UHGV-1468030 (vOTU-171153)

Viral Genome: UHGV-1468030

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1468030
vOTU ID	vOTU-171153
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0233255
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9588
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.9
Jumbo phage	No

Genome content
Genome length (bp)	33,959
GC content	31.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	94%
Average CDS length (bps)	815.62
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1468030_1	K14059	237.6	0	int; integrase	N/A
PHROG	UHGV-1468030_1	phrog_1	240.6	0	integrase	integration and excision
UniRef90	UHGV-1468030_1	UniRef90_UPI0013A5F74A	634.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1468030_1	697284.ERIC2_c27190	195.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1468030_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1468030_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1468030_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1468030_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1468030_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1468030_4	phrog_4738	42.8	0.00000000000039	transcriptional repressor	transcription regulation
UniRef90	UHGV-1468030_4	UniRef90_UPI00111390DB	51.6	0.000000994	ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-1468030_4	457421.CBFG_02774	68.6	0.000000000000038	Transcriptional regulator	N/A
COG	UHGV-1468030_4	COG0864	N/A	N/A	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	N/A
PHROG	UHGV-1468030_5	phrog_38821	45.9	0.00000000000073	N/A	unknown function
UniRef90	UHGV-1468030_8	UniRef90_UPI0015F98702	80.5	8.92e-18	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1468030_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1468030_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1468030_9	K19223	43.1	0.0000000000052	lytF, cwlE; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]	N/A
UniRef90	UHGV-1468030_9	UniRef90_H3K5P5	205.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-1468030_9	1120973.AQXL01000134_gene1636	50.4	0.00000105	LysM domain	N/A
Pfam	UHGV-1468030_9	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1468030_9	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1468030_9	PF01476,MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1468030_12	phrog_434	348.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468030_12	UniRef90_H3K5P2	613.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1468030_12	706434.HMPREF9429_00770	341.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1468030_12	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1468030_12	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1468030_12	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1468030_12	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1468030_14	K07455	176.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1468030_14	phrog_148	174.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468030_14	UniRef90_H3K5P1	579.0	0	Phage RecT family recombinase	N/A
eggNOG-mapper	UHGV-1468030_14	1443125.Z962_05750	202.0	0	RecT family	N/A
Pfam	UHGV-1468030_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1468030_14	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1468030_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1468030_14	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1468030_15	K22222	109.0	2.9e-34	cetZ; tubulin-like protein CetZ	N/A
PHROG	UHGV-1468030_15	phrog_17961	99.9	2.8e-29	N/A	unknown function
UniRef90	UHGV-1468030_15	UniRef90_H3K5N9	645.0	0	Tubulin domain-containing protein	N/A
eggNOG-mapper	UHGV-1468030_15	1235793.C809_02636	198.0	0	PFAM Tubulin FtsZ	N/A
Pfam	UHGV-1468030_15	PF00091	N/A	N/A	Tubulin/FtsZ family, GTPase domain	Tubulin
COG	UHGV-1468030_15	COG0206	N/A	N/A	Cell division GTPase FtsZ	N/A
structural_annotation	UHGV-1468030_15	PF00091,PF21011,MF_01946,TIGR00065,COG0206	N/A	N/A	N/A	N/A
PHROG	UHGV-1468030_16	phrog_270	101.4	1.1e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468030_16	UniRef90_UPI0017469951	152.0	2.8e-39	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1468030_16	1397699.JNIS01000001_gene2447	110.0	1.53e-25	Conserved phage C-terminus (Phg_2220_C)	N/A
PHROG	UHGV-1468030_17	phrog_9804	45.8	0.00000000000084	N/A	unknown function
PHROG	UHGV-1468030_19	phrog_2776	61.7	8.6e-18	N/A	unknown function
UniRef90	UHGV-1468030_19	UniRef90_A0A2S7ZCT0	126.0	2.65e-34	DNA repair protein MmcB-related protein	N/A
structural_annotation	UHGV-1468030_19	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-1468030_23	phrog_8684	51.6	2.8e-16	N/A	unknown function
UniRef90	UHGV-1468030_23	UniRef90_A0A412CGN5	166.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1468030_23	411473.RUMCAL_00280	78.6	8.95e-17	YopX protein	N/A
Pfam	UHGV-1468030_23	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1468030_23	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1468030_24	phrog_190	130.6	8.7e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468030_24	UniRef90_UPI001431BAE0	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-1468030_24	40522.A8ASP7_BPA50	113.0	2.49e-30	N/A	N/A
Pfam	UHGV-1468030_24	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1468030_24	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1468030_25	phrog_9298	292.6	0	radical SAM domain protein	other
UniRef90	UHGV-1468030_25	UniRef90_A0A0X8KAQ1	332.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-1468030_25	585503.HMPREF7545_1721	327.0	0	N/A	N/A
COG	UHGV-1468030_25	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1468030_25	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
KOfam	UHGV-1468030_27	K06223	203.6	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1468030_27	phrog_56	180.4	0	DNA methyltransferase	other
UniRef90	UHGV-1468030_27	UniRef90_UPI00142FB366	456.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-1468030_27	1460634.JCM19037_3683	229.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1468030_27	MTase_II_00030	254.6	0	Type II methyltransferase	RM
Pfam	UHGV-1468030_27	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1468030_27	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1468030_27	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
UniRef90	UHGV-1468030_31	UniRef90_UPI001D0851CD	101.0	5.43e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1468030_31	1089548.KI783301_gene2628	62.8	0.0000000000233	N/A	N/A
Pfam	UHGV-1468030_32	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
KOfam	UHGV-1468030_34	K03111	160.4	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1468030_34	phrog_44	157.2	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468030_34	UniRef90_H3K5M5	262.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1468030_34	1122217.KB899575_gene2011	202.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1468030_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1468030_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1468030_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1468030_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1468030_34	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1468030_36	K08309	81.9	1.3e-23	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-1468030_36	phrog_10691	1083.5	0	N/A	unknown function
UniRef90	UHGV-1468030_36	UniRef90_H3K5M1	6799.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1468030_36	1232428.CAVO010000067_gene414	1322.0	0	Type III restriction enzyme, res subunit	N/A
Pfam	UHGV-1468030_36	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-1468030_36	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1468030_36	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1468030_36	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
UniRef90	UHGV-1468030_38	UniRef90_UPI00047F33D6	108.0	2.62e-22	Hint domain-containing protein	N/A
eggNOG-mapper	UHGV-1468030_38	1485543.JMME01000020_gene776	108.0	4.24e-23	N/A	N/A