975	N/A	N/A
PHROG	UHGV-1459975_8	phrog_24451	84.6	9.8e-25	N/A	unknown function
UniRef90	UHGV-1459975_8	UniRef90_A0A3P6KYQ0	68.9	0.00000000000189	N/A	N/A
eggNOG-mapper	UHGV-1459975_8	756499.Desde_1106	90.1	4.52e-21	N/A	N/A
PHROG	UHGV-1459975_9	phrog_28526	115.7	1.2e-34	N/A	unknown function
UniRef90	UHGV-1459975_9	UniRef90_A0A415D4T1	87.8	5.7e-22	N/A	N/A
eggNOG-mapper	UHGV-1459975_9	411462.DORLON_00769	85.9	5.54e-22	N/A	N/A
KOfam	UHGV-1459975_12	K08640	107.6	1.9e-31	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1459975_12	phrog_894	68.9	7.3e-20	endolysin	lysis
UniRef90	UHGV-1459975_12	UniRef90_R5EEQ7	214.0	0	Putative muramoyl-pentapeptide carboxypeptidase	N/A
eggNOG-mapper	UHGV-1459975_12	2754.EH55_01340	104.0	4.16e-26	Peptidase M15	N/A
Pfam	UHGV-1459975_12	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-1459975_12	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1459975_12	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1459975_12	PF08291,PF01471,TIGR02869,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1459975_13	phrog_37799	68.0	5.4e-20	N/A	unknown function
UniRef90	UHGV-1459975_13	UniRef90_UPI00156FFA68	132.0	3.98e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-1459975_13	1151292.QEW_0990	117.0	2.33e-31	Bacteriophage holin family	N/A
Pfam	UHGV-1459975_13	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1459975_13	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1459975_13	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-1459975_14	K14059	340.6	0	int; integrase	N/A
PHROG	UHGV-1459975_14	phrog_1	240.9	0	integrase	integration and excision
UniRef90	UHGV-1459975_14	UniRef90_A0A212JT46	509.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-1459975_14	877414.ATWA01000018_gene2094	494.0	0	Phage integrase family	N/A
Pfam	UHGV-1459975_14	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1459975_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1459975_14	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1459975_14	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1459975_15	K01494	83.6	1.3e-24	dcd; dCTP deaminase [EC:3.5.4.13]	N/A
UniRef90	UHGV-1459975_15	UniRef90_R6HXT8	223.0	0	Deoxycytidine deaminase-like protein	N/A
eggNOG-mapper	UHGV-1459975_15	591001.Acfer_0591	175.0	0	Belongs to the dCTP deaminase family	N/A
COG	UHGV-1459975_15	COG0717	N/A	N/A	dCTP deaminase	N/A
structural_annotation	UHGV-1459975_15	PF06559,MF_00146,TIGR02274,COG0717	N/A	N/A	N/A	N/A
KOfam	UHGV-1459975_17	K18830	60.0	5.9e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1459975_17	phrog_8	56.4	3.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1459975_17	UniRef90_E2ZIF0	120.0	1.63e-32	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1459975_17	748224.HMPREF9436_01444	120.0	2.74e-33	N/A	N/A
PADLOC	UHGV-1459975_17	retron_type_VI_hth_cluster2_1	46.4	0.00000000000079	N/A	Retron
Pfam	UHGV-1459975_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1459975_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1459975_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1459975_22	phrog_7338	44.0	0.0000000000033	N/A	unknown function
UniRef90	UHGV-1459975_22	UniRef90_A0A2U1CCE0	66.6	0.000000000000292	Excisionase family DNA binding protein	N/A
eggNOG-mapper	UHGV-1459975_22	1519439.JPJG01000054_gene2124	62.0	0.00000000000347	Helix-turn-helix domain	N/A
Pfam	UHGV-1459975_22	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1459975_22	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1459975_22	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1459975_24	phrog_5070	147.3	4.76441e-44	N/A	unknown function
UniRef90	UHGV-1459975_24	UniRef90_UPI001898F13F	126.0	6.85e-33	polymer-forming cytoskeletal protein	N/A
eggNOG-mapper	UHGV-1459975_24	887929.HMP0721_1276	100.0	2.37e-24	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1459975_24	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1459975_24	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1459975_24	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-1459975_25	phrog_4652	114.7	7.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-1459975_25	397290.C810_01459	204.0	0	N/A	N/A
structural_annotation	UHGV-1459975_25	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1459975_26	phrog_15946	59.0	9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1459975_26	1041147.AUFB01000014_gene330	63.2	0.0000000006	N/A	N/A
PHROG	UHGV-1459975_28	phrog_674	97.3	1.3e-28	N/A	unknown function
UniRef90	UHGV-1459975_28	UniRef90_UPI000422680C	72.8	0.0000000000644	N/A	N/A
eggNOG-mapper	UHGV-1459975_28	665956.HMPREF1032_03103	80.5	0.0000000000000186	N/A	N/A
Pfam	UHGV-1459975_28	PF07083	N/A	N/A	N/A	DUF1351
PHROG	UHGV-1459975_29	phrog_3657	330.0	0	N/A	unknown function
UniRef90	UHGV-1459975_29	UniRef90_UPI001DC4E782	260.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1459975_29	411461.DORFOR_00020	271.0	0	N/A	N/A