UHGV-1472267 (vOTU-063093)

Viral Genome: UHGV-1472267

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1472267
vOTU ID	vOTU-063093
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0281662
Associated BioSample	SAMN06328492
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.77 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.35
Jumbo phage	No

Genome content
Genome length (bp)	42,573
GC content	55.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	93%
Average CDS length (bps)	650.46
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1472267_1	693746.OBV_23800	236.0	0	N/A	N/A
UniRef90	UHGV-1472267_3	UniRef90_A0A8D9UGT1	134.0	2.98e-38	Sigma C capsid protein	N/A
PHROG	UHGV-1472267_4	phrog_511	221.6	0	internal virion protein	head and packaging
UniRef90	UHGV-1472267_4	UniRef90_A0A8D9UH72	865.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1472267_4	1226322.HMPREF1545_00785	323.0	0	N/A	N/A
structural_annotation	UHGV-1472267_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_5	phrog_12105	84.3	7.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1472267_5	1519439.JPJG01000060_gene1891	63.2	0.0000000000354	N/A	N/A
PHROG	UHGV-1472267_6	phrog_435	55.2	0.0000000000000014	endolysin	lysis
UniRef90	UHGV-1472267_6	UniRef90_A0A8D9PDS4	454.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-1472267_6	1226322.HMPREF1545_01953	90.5	4.9e-19	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1472267_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1472267_6	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_7	phrog_1129	79.8	2e-23	holin	lysis
UniRef90	UHGV-1472267_7	UniRef90_A0A8D9PDD4	182.0	0	Holin	N/A
eggNOG-mapper	UHGV-1472267_7	1226322.HMPREF1545_00069	113.0	1.51e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1472267_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1472267_7	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_8	phrog_4105	104.7	4.8e-31	N/A	unknown function
UniRef90	UHGV-1472267_8	UniRef90_A0A8D9UHA9	200.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-1472267_8	411460.RUMTOR_01326	142.0	8.18358e-43	N/A	N/A
PHROG	UHGV-1472267_9	phrog_35419	43.7	0.0000000000043	tail fiber protein	tail
eggNOG-mapper	UHGV-1472267_9	1235793.C809_03302	66.2	0.0000000248	N/A	N/A
Pfam	UHGV-1472267_9	PF00404	N/A	N/A	Dockerin type I domain	Dockerin_1
PHROG	UHGV-1472267_10	phrog_15239	84.2	6.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1472267_10	1449126.JQKL01000003_gene1694	52.4	0.0000013	N/A	N/A
PHROG	UHGV-1472267_11	phrog_1357	276.1	0	major head protein	head and packaging
UniRef90	UHGV-1472267_11	UniRef90_A0A8D9UH64	621.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1472267_11	1449126.JQKL01000003_gene1695	400.0	0	N/A	N/A
Pfam	UHGV-1472267_11	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1472267_11	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1472267_11	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_12	phrog_13908	309.6	0	N/A	unknown function
UniRef90	UHGV-1472267_12	UniRef90_A0A174CZ20	113.0	7.05e-25	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-1472267_12	1410650.JHWL01000003_gene2831	119.0	9.72e-29	N/A	N/A
UniRef90	UHGV-1472267_13	UniRef90_A0A8D9PDR6	183.0	0	YsxB-like protein	N/A
Pfam	UHGV-1472267_13	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1472267_13	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_14	phrog_156	337.3	0	portal protein	head and packaging
UniRef90	UHGV-1472267_14	UniRef90_A0A8D9UH10	1141.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1472267_14	748224.HMPREF9436_01396	533.0	0	N/A	N/A
structural_annotation	UHGV-1472267_14	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1472267_15	K06909	102.0	7.4e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1472267_15	phrog_979	152.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1472267_15	UniRef90_A0A8D9PDR5	896.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1472267_15	657322.FPR_02290	564.0	0	Terminase-like family	N/A
Pfam	UHGV-1472267_15	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1472267_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1472267_15	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_16	phrog_606	88.1	8.5e-26	terminase small subunit	head and packaging
UniRef90	UHGV-1472267_16	UniRef90_UPI00195648BB	181.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1472267_16	445972.ANACOL_01838	150.0	1.54143e-44	DNA-packaging protein gp3	N/A
Pfam	UHGV-1472267_16	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1472267_16	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1472267_17	K22299	47.4	0.00000000000043	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1472267_17	phrog_8	64.7	1.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1472267_17	UniRef90_A0A8D9PDC4	152.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-1472267_17	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-1472267_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1472267_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1472267_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472267_18	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_20	phrog_38832	93.6	6.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-1472267_20	665956.HMPREF1032_00143	83.6	5.62e-18	N/A	N/A
PHROG	UHGV-1472267_22	phrog_111	140.4	9.39991e-42	DNA methyltransferase	other
UniRef90	UHGV-1472267_22	UniRef90_A0A1L5KS67	197.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-1472267_22	445972.ANACOL_03344	178.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-1472267_22	oMTase_00015	163.5	0	orphan methyltransferase	RM
Pfam	UHGV-1472267_22	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1472267_22	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_23	phrog_757	226.5	0	DNA methyltransferase	other
UniRef90	UHGV-1472267_23	UniRef90_UPI001A9B5584	233.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1472267_23	1235790.C805_00032	222.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1472267_23	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1472267_23	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472267_25	665956.HMPREF1032_00140	80.9	2.56e-17	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-1472267_25	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-1472267_26	phrog_7168	81.5	1.4e-25	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472267_26	UniRef90_UPI0018AC8137	152.0	1.38e-41	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1472267_26	682795.AciX8_1848	57.4	0.000000431	GIY-YIG type nucleases (URI domain)	N/A
Pfam	UHGV-1472267_26	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-1472267_26	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
Pfam	UHGV-1472267_26	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1472267_26	PF19835,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-1472267_27	K00390	53.9	3.5e-16	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1472267_27	phrog_424	96.2	3.5e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1472267_27	UniRef90_A0A0U3EGR7	226.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1472267_27	1151292.QEW_4547	206.0	0	N/A	N/A
Pfam	UHGV-1472267_27	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1472267_27	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1472267_27	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_28	phrog_190	111.0	9.1e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472267_28	UniRef90_A0A8D9PDD6	273.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1472267_28	862517.HMPREF9225_1657	84.0	5.08e-19	N/A	N/A
Pfam	UHGV-1472267_28	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1472267_28	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1472267_30	K02315	121.2	1.1e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1472267_30	phrog_50	124.1	1.3e-36	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472267_30	UniRef90_A0A810Q3X8	291.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1472267_30	445972.ANACOL_01829	181.0	0	N/A	N/A
Pfam	UHGV-1472267_30	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1472267_30	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1472267_30	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_31	phrog_15768	76.5	2.2e-23	N/A	unknown function
UniRef90	UHGV-1472267_31	UniRef90_UPI001959E913	105.0	8.22e-25	N/A	N/A
eggNOG-mapper	UHGV-1472267_31	445970.ALIPUT_02689	81.6	5.78e-16	DNA-binding transcription factor activity	N/A
Pfam	UHGV-1472267_31	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1472267_31	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-1472267_31	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1472267_33	K03111	120.1	2.9e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1472267_33	phrog_44	114.5	1.1e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472267_33	UniRef90_A0A8D9PDS7	236.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-1472267_33	552398.HMPREF0866_01635	117.0	4.01e-32	Single-strand binding protein family	N/A
Pfam	UHGV-1472267_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1472267_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1472267_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1472267_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1472267_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_34	phrog_7566	96.8	1.2e-28	N/A	unknown function
UniRef90	UHGV-1472267_34	UniRef90_A0A8D9UHC0	193.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1472267_34	693746.OBV_24070	122.0	5.46e-35	N/A	N/A
PHROG	UHGV-1472267_36	phrog_72	53.0	0.0000000000000024	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472267_36	UniRef90_A0A8D9PDS2	340.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1472267_36	445972.ANACOL_01825	130.0	8.94e-36	N/A	N/A
structural_annotation	UHGV-1472267_36	PF05772	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472267_37	UniRef90_B0PAM4	155.0	9.80909e-45	YqaJ domain-containing protein	N/A
Pfam	UHGV-1472267_37	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-1472267_37	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472267_38	UniRef90_A0A845QLQ8	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-1472267_38	33035.JPJF01000135_gene5082	115.0	2.86e-29	N/A	N/A
Pfam	UHGV-1472267_38	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1472267_38	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472267_40	UniRef90_A0A8D9UH91	311.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1472267_40	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-1472267_40	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1472267_45	K22300	41.2	0.000000000032	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
Pfam	UHGV-1472267_45	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
UniRef90	UHGV-1472267_46	UniRef90_A0A8D9PDN2	122.0	2.49e-35	DNA-binding protein	N/A
structural_annotation	UHGV-1472267_46	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472267_47	PF13601,MF_01819,TIGR02337,COG3432	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_49	phrog_8	40.3	0.000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-1472267_49	UniRef90_A0A7X5IRY2	79.0	8.99e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1472267_49	1507.HMPREF0262_00424	69.7	0.0000000000000746	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1472267_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1472267_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1472267_49	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472267_51	477974.Daud_0706	66.6	0.000000000112	PFAM copper amine oxidase domain protein	N/A
COG	UHGV-1472267_51	COG0103	N/A	N/A	Ribosomal protein S9	N/A
UniRef90	UHGV-1472267_52	UniRef90_A0A8D9UHA6	342.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1472267_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1472267_52	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1472267_52	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1472267_53	K14059	166.8	0	int; integrase	N/A
PHROG	UHGV-1472267_53	phrog_1	160.0	0	integrase	integration and excision
UniRef90	UHGV-1472267_53	UniRef90_A0A174HFN7	349.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1472267_53	742738.HMPREF9460_01344	212.0	0	Phage integrase family	N/A
Pfam	UHGV-1472267_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1472267_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1472267_53	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472267_54	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_55	phrog_20016	183.7	0	N/A	unknown function
UniRef90	UHGV-1472267_55	UniRef90_A0A285PT46	176.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1472267_55	1226322.HMPREF1545_00077	163.0	0	N/A	N/A
structural_annotation	UHGV-1472267_55	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1472267_57	phrog_16490	121.4	1e-35	N/A	unknown function
eggNOG-mapper	UHGV-1472267_57	1408437.JNJN01000043_gene803	173.0	0	N/A	N/A
PHROG	UHGV-1472267_58	phrog_22984	77.0	1.9e-22	N/A	unknown function
PHROG	UHGV-1472267_59	phrog_21718	74.2	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-1472267_59	476272.RUMHYD_01768	68.9	0.00000000000081	N/A	N/A
PHROG	UHGV-1472267_60	phrog_3754	95.1	6.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-1472267_60	476272.RUMHYD_01764	161.0	0	N/A	N/A
PHROG	UHGV-1472267_61	phrog_22978	917.4	0	N/A	unknown function
UniRef90	UHGV-1472267_61	UniRef90_A0A1Y4WLF7	916.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1472267_61	1410650.JHWL01000003_gene2814	590.0	0	N/A	N/A
Pfam	UHGV-1472267_61	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5