UHGV-1465658 (vOTU-029258)

Viral Genome: UHGV-1465658

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1465658
vOTU ID	vOTU-029258
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0175633
Associated BioSample	SAMEA1906455
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.52 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.41
Jumbo phage	No

Genome content
Genome length (bp)	24,011
GC content	41.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	85%
Average CDS length (bps)	454.67
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1465658_1	phrog_1204	127.1	1.2e-37	tail protein	tail
UniRef90	UHGV-1465658_1	UniRef90_A0A084A917	80.1	2.28e-17	Putative phage tail fiber (Fragment)	N/A
eggNOG-mapper	UHGV-1465658_1	1385385.U6E979_9CAUD	193.0	0	peptidoglycan catabolic process	N/A
PHROG	UHGV-1465658_2	phrog_441	70.5	2.7e-20	tail assembly chaperone	tail
UniRef90	UHGV-1465658_2	UniRef90_O34070	164.0	0	ORF39	N/A
PHROG	UHGV-1465658_3	phrog_183	94.3	1.3e-27	tail chaperone protein	tail
UniRef90	UHGV-1465658_3	UniRef90_UPI0015D30B22	223.0	0	tail assembly chaperone	N/A
eggNOG-mapper	UHGV-1465658_3	682370.C9W9I6_9CAUD	209.0	0	Pfam:Phage_TAC_12	N/A
Pfam	UHGV-1465658_3	PF12363	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
structural_annotation	UHGV-1465658_3	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_4	phrog_238	170.1	0	major tail protein	tail
UniRef90	UHGV-1465658_4	UniRef90_A0A2X3UI79	295.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1465658_4	1385385.U6E9D4_9CAUD	283.0	0	Phage major tail protein 2	N/A
Pfam	UHGV-1465658_4	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-1465658_4	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
structural_annotation	UHGV-1465658_4	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_5	phrog_176	106.4	2.1e-31	tail terminator	connector
UniRef90	UHGV-1465658_5	UniRef90_A0A2X3U795	230.0	0	N/A	N/A
eggNOG-mapper	UHGV-1465658_5	682370.C9W9I4_9CAUD	241.0	0	N/A	N/A
structural_annotation	UHGV-1465658_5	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_6	phrog_5	70.2	4.4e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-1465658_6	UniRef90_UPI0015D3C8F3	197.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1465658_6	682370.C9W9I3_9CAUD	171.0	0	exonuclease activity	N/A
NCBIFam	UHGV-1465658_6	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1465658_6	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_7	phrog_348	89.2	3.8e-26	minor head protein	head and packaging
UniRef90	UHGV-1465658_7	UniRef90_O34065	176.0	0	ORF34	N/A
eggNOG-mapper	UHGV-1465658_7	1605.Lani381_0863	51.6	0.000000446	N/A	N/A
structural_annotation	UHGV-1465658_7	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_8	phrog_132	93.1	2e-27	head-tail adaptor	connector
UniRef90	UHGV-1465658_8	UniRef90_O34064	210.0	0	ORF33	N/A
eggNOG-mapper	UHGV-1465658_8	1123302.KB904182_gene68	155.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1465658_8	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1465658_8	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_9	phrog_5279	84.3	7.7e-25	N/A	unknown function
UniRef90	UHGV-1465658_9	UniRef90_O34063	89.4	1.59e-22	ORF32	N/A
PHROG	UHGV-1465658_10	phrog_29	262.2	0	major head protein	head and packaging
UniRef90	UHGV-1465658_10	UniRef90_O34062	627.0	0	ORF31	N/A
eggNOG-mapper	UHGV-1465658_10	85154.O34062_BPO12	627.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1465658_10	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1465658_10	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_11	phrog_909	93.4	1.7e-27	major head protein	head and packaging
UniRef90	UHGV-1465658_11	UniRef90_A0A2X3UEG8	210.0	0	Phage structural protein	N/A
structural_annotation	UHGV-1465658_11	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_12	phrog_172	98.7	7.2e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1465658_12	UniRef90_O34060	296.0	0	ORF29	N/A
eggNOG-mapper	UHGV-1465658_12	1123315.AUIP01000003_gene242	116.0	5.64e-30	N/A	N/A
Pfam	UHGV-1465658_12	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1465658_12	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_13	phrog_115	258.9	0	minor head protein	head and packaging
UniRef90	UHGV-1465658_13	UniRef90_A0A2H4J030	558.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1465658_13	1385385.U6E9F1_9CAUD	414.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1465658_13	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1465658_13	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
structural_annotation	UHGV-1465658_13	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_14	phrog_64	452.4	0	portal protein	head and packaging
UniRef90	UHGV-1465658_14	UniRef90_C9W9H5	867.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1465658_14	682370.C9W9H5_9CAUD	867.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1465658_14	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1465658_14	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1465658_14	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1465658_15	K06909	113.8	1.7e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1465658_15	phrog_5653	197.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1465658_15	UniRef90_U6E9B3	805.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1465658_15	85154.O34057_BPO12	815.0	0	Terminase-like family	N/A
Pfam	UHGV-1465658_15	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1465658_15	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1465658_15	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-1465658_15	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1465658_16	UniRef90_UPI001BDE0009	190.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1465658_16	1054460.SPPN_00130	148.0	2.94273e-44	DNA packaging	N/A
COG	UHGV-1465658_16	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-1465658_17	phrog_248	145.1	3.19496e-43	transcriptional activator	transcription regulation
UniRef90	UHGV-1465658_17	UniRef90_O34055	254.0	0	Putative autolysin regulatory protein ArpU	N/A
eggNOG-mapper	UHGV-1465658_17	173707.Q938L8_9CAUD	136.0	2.07e-39	N/A	N/A
NCBIFam	UHGV-1465658_17	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-1465658_17	PF05263,MF_00674,TIGR01637,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_18	phrog_1814	298.7	0	N/A	unknown function
UniRef90	UHGV-1465658_18	UniRef90_UPI0019194F7A	424.0	0	N/A	N/A
Pfam	UHGV-1465658_18	PF07067	N/A	N/A	N/A	DUF1340
structural_annotation	UHGV-1465658_18	PF07067	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_19	phrog_884	135.2	1.4e-40	N/A	unknown function
UniRef90	UHGV-1465658_19	UniRef90_A0A1V0H7R5	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-1465658_19	365659.smi_0433	54.7	0.0000000189	N/A	N/A
Pfam	UHGV-1465658_19	PF07116	N/A	N/A	N/A	DUF1372
structural_annotation	UHGV-1465658_19	PF07116	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_20	phrog_1994	219.7	0	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1465658_20	UniRef90_T0TA08	200.0	0	Phage DNA-binding protein	N/A
eggNOG-mapper	UHGV-1465658_20	306323.Q56S64_9CAUD	198.0	0	sequence-specific DNA binding	N/A
structural_annotation	UHGV-1465658_20	PF12643,MF_01020,NF001613,COG0140	N/A	N/A	N/A	N/A
UniRef90	UHGV-1465658_21	UniRef90_UPI00076AE288	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-1465658_21	365659.smi_0429	54.3	0.0000000459	N/A	N/A
UniRef90	UHGV-1465658_22	UniRef90_UPI0019144FD6	144.0	4.90454e-44	N/A	N/A
Pfam	UHGV-1465658_22	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-1465658_22	COG1051	N/A	N/A	ADP-ribose pyrophosphatase YjhB, NUDIX family	N/A
structural_annotation	UHGV-1465658_22	PF20549,NF000331,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_23	phrog_5415	61.0	1.6e-17	N/A	unknown function
PHROG	UHGV-1465658_24	phrog_1489	87.8	7.4e-26	N/A	unknown function
UniRef90	UHGV-1465658_24	UniRef90_Q9MCL8	65.5	0.000000000000408	ORF12	N/A
structural_annotation	UHGV-1465658_24	PF13773	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_25	phrog_14577	83.1	2.2e-24	N/A	unknown function
structural_annotation	UHGV-1465658_26	PF10750,MF_01054,NF001220,COG5515	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_27	phrog_1982	145.1	8.40779e-44	N/A	unknown function
UniRef90	UHGV-1465658_27	UniRef90_Q9XJU9	125.0	8.09e-36	Orf89 gp	N/A
structural_annotation	UHGV-1465658_27	PF01381,NF040507,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-1465658_28	K01160	57.9	3.4e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1465658_28	phrog_34	72.4	7.7e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1465658_28	UniRef90_A0A191KC42	242.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1465658_28	120574.Q94M60_9CAUD	143.0	1.90016e-42	magnesium ion binding	N/A
structural_annotation	UHGV-1465658_28	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1465658_29	K03111	161.1	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1465658_29	phrog_44	172.3	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1465658_29	UniRef90_A0A1V0H7S2	302.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1465658_29	264199.stu1753	246.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1465658_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1465658_29	NF005580.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1465658_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1465658_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1465658_29	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_30	phrog_674	272.9	0	N/A	unknown function
UniRef90	UHGV-1465658_30	UniRef90_A0A1V0H7T8	515.0	0	N/A	N/A
eggNOG-mapper	UHGV-1465658_30	1239381.K4JU67_9CAUD	209.0	0	N/A	N/A
Pfam	UHGV-1465658_30	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1465658_30	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_31	phrog_25348	156.0	0	N/A	unknown function
UniRef90	UHGV-1465658_31	UniRef90_A0A2C5WGU6	440.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1465658_31	1277892.M1IEW6_9CAUD	152.0	5.8294e-43	ERF superfamily	N/A
Pfam	UHGV-1465658_31	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1465658_31	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_32	phrog_2553	59.1	5.8e-17	N/A	unknown function
UniRef90	UHGV-1465658_32	UniRef90_UPI00118251C3	58.2	0.000000000282	2-hydroxyacyl-CoA dehydratase	N/A
PHROG	UHGV-1465658_33	phrog_2486	59.5	6.3e-17	N/A	unknown function
UniRef90	UHGV-1465658_34	UniRef90_UPI00076A60D5	923.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1465658_34	435842.HMPREF0848_00198	305.0	0	Pilin isopeptide linkage domain protein	N/A
Pfam	UHGV-1465658_34	PF17961	N/A	N/A	Bacterial Ig domain	Big_8
Pfam	UHGV-1465658_34	PF05737	N/A	N/A	Collagen binding domain	Collagen_bind
NCBIFam	UHGV-1465658_34	TIGR01167.1	N/A	N/A	LPXTG cell wall anchor domain-containing protein	N/A
COG	UHGV-1465658_34	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
structural_annotation	UHGV-1465658_34	PF05737,PF17961,NF000535	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_35	phrog_1022	54.0	0.0000000000000024	N/A	unknown function
PHROG	UHGV-1465658_36	phrog_2164	94.6	8.6e-28	N/A	unknown function
UniRef90	UHGV-1465658_36	UniRef90_Q8YJX5	58.2	0.0000000474	Alr8555 protein	N/A
eggNOG-mapper	UHGV-1465658_36	1260356.D920_00267	74.3	0.00000000000000375	N/A	N/A
PHROG	UHGV-1465658_37	phrog_904	116.0	1.2e-34	excisionase	integration and excision
UniRef90	UHGV-1465658_37	UniRef90_A0A0E2Q2P3	172.0	0	Excisionase	N/A
eggNOG-mapper	UHGV-1465658_37	1069533.Sinf_0769	119.0	2.79e-34	N/A	N/A
structural_annotation	UHGV-1465658_37	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_38	phrog_2902	229.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-1465658_38	UniRef90_UPI0015841B83	255.0	0	ORF6C domain-containing protein	N/A
Pfam	UHGV-1465658_38	PF10552	N/A	N/A	ORF6C domain	ORF6C
structural_annotation	UHGV-1465658_38	PF10552	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_39	phrog_1733	339.8	0	N/A	unknown function
UniRef90	UHGV-1465658_39	UniRef90_UPI0012BC67B3	478.0	0	N/A	N/A
eggNOG-mapper	UHGV-1465658_39	646413.C5IUM1_9CAUD	457.0	0	N/A	N/A
Pfam	UHGV-1465658_39	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-1465658_39	PF11300,NF038070	N/A	N/A	N/A	N/A
KOfam	UHGV-1465658_40	K07727	45.4	0.0000000000019	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-1465658_40	phrog_8	42.1	0.000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-1465658_40	UniRef90_UPI001583833E	109.0	4.06e-30	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1465658_40	585203.SMSK564_1314	59.3	0.0000000000348	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1465658_40	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1465658_40	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_41	phrog_14735	93.2	1.6e-27	N/A	unknown function
KOfam	UHGV-1465658_44	K07729	41.6	0.000000000025	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1465658_44	phrog_7950	50.8	0.000000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-1465658_44	UniRef90_A0A098APP1	136.0	1.3e-40	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1465658_44	1461246.X2KUC2_9VIRU	121.0	1.9e-35	protein disulfide oxidoreductase activity	N/A
PADLOC	UHGV-1465658_44	retron_type_VI_hth_cluster2_1	40.7	0.000000000072	N/A	Retron
Pfam	UHGV-1465658_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1465658_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1465658_45	phrog_1305	168.2	0	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1465658_45	UniRef90_A0A1L8Q6E9	426.0	0	N/A	N/A
eggNOG-mapper	UHGV-1465658_45	1123302.KB904182_gene105	243.0	0	N/A	N/A
Pfam	UHGV-1465658_45	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-1465658_45	PF13643	N/A	N/A	N/A	N/A