UHGV-1461493 (vOTU-022055)

Viral Genome: UHGV-1461493

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1461493
vOTU ID	vOTU-022055
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0236719
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.55 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9739
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.36
Jumbo phage	No

Genome content
Genome length (bp)	34,653
GC content	56.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	91%
Average CDS length (bps)	582.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1461493_1	K14059	48.7	0.00000000000015	int; integrase	N/A
eggNOG-mapper	UHGV-1461493_1	632335.Calkr_0670	64.7	0.0000000000821	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1461493_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-1461493_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-1461493_2	K14059	230.7	0	int; integrase	N/A
PHROG	UHGV-1461493_2	phrog_1	181.0	0	integrase	integration and excision
UniRef90	UHGV-1461493_2	UniRef90_A0A1Q6PVS0	291.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1461493_2	1235797.C816_02288	220.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1461493_2	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1461493_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1461493_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1461493_2	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1461493_3	218140.BPSY_1280	67.8	0.000000000000063	N/A	N/A
structural_annotation	UHGV-1461493_3	TIGR04165,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_4	phrog_18586	71.7	2.4e-21	N/A	unknown function
UniRef90	UHGV-1461493_4	UniRef90_UPI001C0E3835	190.0	0	restriction endonuclease	N/A
eggNOG-mapper	UHGV-1461493_4	913865.DOT_3033	165.0	0	N/A	N/A
Pfam	UHGV-1461493_4	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
structural_annotation	UHGV-1461493_4	PF04471,COG1715	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1461493_5	411902.CLOBOL_04414	94.7	1.18e-23	N/A	N/A
structural_annotation	UHGV-1461493_5	PF19363,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461493_6	UniRef90_M9LXJ4	155.0	4.5e-40	Polyketide synthase module	N/A
eggNOG-mapper	UHGV-1461493_6	411902.CLOBOL_04413	284.0	0	N/A	N/A
structural_annotation	UHGV-1461493_6	PF20505,NF001460,COG2974	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_7	phrog_1863	66.1	3.2e-19	N/A	unknown function
UniRef90	UHGV-1461493_7	UniRef90_A0A8D9UH94	73.6	0.00000000000000167	Hemolysin	N/A
eggNOG-mapper	UHGV-1461493_7	1226322.HMPREF1545_04027	72.8	5.36e-16	N/A	N/A
PHROG	UHGV-1461493_8	phrog_28673	55.3	4.2e-16	tail protein	tail
UniRef90	UHGV-1461493_8	UniRef90_A0A7X7MVN5	84.3	0.0000000000000396	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-1461493_8	1540090.A0A0A0RS40_9CAUD	83.6	0.0000000000000678	N/A	N/A
Pfam	UHGV-1461493_8	PF13385	N/A	N/A	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
structural_annotation	UHGV-1461493_8	PF14606,PF00722	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_10	phrog_3558	379.0	0	tail protein	tail
UniRef90	UHGV-1461493_10	UniRef90_A0A7U9XC50	263.0	0	Chromosome partition protein Smc	N/A
eggNOG-mapper	UHGV-1461493_10	877414.ATWA01000019_gene2050	241.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1461493_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1461493_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1461493_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1461493_10	PF06605,PF21683,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_11	phrog_33	51.7	0.00000000000002	distal tail protein Dit	tail
UniRef90	UHGV-1461493_11	UniRef90_A0A351TQW0	235.0	0	MtfA protein	N/A
eggNOG-mapper	UHGV-1461493_11	1304866.K413DRAFT_1235	206.0	0	PFAM Phage tail protein	N/A
COG	UHGV-1461493_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1461493_11	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_12	phrog_6900	250.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1461493_12	1123312.KB904569_gene357	306.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1461493_12	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1461493_12	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_14	phrog_1021	71.4	1.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-1461493_14	1256908.HMPREF0373_00470	84.3	6.08e-19	N/A	N/A
PHROG	UHGV-1461493_15	phrog_885	180.7	0	major tail protein	tail
eggNOG-mapper	UHGV-1461493_15	1256908.HMPREF0373_00471	176.0	0	N/A	N/A
structural_annotation	UHGV-1461493_15	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1461493_16	1235800.C819_02229	115.0	1.87e-31	N/A	N/A
structural_annotation	UHGV-1461493_16	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461493_17	UniRef90_UPI001379FEE4	106.0	2e-26	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1461493_17	1256908.HMPREF0373_00473	98.2	4.74e-24	N/A	N/A
Pfam	UHGV-1461493_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1461493_17	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_18	phrog_1059	85.9	3e-25	head-tail adaptor	connector
UniRef90	UHGV-1461493_18	UniRef90_A0A1C6E9J3	143.0	3.20057e-42	Bacteriophage head-tail adaptor	N/A
eggNOG-mapper	UHGV-1461493_18	1256908.HMPREF0373_00474	118.0	5.57e-33	N/A	N/A
structural_annotation	UHGV-1461493_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_19	phrog_1236	150.9	4.2039e-45	head protein	head and packaging
eggNOG-mapper	UHGV-1461493_19	1256908.HMPREF0373_00475	157.0	0	N/A	N/A
structural_annotation	UHGV-1461493_19	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_20	phrog_544	227.1	0	major head protein	head and packaging
UniRef90	UHGV-1461493_20	UniRef90_UPI000E5CD0B7	429.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1461493_20	411471.SUBVAR_06940	268.0	0	N/A	N/A
NCBIFam	UHGV-1461493_20	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1461493_20	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_21	phrog_194	68.9	9.6e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-1461493_21	UniRef90_A0A6N3C3T0	91.3	3.63e-19	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1461493_21	929506.CbC4_1215	71.2	0.00000000000165	Phage minor structural protein GP20	N/A
Pfam	UHGV-1461493_21	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1461493_21	PF06810	N/A	N/A	N/A	N/A
KOfam	UHGV-1461493_22	K21471	53.7	0.0000000000000049	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-1461493_22	phrog_2649	77.4	1.6e-22	endolysin	lysis
UniRef90	UHGV-1461493_22	UniRef90_A0A3D5IDY5	273.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-1461493_22	44060.JODL01000010_gene1575	79.0	0.0000000000000738	Negative regulator of	N/A
Pfam	UHGV-1461493_22	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-1461493_22	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1461493_22	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1461493_22	PF00877,PF01471,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_23	phrog_1129	71.6	7.3e-21	holin	lysis
UniRef90	UHGV-1461493_23	UniRef90_A0A3D5IBP7	169.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1461493_23	411461.DORFOR_00721	104.0	2.91e-28	N/A	N/A
Pfam	UHGV-1461493_23	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1461493_23	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_25	phrog_595	163.2	0	head maturation protease	head and packaging
UniRef90	UHGV-1461493_25	UniRef90_A0A3D5ID44	903.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1461493_25	1256908.HMPREF0373_00484	295.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1461493_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1461493_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461493_25	PF04233,PF15188,PF04002,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_26	phrog_64	286.2	0	portal protein	head and packaging
UniRef90	UHGV-1461493_26	UniRef90_A0A3D2GX93	887.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1461493_26	1256908.HMPREF0373_00485	573.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1461493_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1461493_26	PF05133,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461493_27	UniRef90_UPI0018835F0C	78.2	0.00000000000243	collagen-like protein	N/A
eggNOG-mapper	UHGV-1461493_27	476272.RUMHYD_00002	100.0	1.28e-20	N/A	N/A
KOfam	UHGV-1461493_28	K06909	414.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1461493_28	phrog_3717	248.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1461493_28	UniRef90_A0A1Q6Q1R5	853.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1461493_28	887325.HMPREF0381_0087	576.0	0	Terminase-like family	N/A
Pfam	UHGV-1461493_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1461493_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1461493_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1461493_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-1461493_28	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-1461493_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1461493_29	K07474	146.8	2.29813e-43	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1461493_29	phrog_51	154.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-1461493_29	UniRef90_A0A3D5IBW1	310.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1461493_29	1256908.HMPREF0373_00489	179.0	0	Terminase small subunit	N/A
Pfam	UHGV-1461493_29	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1461493_29	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
UniRef90	UHGV-1461493_30	UniRef90_A0A3D2GX58	154.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1461493_30	665950.HMPREF1025_01508	48.9	0.00000331	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1461493_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1461493_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1461493_30	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_32	phrog_36	70.0	4.1e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1461493_32	UniRef90_UPI000368796A	106.0	1.08e-26	N/A	N/A
eggNOG-mapper	UHGV-1461493_32	1120978.KB894081_gene99	106.0	1.86e-27	N/A	N/A
COG	UHGV-1461493_32	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1461493_32	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_35	phrog_186	57.6	1.9e-16	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1461493_35	UniRef90_A0A3D5IDX7	561.0	0	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1461493_35	1139219.I569_00217	60.5	0.000000108	Replication initiation and membrane attachment	N/A
Pfam	UHGV-1461493_35	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1461493_35	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1461493_35	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1461493_35	PF03444,MF_01911,TIGR01610,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_36	phrog_4973	45.3	0.0000000000013	N/A	unknown function
UniRef90	UHGV-1461493_36	UniRef90_A0A1W1YSW9	64.3	0.000000000011	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1461493_36	1038869.AXAN01000006_gene942	53.9	0.0000000282	Helix-turn-helix domain	N/A
Pfam	UHGV-1461493_36	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1461493_36	PF14090,TIGR00373,COG4344	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_38	phrog_190	126.6	1.6e-37	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1461493_38	UniRef90_A0A416AFS0	124.0	4.99e-34	N/A	N/A
eggNOG-mapper	UHGV-1461493_38	1236514.BAKL01000051_gene3708	96.3	6.2e-24	N/A	N/A
Pfam	UHGV-1461493_38	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1461493_38	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1461493_39	K03111	91.8	1.3e-26	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1461493_39	phrog_44	87.8	1.8e-25	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1461493_39	UniRef90_G9WTJ7	88.2	8e-20	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1461493_39	1235793.C809_02091	88.2	1.92e-20	Single-strand binding protein family	N/A
Pfam	UHGV-1461493_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1461493_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1461493_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1461493_39	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1461493_44	PF10656	N/A	N/A	N/A	N/A
PHROG	UHGV-1461493_48	phrog_8	47.1	0.00000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-1461493_48	UniRef90_UPI0018AB2E42	54.3	0.000000995	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1461493_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1461493_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1461493_52	K22300	68.8	1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1461493_52	phrog_8	52.8	0.000000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-1461493_52	UniRef90_UPI001C3B31CB	103.0	2.45e-25	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1461493_52	927704.SELR_14540	89.0	9.35e-21	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1461493_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1461493_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1461493_52	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1461493_53	431943.CKL_1820	66.2	0.000000000137	N/A	N/A
structural_annotation	UHGV-1461493_53	PF19448	N/A	N/A	N/A	N/A
KOfam	UHGV-1461493_54	K22300	47.7	0.00000000000018	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1461493_54	phrog_2439	299.0	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1461493_54	UniRef90_UPI00067EDF4A	428.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1461493_54	431943.CKL_1821	270.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1461493_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1461493_54	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1461493_54	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1461493_54	PF06114,PF01381,MF_00584,NF038139,COG2856,COG1476	N/A	N/A	N/A	N/A