UHGV-1463078 (vOTU-110109)

Viral Genome: UHGV-1463078

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1463078
vOTU ID	vOTU-110109
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0164942
Associated BioSample	SAMN02333926
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.27 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.42
Jumbo phage	No

Genome content
Genome length (bp)	22,490
GC content	57.92%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	92%
Average CDS length (bps)	592.29
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.27)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1463078_1	phrog_10613	46.0	0.000000000000052	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1463078_1	1195236.CTER_5104	88.6	1.91e-17	nuclear chromosome segregation	N/A
COG	UHGV-1463078_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1463078_1	PF06120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1463078_2	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_3	phrog_88	44.2	0.0000000000029	major tail protein	tail
structural_annotation	UHGV-1463078_3	PF06488,TIGR01603	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_5	phrog_5	44.7	0.0000000000029	tail completion or Neck1 protein	connector
UniRef90	UHGV-1463078_5	UniRef90_UPI000684DFDC	59.7	0.0000000146	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1463078_5	1195236.CTER_5108	79.7	3.88e-17	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-1463078_5	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1463078_5	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_6	phrog_1951	66.4	3.5e-19	head-tail adaptor	connector
UniRef90	UHGV-1463078_6	UniRef90_UPI00195B41A2	162.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-1463078_6	411470.RUMGNA_02070	67.4	0.00000000000036	N/A	N/A
NCBIFam	UHGV-1463078_6	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1463078_6	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_7	phrog_5223	72.8	3.1e-21	neck protein	connector
UniRef90	UHGV-1463078_7	UniRef90_UPI00195CBB4A	140.0	1.46996e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1463078_7	411471.SUBVAR_05853	93.6	1.17e-23	N/A	N/A
PHROG	UHGV-1463078_8	phrog_10	57.4	2e-16	major head protein	head and packaging
UniRef90	UHGV-1463078_8	UniRef90_A0A1C5W5F9	448.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1463078_8	742740.HMPREF9474_04304	396.0	0	Phage capsid family	N/A
Pfam	UHGV-1463078_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1463078_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1463078_8	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1463078_9	K06904	120.2	2.4e-35	N/A	N/A
PHROG	UHGV-1463078_9	phrog_80	130.2	2.2e-38	head maturation protease	head and packaging
UniRef90	UHGV-1463078_9	UniRef90_A0A1C5W530	272.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-1463078_9	411471.SUBVAR_05851	251.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1463078_9	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-1463078_9	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1463078_9	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_10	phrog_12	117.4	1e-34	portal protein	head and packaging
UniRef90	UHGV-1463078_10	UniRef90_UPI00195C5E58	650.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1463078_10	742740.HMPREF9474_04306	591.0	0	Phage portal protein	N/A
Pfam	UHGV-1463078_10	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1463078_10	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1463078_10	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_11	phrog_9	331.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1463078_11	UniRef90_A0A8J6TY49	891.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1463078_11	411471.SUBVAR_05848	789.0	0	large subunit	N/A
Pfam	UHGV-1463078_11	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1463078_11	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1463078_11	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1463078_11	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_12	phrog_1066	87.0	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1463078_12	1094508.Tsac_2428	97.4	1.04e-24	N/A	N/A
structural_annotation	UHGV-1463078_12	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_13	phrog_119	66.9	3e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463078_13	UniRef90_UPI00195B555F	181.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1463078_13	543734.LCABL_11060	104.0	9.56e-28	HNH endonuclease	N/A
Pfam	UHGV-1463078_13	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1463078_13	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1463078_14	phrog_36	66.9	3.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1463078_14	UniRef90_A0A6N8H4L3	167.0	0	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-1463078_14	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1463078_14	PF04545,TIGR02984	N/A	N/A	N/A	N/A
KOfam	UHGV-1463078_16	K03497	82.4	8.8e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1463078_16	phrog_4715	126.8	6.5e-38	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463078_16	UniRef90_A0A1Q6T350	830.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1463078_16	411471.SUBVAR_05842	374.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1463078_16	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1463078_16	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1463078_16	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1463078_17	K03496	221.3	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1463078_17	phrog_164	169.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463078_17	UniRef90_A0A6N8H6J9	388.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1463078_17	411471.SUBVAR_05839	280.0	0	AAA domain	N/A
Pfam	UHGV-1463078_17	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1463078_17	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1463078_17	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1463078_18	K02314	229.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1463078_18	phrog_19	215.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463078_18	UniRef90_A0A6N8GZX5	806.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1463078_18	411471.SUBVAR_05838	421.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1463078_18	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1463078_18	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1463078_18	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1463078_18	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_19	phrog_678	76.5	4.6e-22	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463078_19	UniRef90_A0A6N8H2D2	380.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1463078_19	411471.SUBVAR_05835	152.0	1.96042e-42	Helix-turn-helix domain	N/A
Pfam	UHGV-1463078_19	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1463078_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1463078_19	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1463078_20	K03111	129.4	4.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1463078_20	phrog_44	133.3	1.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463078_20	UniRef90_A0A1Q6T3F1	288.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1463078_20	411471.SUBVAR_04646	184.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1463078_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1463078_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1463078_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1463078_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1463078_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_21	phrog_1029	205.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1463078_21	411471.SUBVAR_05833	233.0	0	N/A	N/A
structural_annotation	UHGV-1463078_21	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_22	phrog_997	111.9	4.2e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463078_22	UniRef90_A0A2Z3KP46	76.3	0.00000000000000305	Replication terminator protein	N/A
eggNOG-mapper	UHGV-1463078_22	411471.SUBVAR_05832	157.0	0	N/A	N/A
PHROG	UHGV-1463078_24	phrog_7566	75.1	6.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1463078_24	411471.SUBVAR_05830	117.0	7.18e-33	N/A	N/A
COG	UHGV-1463078_25	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1463078_25	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_26	phrog_72	52.6	0.0000000000000073	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1463078_26	411471.SUBVAR_05829	205.0	0	N/A	N/A
Pfam	UHGV-1463078_26	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1463078_26	PF05772,NF007281	N/A	N/A	N/A	N/A
COG	UHGV-1463078_27	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1463078_27	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1463078_28	phrog_10280	52.5	0.0000000000000049	N/A	unknown function
eggNOG-mapper	UHGV-1463078_28	742738.HMPREF9460_02068	62.8	0.00000000956	N/A	N/A
eggNOG-mapper	UHGV-1463078_31	517418.Ctha_0322	71.6	0.000000000000309	N/A	N/A
structural_annotation	UHGV-1463078_31	PF18186,NF033632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1463078_32	UniRef90_A0A1Y3WR65	90.5	1.24e-22	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1463078_32	1111454.HMPREF1250_1029	65.1	0.000000000000272	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1463078_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1463078_32	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1463078_33	K01356	144.0	1.60028e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1463078_33	phrog_4	131.8	6e-39	transcriptional repressor	transcription regulation
UniRef90	UHGV-1463078_33	UniRef90_A0A1Q6T3E1	306.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1463078_33	411483.FAEPRAA2165_03041	164.0	0	N/A	N/A
PADLOC	UHGV-1463078_33	retron_type_VI_hth_cluster2_1	45.7	0.0000000000013	N/A	Retron
Pfam	UHGV-1463078_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1463078_33	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1463078_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1463078_33	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1463078_34	1114972.AUAW01000005_gene253	54.3	0.00000014	Short C-terminal domain	N/A
Pfam	UHGV-1463078_34	PF14472	N/A	N/A	N/A	DUF4429
KOfam	UHGV-1463078_35	K14059	132.7	4.7e-39	int; integrase	N/A
PHROG	UHGV-1463078_35	phrog_1	149.8	2.24208e-44	integrase	integration and excision
UniRef90	UHGV-1463078_35	UniRef90_A0A1Q6T3G6	651.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1463078_35	1507.HMPREF0262_00307	218.0	0	Phage integrase family	N/A
Pfam	UHGV-1463078_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1463078_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1463078_35	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A