UHGV-1471722 (vOTU-070533)

Viral Genome: UHGV-1471722

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1471722
vOTU ID	vOTU-070533
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0276429
Associated BioSample	SAMEA4545425
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.17 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.33
Jumbo phage	No

Genome content
Genome length (bp)	41,513
GC content	59.59%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	93%
Average CDS length (bps)	702.76
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1471722_1	phrog_10993	85.5	5.5e-25	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-1471722_1	742738.HMPREF9460_02534	85.1	5.06e-16	N/A	N/A
Pfam	UHGV-1471722_1	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1471722_1	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1471722_3	1519439.JPJG01000060_gene1895	82.4	0.00000000000000182	N/A	N/A
structural_annotation	UHGV-1471722_3	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_4	phrog_937	41.4	0.000000000021	hemolysin	other
PHROG	UHGV-1471722_5	phrog_443	60.0	7e-17	holin	lysis
UniRef90	UHGV-1471722_5	UniRef90_A0A4R1QPE5	94.0	5.32e-24	Phage r1t holin	N/A
eggNOG-mapper	UHGV-1471722_5	1469948.JPNB01000002_gene3855	94.0	8.92e-25	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1471722_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1471722_5	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1471722_6	K01447	90.2	3.5e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1471722_6	phrog_670	116.0	4.7e-34	endolysin	lysis
UniRef90	UHGV-1471722_6	UniRef90_R8W9R7	117.0	1.19e-28	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1471722_6	1203606.HMPREF1526_00589	117.0	1.99e-29	Ami_2	N/A
Pfam	UHGV-1471722_6	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1471722_6	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1471722_6	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1471722_7	PF16509,MF_00245,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_9	phrog_16490	55.5	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1471722_9	641112.ACOK01000103_gene525	55.5	0.000000804	N/A	N/A
structural_annotation	UHGV-1471722_10	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1471722_11	UniRef90_A0A7M1RTM1	77.8	0.00000000000000825	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1471722_11	1378168.N510_03079	69.3	0.00000000000547	N/A	N/A
KOfam	UHGV-1471722_12	K14059	208.3	0	int; integrase	N/A
PHROG	UHGV-1471722_12	phrog_1	198.9	0	integrase	integration and excision
UniRef90	UHGV-1471722_12	UniRef90_A0A212JT52	253.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-1471722_12	1507.HMPREF0262_00307	199.0	0	Phage integrase family	N/A
Pfam	UHGV-1471722_12	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1471722_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1471722_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1471722_12	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1471722_17	K18830	55.8	0.0000000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1471722_17	phrog_8	46.8	0.00000000000062	transcriptional regulator	transcription regulation
UniRef90	UHGV-1471722_17	UniRef90_A0A350VVA2	94.0	2.18e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1471722_17	903814.ELI_1263	73.2	0.00000000000000591	Helix-turn-helix domain	N/A
Pfam	UHGV-1471722_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1471722_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1471722_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1471722_20	PF10548	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_21	phrog_1468	57.3	1.1e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-1471722_21	UniRef90_A0A1Y3RFS1	58.9	0.000000000604	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-1471722_22	NF041247	N/A	N/A	N/A	N/A
KOfam	UHGV-1471722_27	K00390	99.3	3.9e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1471722_27	phrog_424	119.7	2.3e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1471722_27	UniRef90_UPI001D087498	412.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1471722_27	1408437.JNJN01000032_gene2312	330.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-1471722_27	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1471722_27	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1471722_27	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1471722_28	UniRef90_A0A845MZZ9	99.4	2.49e-24	N/A	N/A
Pfam	UHGV-1471722_28	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1471722_28	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_29	phrog_3136	136.5	8.90007e-41	N/A	unknown function
UniRef90	UHGV-1471722_29	UniRef90_UPI001CBCD733	104.0	5.39e-25	ASCH domain-containing protein	N/A
COG	UHGV-1471722_29	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1471722_29	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_30	phrog_38832	59.7	3.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1471722_30	445972.ANACOL_00165	57.4	0.000000157	N/A	N/A
PHROG	UHGV-1471722_33	phrog_190	98.5	6.9e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1471722_33	UniRef90_UPI0006C2AC63	122.0	8.06e-33	N/A	N/A
eggNOG-mapper	UHGV-1471722_33	693746.OBV_25250	117.0	2.64e-31	N/A	N/A
Pfam	UHGV-1471722_33	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1471722_33	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_35	phrog_374	57.5	2.8e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1471722_35	411467.BACCAP_02633	65.9	0.0000000000261	N/A	N/A
PHROG	UHGV-1471722_37	phrog_21498	300.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1471722_37	78346.BRUM_0376	258.0	0	DNA binding	N/A
COG	UHGV-1471722_37	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1471722_37	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_38	phrog_3584	113.0	2.4e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1471722_38	537013.CLOSTMETH_02141	73.2	0.000000000000486	N/A	N/A
structural_annotation	UHGV-1471722_38	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_39	phrog_606	69.4	5.5e-20	terminase small subunit	head and packaging
UniRef90	UHGV-1471722_39	UniRef90_UPI001F487344	128.0	2.41e-35	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1471722_39	397290.C810_05185	129.0	7e-36	DNA-packaging protein gp3	N/A
Pfam	UHGV-1471722_39	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1471722_39	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1471722_40	K06909	150.6	1.26117e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1471722_40	phrog_979	136.6	9.69979e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1471722_40	UniRef90_A0A810Q5R0	646.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1471722_40	1410650.JHWL01000003_gene2834	625.0	0	N/A	N/A
Pfam	UHGV-1471722_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1471722_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1471722_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_41	phrog_511	241.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1471722_41	1410650.JHWL01000003_gene2827	325.0	0	N/A	N/A
structural_annotation	UHGV-1471722_41	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1471722_42	537007.BLAHAN_05255	63.5	0.0000000588	N/A	N/A
PHROG	UHGV-1471722_43	phrog_37329	52.4	0.0000000000000062	N/A	unknown function
Pfam	UHGV-1471722_43	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-1471722_43	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-1471722_43	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_45	phrog_156	299.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1471722_45	1410650.JHWL01000003_gene2833	538.0	0	N/A	N/A
structural_annotation	UHGV-1471722_45	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_46	phrog_13908	148.2	5.04467e-44	N/A	unknown function
eggNOG-mapper	UHGV-1471722_46	1410650.JHWL01000003_gene2831	105.0	9.67e-24	N/A	N/A
PHROG	UHGV-1471722_47	phrog_1357	215.1	0	major head protein	head and packaging
UniRef90	UHGV-1471722_47	UniRef90_A0A2V2CFL5	400.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1471722_47	1410650.JHWL01000003_gene2830	276.0	0	N/A	N/A
Pfam	UHGV-1471722_47	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1471722_47	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1471722_47	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1471722_49	phrog_12105	121.9	3.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-1471722_49	1226322.HMPREF1545_03850	59.7	0.00000000112	N/A	N/A
UniRef90	UHGV-1471722_50	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1471722_50	1410650.JHWL01000003_gene2815	137.0	7.19e-34	N/A	N/A
PHROG	UHGV-1471722_51	phrog_22978	125.3	2.20004e-42	N/A	unknown function
eggNOG-mapper	UHGV-1471722_51	1408437.JNJN01000039_gene389	491.0	0	heme binding	N/A
COG	UHGV-1471722_51	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-1471722_52	phrog_33872	55.8	9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1471722_52	693746.OBV_19740	60.5	0.0000000000977	N/A	N/A
structural_annotation	UHGV-1471722_53	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-1471722_54	K16628	190.0	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1471722_54	phrog_819	138.1	0	tail protein	tail
UniRef90	UHGV-1471722_54	UniRef90_UPI00068BE71D	84.0	0.000000000000393	collagen-like protein	N/A
eggNOG-mapper	UHGV-1471722_54	1232443.BAIA02000078_gene14	84.0	0.0000000000000694	nuclear chromosome segregation	N/A
Pfam	UHGV-1471722_54	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1471722_54	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1471722_55	phrog_10993	42.7	0.00000000000098	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-1471722_55	742738.HMPREF9460_02534	62.0	0.0000000349	N/A	N/A
Pfam	UHGV-1471722_55	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1471722_55	PF19789	N/A	N/A	N/A	N/A