UHGV-1462127 (vOTU-034427)

Viral Genome: UHGV-1462127

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1462127
vOTU ID	vOTU-034427
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0231316
Associated BioSample	SAMEA3664617
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.983
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.24
Jumbo phage	No

Genome content
Genome length (bp)	33,575
GC content	55.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	93%
Average CDS length (bps)	591.68
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1462127_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_3	phrog_20016	206.4	0	N/A	unknown function
UniRef90	UHGV-1462127_3	UniRef90_A0A285PT46	219.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1462127_3	1226322.HMPREF1545_00077	187.0	0	N/A	N/A
structural_annotation	UHGV-1462127_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_4	phrog_16490	152.0	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-1462127_4	1408437.JNJN01000043_gene803	147.0	6.92003e-41	N/A	N/A
PHROG	UHGV-1462127_5	phrog_22984	76.3	2.2e-22	N/A	unknown function
PHROG	UHGV-1462127_6	phrog_21718	124.1	8.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-1462127_6	397290.C810_05210	102.0	2.66e-25	N/A	N/A
PHROG	UHGV-1462127_7	phrog_3754	100.8	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1462127_7	1235790.C805_00054	114.0	5.61e-31	N/A	N/A
COG	UHGV-1462127_9	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1462127_9	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_10	phrog_99	54.5	0.0000000000000016	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462127_10	UniRef90_A0A0K9N8D8	95.5	2.87e-20	Putative AP2 domain protein	N/A
eggNOG-mapper	UHGV-1462127_10	742740.HMPREF9474_00071	93.6	2.51e-20	N/A	N/A
Pfam	UHGV-1462127_10	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-1462127_10	PF18337,PF00847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462127_11	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1462127_14	K24213	55.8	4.7e-16	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1462127_14	phrog_6320	63.8	1.9e-18	tail fiber protein	tail
UniRef90	UHGV-1462127_14	UniRef90_UPI0018835F0C	568.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1462127_14	411483.FAEPRAA2165_00757	172.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1462127_14	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1462127_14	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_15	phrog_15303	117.4	5.8e-35	N/A	unknown function
Pfam	UHGV-1462127_15	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1462127_17	K07273	164.2	0	acm; lysozyme	N/A
PHROG	UHGV-1462127_17	phrog_291	120.5	1.5e-35	endolysin	lysis
UniRef90	UHGV-1462127_17	UniRef90_A0A564U0D3	334.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1462127_17	718252.FP2_04890	210.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1462127_17	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1462127_17	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1462127_17	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_18	phrog_2310	58.5	6.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-1462127_19	657322.FPR_13530	62.4	0.000000092	domain, Protein	N/A
COG	UHGV-1462127_19	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_20	phrog_3558	207.5	0	tail protein	tail
UniRef90	UHGV-1462127_20	UniRef90_UPI001C01D15B	161.0	8.11e-39	phage tail protein	N/A
eggNOG-mapper	UHGV-1462127_20	1235799.C818_04233	99.8	1.74e-19	Prophage endopeptidase tail	N/A
Pfam	UHGV-1462127_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1462127_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1462127_20	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462127_21	UniRef90_A0A417QGC1	116.0	4.42e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-1462127_21	1235792.C808_00094	99.0	3.92e-22	phage tail	N/A
COG	UHGV-1462127_21	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1462127_21	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_22	phrog_28775	126.9	7.8e-39	tail length tape measure protein	tail
UniRef90	UHGV-1462127_22	UniRef90_A0A6N7TLD3	1111.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1462127_22	1492737.FEM08_12070	141.0	3.52e-32	tape measure	N/A
Pfam	UHGV-1462127_22	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1462127_22	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1462127_22	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1462127_22	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_25	phrog_885	71.3	1.1e-20	major tail protein	tail
eggNOG-mapper	UHGV-1462127_25	1111121.HMPREF1247_0789	152.0	2.8026e-44	N/A	N/A
structural_annotation	UHGV-1462127_25	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462127_26	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_27	phrog_17977	40.8	0.000000000029	N/A	unknown function
UniRef90	UHGV-1462127_27	UniRef90_A0A844DHJ8	115.0	1.08e-30	Phage head closure protein	N/A
structural_annotation	UHGV-1462127_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_29	phrog_544	131.0	9.2e-39	major head protein	head and packaging
UniRef90	UHGV-1462127_29	UniRef90_A0A395X7A1	370.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1462127_29	476272.RUMHYD_01776	301.0	0	N/A	N/A
structural_annotation	UHGV-1462127_29	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_32	phrog_5	43.9	0.0000000000052	tail completion or Neck1 protein	connector
UniRef90	UHGV-1462127_32	UniRef90_A0A6N7TNP6	270.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1462127_32	929506.CbC4_1219	87.0	9.46e-20	N/A	N/A
structural_annotation	UHGV-1462127_32	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462127_34	PF17599,PF14282,NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_35	phrog_8680	199.4	0	N/A	unknown function
UniRef90	UHGV-1462127_35	UniRef90_A0A844D688	451.0	0	N/A	N/A
eggNOG-mapper	UHGV-1462127_35	1423790.BN53_04265	178.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1462127_35	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1462127_35	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1462127_35	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_37	phrog_2468	82.0	9.8e-24	head morphogenesis	head and packaging
UniRef90	UHGV-1462127_37	UniRef90_A0A6N7TLR7	590.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1462127_37	1504822.CCNO01000013_gene286	108.0	3.89e-23	cell adhesion	N/A
Pfam	UHGV-1462127_37	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1462127_37	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462127_37	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_38	phrog_64	120.6	5.7e-36	portal protein	head and packaging
UniRef90	UHGV-1462127_38	UniRef90_A0A6N7TNT3	895.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1462127_38	642492.Clole_2764	78.2	0.00000000000128	phage portal protein, SPP1	N/A
Pfam	UHGV-1462127_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1462127_38	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1462127_39	K06909	139.5	2.79993e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1462127_39	phrog_10250	174.6	0	N/A	unknown function
UniRef90	UHGV-1462127_39	UniRef90_A0A844D8I4	835.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1462127_39	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1462127_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1462127_39	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1462127_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1462127_39	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462127_40	UniRef90_UPI0018CC2891	113.0	3.35e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1462127_40	1235790.C805_00037	111.0	3.67e-29	N/A	N/A
structural_annotation	UHGV-1462127_40	PF04218	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462127_41	UniRef90_A0A6N7TNN9	63.9	0.000000000724	N/A	N/A
structural_annotation	UHGV-1462127_41	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-1462127_43	K01160	60.2	5.8e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1462127_43	phrog_34	62.1	1.1e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462127_43	UniRef90_A0A6N7TND6	226.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1462127_43	875454.BAEW01000002_gene491	135.0	1.18e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1462127_43	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1462127_43	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1462127_43	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_44	phrog_3136	129.3	1.4e-38	N/A	unknown function
UniRef90	UHGV-1462127_44	UniRef90_UPI001C02A61B	193.0	0	ASCH domain-containing protein	N/A
COG	UHGV-1462127_44	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1462127_44	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462127_49	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1462127_50	K02086	62.5	4.3e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-1462127_50	phrog_186	68.3	1.2e-19	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462127_50	UniRef90_A0A6N7TLH4	439.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1462127_50	877411.JMMA01000002_gene2052	59.7	0.000000134	N/A	N/A
Pfam	UHGV-1462127_50	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1462127_50	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1462127_50	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1462127_50	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462127_51	UniRef90_UPI001CBB85F6	111.0	1.33e-27	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1462127_51	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1462127_52	phrog_2760	187.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462127_52	UniRef90_A0A3A6EAW6	439.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1462127_52	1235794.C811_01355	160.0	1.4013e-44	RecT family	N/A
Pfam	UHGV-1462127_52	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1462127_52	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1462127_52	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1462127_52	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A