UHGV-1462980 (vOTU-107397)

Viral Genome: UHGV-1462980

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1462980
vOTU ID	vOTU-107397
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0175937
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.85 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.46
Jumbo phage	No

Genome content
Genome length (bp)	24,057
GC content	54.73%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	87%
Average CDS length (bps)	487.88
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1462980_1	UniRef90_A0A6N7TLR7	345.0	0	Phage_Mu_F domain-containing protein	N/A
PHROG	UHGV-1462980_3	phrog_64	120.7	5.3e-36	portal protein	head and packaging
UniRef90	UHGV-1462980_3	UniRef90_A0A6N7TNT3	869.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1462980_3	642492.Clole_2764	83.2	0.0000000000000318	phage portal protein, SPP1	N/A
Pfam	UHGV-1462980_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1462980_3	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1462980_4	K06909	142.7	3.39955e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1462980_4	phrog_10250	172.2	0	N/A	unknown function
UniRef90	UHGV-1462980_4	UniRef90_A0A844D8I4	850.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1462980_4	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1462980_4	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1462980_4	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1462980_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1462980_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1462980_4	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_5	phrog_309	100.9	1.1e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1462980_5	UniRef90_A0A417T189	88.2	5.32e-19	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1462980_5	748224.HMPREF9436_03342	159.0	0	transposase activity	N/A
COG	UHGV-1462980_5	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-1462980_6	K00571	99.8	3.6e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1462980_6	phrog_498	396.4	0	DNA methyltransferase	other
UniRef90	UHGV-1462980_6	UniRef90_UPI0012DE0D94	435.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1462980_6	1423758.BN55_01455	380.0	0	DNA methylase	N/A
PADLOC	UHGV-1462980_6	MTase_II_00015	345.8	0	Type II methyltransferase	RM
Pfam	UHGV-1462980_6	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1462980_6	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1462980_6	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1462980_6	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_7	phrog_36	40.8	0.000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-1462980_7	UniRef90_A0A6N7TNN9	61.2	0.0000000178	N/A	N/A
structural_annotation	UHGV-1462980_7	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-1462980_9	K01160	60.2	6.2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1462980_9	phrog_34	61.3	1.9e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462980_9	UniRef90_A0A6N7TND6	222.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1462980_9	875454.BAEW01000002_gene491	137.0	2.9e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1462980_9	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1462980_9	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1462980_9	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462980_10	UniRef90_UPI0006DCB293	83.6	5.21e-19	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1462980_10	411490.ANACAC_02386	73.6	0.0000000000000136	Phosphoadenosine phosphosulfate reductase	N/A
COG	UHGV-1462980_10	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
KOfam	UHGV-1462980_11	K00390	112.0	4.2e-33	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1462980_11	phrog_424	119.6	2.7e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1462980_11	UniRef90_A0A1Y4LU27	303.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1462980_11	1408437.JNJN01000032_gene2312	282.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1462980_11	BrxP_00001	76.9	3e-23	BrxP	BREX
Pfam	UHGV-1462980_11	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1462980_11	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1462980_11	PF01507,MF_00064,TIGR02039,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462980_12	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1462980_13	K02086	63.7	2.2e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-1462980_13	phrog_186	72.7	6.2e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462980_13	UniRef90_A0A6N7TLH4	437.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1462980_13	877411.JMMA01000002_gene2052	63.2	0.00000000753	N/A	N/A
Pfam	UHGV-1462980_13	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1462980_13	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1462980_13	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1462980_13	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462980_14	UniRef90_UPI001CBB85F6	112.0	4.74e-28	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1462980_14	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_15	phrog_2760	187.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1462980_15	UniRef90_A0A3A6EAW6	493.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1462980_15	1235794.C811_01355	155.0	6.30584e-43	RecT family	N/A
Pfam	UHGV-1462980_15	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1462980_15	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1462980_15	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1462980_15	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_16	phrog_674	142.1	4.19969e-42	N/A	unknown function
UniRef90	UHGV-1462980_16	UniRef90_A0A3A6E846	463.0	0	N/A	N/A
eggNOG-mapper	UHGV-1462980_16	556268.OFAG_00840	83.6	9.18e-16	N/A	N/A
Pfam	UHGV-1462980_16	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1462980_16	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462980_17	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462980_18	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462980_19	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462980_20	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1462980_22	1121865.OMW_01950	65.9	0.000000000000353	N/A	N/A
structural_annotation	UHGV-1462980_22	PF17516,NF007197	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_24	phrog_15946	78.0	1.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1462980_24	1041147.AUFB01000014_gene330	58.5	0.0000000284	N/A	N/A
PHROG	UHGV-1462980_25	phrog_4652	92.1	1.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1462980_25	397290.C810_01459	158.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-1462980_25	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_28	phrog_32852	45.0	0.0000000000016	N/A	unknown function
KOfam	UHGV-1462980_30	K22300	63.5	4.7e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1462980_30	phrog_8	47.5	0.00000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-1462980_30	UniRef90_A0A844DFR0	223.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1462980_30	748224.HMPREF9436_01444	171.0	0	N/A	N/A
PADLOC	UHGV-1462980_30	retron_type_VI_hth_cluster2_1	41.3	0.00000000003	N/A	Retron
Pfam	UHGV-1462980_30	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1462980_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1462980_30	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_32	phrog_888	67.9	4.7e-36	N/A	unknown function
UniRef90	UHGV-1462980_32	UniRef90_A0A6N7TMA2	413.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1462980_32	1415774.U728_165	83.6	2.22e-16	Short C-terminal domain	N/A
Pfam	UHGV-1462980_32	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1462980_32	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1462980_32	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-1462980_35	K15773	41.2	0.000000000032	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-1462980_35	UniRef90_A0A6N7TLT0	362.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1462980_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1462980_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1462980_35	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1462980_36	K14059	146.2	4.1058e-43	int; integrase	N/A
PHROG	UHGV-1462980_36	phrog_1	170.2	0	integrase	integration and excision
UniRef90	UHGV-1462980_36	UniRef90_A0A174D176	400.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-1462980_36	411471.SUBVAR_05137	245.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1462980_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1462980_36	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1462980_36	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462980_38	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_39	phrog_20016	205.8	0	N/A	unknown function
UniRef90	UHGV-1462980_39	UniRef90_A0A285PT46	219.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1462980_39	1226322.HMPREF1545_00077	189.0	0	N/A	N/A
structural_annotation	UHGV-1462980_39	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1462980_40	phrog_16490	143.7	9.79508e-43	N/A	unknown function
eggNOG-mapper	UHGV-1462980_40	1408437.JNJN01000043_gene803	141.0	2.38e-38	N/A	N/A
PHROG	UHGV-1462980_41	phrog_22984	75.3	4.4e-22	N/A	unknown function
PHROG	UHGV-1462980_42	phrog_21718	124.6	6e-37	N/A	unknown function
eggNOG-mapper	UHGV-1462980_42	397290.C810_05210	102.0	1.33e-25	N/A	N/A
PHROG	UHGV-1462980_43	phrog_3754	98.1	8.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-1462980_43	1235790.C805_00054	107.0	3.01e-28	N/A	N/A