UHGV-1463422 (vOTU-098591)

Viral Genome: UHGV-1463422

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1463422
vOTU ID	vOTU-098591
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0173405
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.28 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	2
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9739
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.83
Jumbo phage	No

Genome content
Genome length (bp)	23,684
GC content	49.03%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	87%
Average CDS length (bps)	456.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1463422_2	phrog_72	65.1	7.4e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463422_2	UniRef90_UPI001F3F3E5C	190.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1463422_2	445972.ANACOL_01825	138.0	3.49e-39	N/A	N/A
structural_annotation	UHGV-1463422_2	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_3	phrog_155	143.5	1.3999e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463422_3	UniRef90_UPI001C126E67	229.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1463422_3	97138.C820_00777	167.0	0	ERF superfamily	N/A
Pfam	UHGV-1463422_3	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1463422_3	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_5	phrog_5070	171.6	0	N/A	unknown function
UniRef90	UHGV-1463422_5	UniRef90_B0PAM0	119.0	4.41e-30	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-1463422_5	768710.DesyoDRAFT_1067	125.0	1.05e-33	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1463422_5	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1463422_5	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1463422_5	MF_01691,NF040481	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1463422_6	PF13560	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_8	phrog_1305	124.5	5.2e-37	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1463422_8	UniRef90_A0A1C6D5C7	468.0	0	N/A	N/A
eggNOG-mapper	UHGV-1463422_8	742738.HMPREF9460_03848	223.0	0	N/A	N/A
Pfam	UHGV-1463422_8	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-1463422_8	PF13643	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_9	phrog_14088	45.6	0.0000000000007	N/A	unknown function
UniRef90	UHGV-1463422_9	UniRef90_A0A3R6M7R7	68.6	0.0000000000000331	Carboxypeptidase	N/A
eggNOG-mapper	UHGV-1463422_9	626523.GCWU000342_01045	60.1	0.0000000000129	N/A	N/A
PHROG	UHGV-1463422_15	phrog_3292	57.3	2.8e-16	N/A	unknown function
UniRef90	UHGV-1463422_15	UniRef90_A0A1C6B901	134.0	7.43001e-40	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-1463422_15	926692.AZYG01000059_gene89	80.5	2.19e-19	KTSC domain	N/A
Pfam	UHGV-1463422_15	PF13619	N/A	N/A	KTSC domain	KTSC
COG	UHGV-1463422_15	COG0433	N/A	N/A	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	N/A
structural_annotation	UHGV-1463422_15	PF13619	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_16	phrog_5765	63.0	2.9e-18	N/A	unknown function
UniRef90	UHGV-1463422_16	UniRef90_UPI001D0EF465	64.3	0.00000000000128	BC1881 family protein	N/A
eggNOG-mapper	UHGV-1463422_16	1095750.HMPREF9970_1008	63.5	0.000000000000306	N/A	N/A
NCBIFam	UHGV-1463422_16	NF033495.1	N/A	N/A	BC1881 family protein	N/A
KOfam	UHGV-1463422_17	K18831	42.1	0.000000000015	higA; HTH-type transcriptional regulator / antitoxin HigA	N/A
UniRef90	UHGV-1463422_17	UniRef90_A0A1C6B995	136.0	5.60001e-41	Plasmid maintenance system antidote protein	N/A
eggNOG-mapper	UHGV-1463422_17	411461.DORFOR_00030	51.6	0.0000000565	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1463422_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1463422_17	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1463422_19	K22300	50.8	0.000000000000035	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1463422_19	UniRef90_A0A1C6J7L0	224.0	0	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1463422_19	411471.SUBVAR_05818	146.0	6.16571e-44	sequence-specific DNA binding	N/A
Pfam	UHGV-1463422_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1463422_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1463422_19	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_21	phrog_2700	84.8	1.2e-24	N/A	unknown function
UniRef90	UHGV-1463422_21	UniRef90_UPI0011244AA1	149.0	1.98003e-41	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-1463422_21	1410653.JHVC01000013_gene3717	124.0	4.39e-32	Bacterial PH domain	N/A
Pfam	UHGV-1463422_21	PF14470	N/A	N/A	Bacterial PH domain	bPH_3
Pfam	UHGV-1463422_21	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1463422_21	PF14470,NF033891,COG3402	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_22	phrog_33872	51.9	6.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1463422_22	693746.OBV_19740	48.9	0.00000772	N/A	N/A
PHROG	UHGV-1463422_23	phrog_2657	160.7	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1463422_23	UniRef90_A0A1C6B9J9	534.0	0	KilA-N domain	N/A
eggNOG-mapper	UHGV-1463422_23	428125.CLOLEP_01836	427.0	0	COG NOG08824 non supervised orthologous group	N/A
Pfam	UHGV-1463422_23	PF04383	N/A	N/A	KilA-N domain	KilA-N
structural_annotation	UHGV-1463422_23	PF04383,NF033622,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-1463422_24	K14059	210.3	0	int; integrase	N/A
PHROG	UHGV-1463422_24	phrog_1	204.9	0	integrase	integration and excision
UniRef90	UHGV-1463422_24	UniRef90_A0A1C5N3H1	590.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1463422_24	1408437.JNJN01000039_gene380	203.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1463422_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1463422_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1463422_24	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1463422_25	1378168.N510_03079	119.0	2.2e-29	N/A	N/A
eggNOG-mapper	UHGV-1463422_26	1408437.JNJN01000043_gene802	188.0	0	N/A	N/A
PHROG	UHGV-1463422_27	phrog_16490	263.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1463422_27	1408437.JNJN01000043_gene803	301.0	0	N/A	N/A
eggNOG-mapper	UHGV-1463422_29	445972.ANACOL_01878	61.2	0.00000000133	N/A	N/A
structural_annotation	UHGV-1463422_31	PF16509,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1463422_32	K01447	67.7	2.1e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1463422_32	phrog_15001	177.3	0	endolysin	lysis
UniRef90	UHGV-1463422_32	UniRef90_A0A8J6M7Y7	539.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1463422_32	1378168.N510_01539	335.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1463422_32	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1463422_32	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1463422_32	PF01510,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_35	phrog_1129	68.3	7.5e-20	holin	lysis
UniRef90	UHGV-1463422_35	UniRef90_A0A416QZD1	125.0	5.03e-36	Enolase	N/A
eggNOG-mapper	UHGV-1463422_35	1007096.BAGW01000036_gene2663	124.0	4.22e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1463422_35	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1463422_35	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_36	phrog_937	54.0	0.0000000000000029	hemolysin	other
eggNOG-mapper	UHGV-1463422_36	428125.CLOLEP_00170	60.8	0.000000000231	N/A	N/A
PHROG	UHGV-1463422_40	phrog_13589	75.2	3.40516e-43	N/A	unknown function
eggNOG-mapper	UHGV-1463422_40	411471.SUBVAR_06929	330.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1463422_40	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-1463422_41	1297617.JPJD01000099_gene2171	105.0	1.46e-23	Collagen triple helix repeat protein	N/A
COG	UHGV-1463422_41	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-1463422_41	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_43	phrog_32744	679.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1463422_43	1120998.AUFC01000030_gene2247	231.0	0	N/A	N/A
structural_annotation	UHGV-1463422_43	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_44	phrog_1194	73.1	3.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1463422_44	1120998.AUFC01000030_gene2246	125.0	8.09e-34	N/A	N/A
structural_annotation	UHGV-1463422_44	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1463422_45	phrog_1535	123.3	5.395e-43	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1463422_45	1120998.AUFC01000030_gene2245	116.0	1.44e-25	phage tail tape measure protein	N/A
COG	UHGV-1463422_45	COG1511	N/A	N/A	N/A	N/A