UHGV-1461236 (vOTU-116825)

Viral Genome: UHGV-1461236

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1461236
vOTU ID	vOTU-116825
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0166008
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.27 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.15
Jumbo phage	No

Genome content
Genome length (bp)	22,640
GC content	41.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	26
CDS density	93%
Average CDS length (bps)	811.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.27)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1461236_1	phrog_248	141.0	5.70048e-42	transcriptional activator	transcription regulation
UniRef90	UHGV-1461236_1	UniRef90_A0A1S9ZPZ2	259.0	0	Gp31	N/A
eggNOG-mapper	UHGV-1461236_1	1054460.SPPN_00355	259.0	0	Transcriptional regulator, ArpU family	N/A
NCBIFam	UHGV-1461236_1	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-1461236_1	PF07374,TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-1461236_2	K04763	97.3	2.1e-28	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1461236_2	phrog_216	175.8	0	integrase	integration and excision
UniRef90	UHGV-1461236_2	UniRef90_E1LN23	358.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1461236_2	585203.SMSK564_1292	358.0	0	Phage integrase family	N/A
Pfam	UHGV-1461236_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1461236_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1461236_2	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_3	phrog_338	116.1	3.3e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1461236_3	UniRef90_C1C9P3	246.0	0	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-1461236_3	157924.Q7Y4J1_9CAUD	201.0	0	HNH endonuclease	N/A
Pfam	UHGV-1461236_3	PF01844	N/A	N/A	HNH endonuclease	HNH
structural_annotation	UHGV-1461236_3	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_4	phrog_104	328.2	0	portal protein	head and packaging
UniRef90	UHGV-1461236_4	UniRef90_A0A4J1ZT89	806.0	0	Gp34	N/A
eggNOG-mapper	UHGV-1461236_4	1069534.LRC_07240	642.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1461236_4	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_5	phrog_7104	935.9	0	N/A	unknown function
UniRef90	UHGV-1461236_5	UniRef90_A0A0E8ZU68	846.0	0	Gp35	N/A
eggNOG-mapper	UHGV-1461236_5	585203.SMSK564_1288	716.0	0	N/A	N/A
structural_annotation	UHGV-1461236_5	PF03496	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_6	phrog_6473	143.0	4.1058e-43	N/A	unknown function
eggNOG-mapper	UHGV-1461236_6	864570.HMPREF9189_1691	89.0	5.08e-22	N/A	N/A
PHROG	UHGV-1461236_7	phrog_7268	156.4	0	N/A	unknown function
PHROG	UHGV-1461236_8	phrog_17688	500.8	0	N/A	unknown function
UniRef90	UHGV-1461236_8	UniRef90_A0A0E8ZYE1	950.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1461236_8	768726.HMPREF9178_1065	855.0	0	phage terminase, large subunit	N/A
COG	UHGV-1461236_8	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1461236_8	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_9	phrog_36217	219.8	0	N/A	unknown function
UniRef90	UHGV-1461236_9	UniRef90_A0A139PKI3	259.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-1461236_9	768726.HMPREF9178_1064	173.0	0	N/A	N/A
Pfam	UHGV-1461236_9	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1461236_9	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_10	phrog_32396	160.4	0	N/A	unknown function
UniRef90	UHGV-1461236_10	UniRef90_A0A1S5SD91	547.0	0	Structural protein	N/A
eggNOG-mapper	UHGV-1461236_10	1121864.OMO_02152	489.0	0	Phage capsid family	N/A
Pfam	UHGV-1461236_10	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-1461236_10	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_11	phrog_1539	84.2	1.1e-24	Arc-like repressor	transcription regulation
UniRef90	UHGV-1461236_11	UniRef90_S7YZE5	136.0	8.52003e-41	HeH domain-containing protein	N/A
Pfam	UHGV-1461236_11	PF12949	N/A	N/A	HeH/LEM domain	HeH
structural_annotation	UHGV-1461236_11	PF12949	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_12	phrog_137	144.0	3.50325e-43	head-tail adaptor Ad1	connector
UniRef90	UHGV-1461236_12	UniRef90_A0A0T8PI38	285.0	0	Gp42	N/A
eggNOG-mapper	UHGV-1461236_12	585203.SMSK564_1282	198.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1461236_12	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1461236_12	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_13	phrog_501	106.4	1.7e-31	head closure Hc1	connector
UniRef90	UHGV-1461236_13	UniRef90_A0A139NBR3	178.0	0	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1461236_13	1321820.HMPREF1983_00930	175.0	0	N/A	N/A
structural_annotation	UHGV-1461236_13	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_14	phrog_387	93.2	1.5e-27	neck protein	connector
UniRef90	UHGV-1461236_14	UniRef90_A0A0E9GXC0	138.0	2.57993e-41	N/A	N/A
eggNOG-mapper	UHGV-1461236_14	1231377.C426_1733	64.3	0.00000000000111	N/A	N/A
PHROG	UHGV-1461236_15	phrog_123	67.8	1.8e-19	tail terminator	connector
UniRef90	UHGV-1461236_15	UniRef90_A0A0E8ZUI3	226.0	0	Gp45	N/A
eggNOG-mapper	UHGV-1461236_15	585203.SMSK564_1280	171.0	0	N/A	N/A
structural_annotation	UHGV-1461236_15	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_16	phrog_117	180.9	0	major tail protein	tail
UniRef90	UHGV-1461236_16	UniRef90_A0A1S5SD31	341.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1461236_16	585203.SMSK564_1279	356.0	0	domain, Protein	N/A
COG	UHGV-1461236_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461236_16	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_17	phrog_1526	100.1	1.2e-29	N/A	unknown function
UniRef90	UHGV-1461236_17	UniRef90_A0A0E9GVS8	150.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1461236_17	883110.HMPREF9260_00652	52.0	0.000000163	N/A	N/A
PHROG	UHGV-1461236_18	phrog_1633	190.2	0	N/A	unknown function
UniRef90	UHGV-1461236_18	UniRef90_UPI00156526D2	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461236_18	585203.SMSK564_1277	226.0	0	N/A	N/A
Pfam	UHGV-1461236_18	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1461236_18	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_19	phrog_58	413.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1461236_19	UniRef90_A0A822QK95	904.0	0	PblA	N/A
eggNOG-mapper	UHGV-1461236_19	585203.SMSK564_1276	703.0	0	phage tail tape measure protein	N/A
COG	UHGV-1461236_19	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461236_19	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_20	phrog_33	71.4	2e-20	distal tail protein Dit	tail
UniRef90	UHGV-1461236_20	UniRef90_V8IJG6	420.0	0	Adenylosuccinate synthetase	N/A
eggNOG-mapper	UHGV-1461236_20	1054460.SPPN_00450	420.0	0	N/A	N/A
COG	UHGV-1461236_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1461236_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_21	phrog_1210	1684.5	0	PblB-type receptor binding	other
UniRef90	UHGV-1461236_21	UniRef90_UPI000766BF86	2257.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1461236_21	1566990.A0A0A0YV37_9CAUD	1219.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1461236_21	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1461236_21	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
Pfam	UHGV-1461236_21	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1461236_21	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1461236_21	PF14594,PF00629,PF10528,TIGR01665,NF033675,NF038393,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_22	phrog_12683	86.9	1.7e-25	N/A	unknown function
UniRef90	UHGV-1461236_22	UniRef90_A0A081R6K4	61.6	0.0000000000386	ATP synthase F0 sector subunit C	N/A
eggNOG-mapper	UHGV-1461236_22	1000588.HMPREF9965_1688	59.7	0.0000000000374	N/A	N/A
PHROG	UHGV-1461236_23	phrog_1554	244.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1461236_23	1095737.HMPREF1110_1749	366.0	0	N/A	N/A
structural_annotation	UHGV-1461236_23	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-1461236_24	phrog_4257	145.4	2.00386e-43	N/A	unknown function
UniRef90	UHGV-1461236_24	UniRef90_A0A139QI86	153.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1461236_24	1095737.HMPREF1110_1750	222.0	0	N/A	N/A
PHROG	UHGV-1461236_25	phrog_608	149.1	9.80909e-45	holin	lysis
UniRef90	UHGV-1461236_25	UniRef90_UPI001CBF2642	192.0	0	phage holin	N/A
eggNOG-mapper	UHGV-1461236_25	1000588.HMPREF9965_1685	192.0	0	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1461236_25	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-1461236_25	TIGR01673.1	N/A	N/A	phage holin	N/A
KOfam	UHGV-1461236_26	K01447	59.9	4.8e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1461236_26	phrog_1110	373.6	0	endolysin	lysis
UniRef90	UHGV-1461236_26	UniRef90_A0A1X1K5N9	548.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-1461236_26	1054460.SPPN_05425	533.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1461236_26	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1461236_26	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1461236_26	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1461236_26	PF19127,PF01510,TIGR04035,COG5263	N/A	N/A	N/A	N/A