UHGV-1472557 (vOTU-035638)

Viral Genome: UHGV-1472557

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1472557
vOTU ID	vOTU-035638
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0215313
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.3 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9766
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.02
Jumbo phage	No

Genome content
Genome length (bp)	30,715
GC content	49.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	92%
Average CDS length (bps)	638.80
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1472557_1	K14059	218.0	0	int; integrase	N/A
PHROG	UHGV-1472557_1	phrog_1	204.7	0	integrase	integration and excision
UniRef90	UHGV-1472557_1	UniRef90_C8WA39	392.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-1472557_1	521095.Apar_0546	392.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1472557_1	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1472557_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1472557_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1472557_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_2	phrog_130	144.7	6.89439e-43	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1472557_2	UniRef90_UPI0015F32671	123.0	2.87e-30	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1472557_2	411902.CLOBOL_04249	119.0	1.61e-29	BRO family, N-terminal domain	N/A
Pfam	UHGV-1472557_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1472557_2	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1472557_2	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-1472557_4	K01447	68.8	8.9e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1472557_4	phrog_14048	128.5	5.4e-38	endolysin	lysis
UniRef90	UHGV-1472557_4	UniRef90_B9CLI8	545.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1472557_4	553184.ATORI0001_1164	545.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1472557_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1472557_4	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
Pfam	UHGV-1472557_4	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-1472557_4	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1472557_4	PF01510,PF19127,MF_04111,TIGR04035,NF008758,COG5263,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_5	phrog_443	62.0	1.5e-17	holin	lysis
UniRef90	UHGV-1472557_5	UniRef90_A0A1H4JBG1	74.7	4.69e-16	Phage r1t holin	N/A
eggNOG-mapper	UHGV-1472557_5	553184.ATORI0001_1165	129.0	1.73e-38	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1472557_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1472557_5	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_7	phrog_13141	126.9	6.1e-38	N/A	unknown function
UniRef90	UHGV-1472557_7	UniRef90_A0A7K3I4P1	85.1	8.71e-16	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-1472557_7	1111121.HMPREF1247_0855	94.4	8.84e-20	N/A	N/A
structural_annotation	UHGV-1472557_7	PF20747,PF08931	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_9	phrog_538	149.9	1.54143e-44	minor tail protein	tail
UniRef90	UHGV-1472557_9	UniRef90_UPI001C0FDE3C	176.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1472557_9	1256908.HMPREF0373_00466	182.0	0	N/A	N/A
structural_annotation	UHGV-1472557_9	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472557_10	1111121.HMPREF1247_0852	113.0	5.53e-27	N/A	N/A
structural_annotation	UHGV-1472557_10	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_11	phrog_1686	195.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1472557_11	UniRef90_A0A374VGU6	425.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1472557_11	553184.ATORI0001_1171	350.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1472557_11	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1472557_11	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1472557_11	COG1340	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472557_11	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_14	phrog_117	60.3	3.3e-17	major tail protein	tail
UniRef90	UHGV-1472557_14	UniRef90_A0A8D5UII9	144.0	3.14e-40	Tail protein	N/A
eggNOG-mapper	UHGV-1472557_14	706433.HMPREF9430_01260	66.2	0.0000000000782	domain, Protein	N/A
COG	UHGV-1472557_14	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472557_14	PF09393,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_15	phrog_123	50.1	0.000000000000053	tail terminator	connector
structural_annotation	UHGV-1472557_15	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_17	phrog_501	44.6	0.0000000000019	head closure Hc1	connector
eggNOG-mapper	UHGV-1472557_17	401473.BDP_1466	69.3	0.000000000000137	N/A	N/A
structural_annotation	UHGV-1472557_17	PF12206,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472557_18	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_19	phrog_544	95.5	6.1e-28	major head protein	head and packaging
UniRef90	UHGV-1472557_19	UniRef90_A0A7K3KIA2	221.0	0	Rho_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1472557_19	1121866.AUGK01000014_gene2054	214.0	0	N/A	N/A
structural_annotation	UHGV-1472557_19	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_20	phrog_9857	71.9	7.7e-21	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1472557_20	1437609.BCAL_0174	55.8	0.000000286	N/A	N/A
PHROG	UHGV-1472557_21	phrog_193	119.5	3.9e-35	head maturation protease	head and packaging
UniRef90	UHGV-1472557_21	UniRef90_A0A899IMX8	67.0	0.00000000112	Capsid maturation protease	N/A
eggNOG-mapper	UHGV-1472557_21	1437603.BMON_1143	68.6	0.0000000000625	N/A	N/A
PHROG	UHGV-1472557_22	phrog_104	229.6	0	portal protein	head and packaging
UniRef90	UHGV-1472557_22	UniRef90_A0A374VFC7	555.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1472557_22	742742.HMPREF9452_01310	232.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1472557_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1472557_22	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_23	phrog_9	159.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1472557_23	UniRef90_UPI001D09400E	561.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1472557_23	521003.COLINT_02339	402.0	0	Terminase	N/A
COG	UHGV-1472557_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1472557_23	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472557_24	UniRef90_A0A133XS49	138.0	1.29e-39	Phage terminase, small subunit, P27 family	N/A
structural_annotation	UHGV-1472557_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472557_26	UniRef90_UPI001D05E258	198.0	0	JAB domain-containing protein	N/A
PHROG	UHGV-1472557_27	phrog_940	285.3	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472557_27	UniRef90_R7BP41	491.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1472557_27	1232449.BAHV02000018_gene1534	293.0	0	N/A	N/A
PADLOC	UHGV-1472557_27	MTase_II_00015	49.1	0.000000000000095	Type II methyltransferase	RM
Pfam	UHGV-1472557_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1472557_27	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1472557_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1472557_27	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_28	phrog_338	71.1	2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472557_28	UniRef90_UPI0018AC2FDB	126.0	8.87e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1472557_28	521003.COLINT_02336	88.6	6.12e-21	HNH nucleases	N/A
COG	UHGV-1472557_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1472557_31	phrog_36	49.3	0.000000000000088	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1472557_31	1125712.HMPREF1316_1526	74.3	0.0000000000000146	N/A	N/A
structural_annotation	UHGV-1472557_31	PF04545,MF_00674,TIGR02984,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1472557_32	K03111	131.7	8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1472557_32	phrog_44	128.0	6.8e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472557_32	UniRef90_UPI00187749BE	191.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1472557_32	553184.ATORI0001_1274	198.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1472557_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1472557_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1472557_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1472557_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1472557_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1472557_35	K00558	257.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1472557_35	phrog_116	297.1	0	DNA methyltransferase	other
UniRef90	UHGV-1472557_35	UniRef90_A0A087VUP6	332.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1472557_35	1384484.AEQU_0051	297.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1472557_35	MTase_II_00058	219.9	0	Type II methyltransferase	RM
Pfam	UHGV-1472557_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1472557_35	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1472557_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1472557_35	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_36	phrog_954	180.6	0	DNA methyltransferase	other
UniRef90	UHGV-1472557_36	UniRef90_B9CN54	315.0	0	Methyltransferase domain protein	N/A
eggNOG-mapper	UHGV-1472557_36	553184.ATORI0001_1197	326.0	0	Methyltransferase domain	N/A
PADLOC	UHGV-1472557_36	MTase_II_00074	173.5	0	Type II methyltransferase	RM
Pfam	UHGV-1472557_36	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1472557_36	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1472557_36	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-1472557_37	phrog_21525	84.5	9.4e-25	N/A	unknown function
PHROG	UHGV-1472557_38	phrog_14105	218.5	0	N/A	unknown function
UniRef90	UHGV-1472557_38	UniRef90_UPI000C077CF9	187.0	0	PPE family protein	N/A
eggNOG-mapper	UHGV-1472557_38	1111121.HMPREF1247_0039	180.0	0	PPE family	N/A
Pfam	UHGV-1472557_38	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-1472557_38	COG5651	N/A	N/A	PPE-repeat protein	N/A
PHROG	UHGV-1472557_39	phrog_10048	172.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1472557_39	338966.Ppro_3721	150.0	6.70003e-41	N/A	N/A
PHROG	UHGV-1472557_40	phrog_34396	165.8	0	N/A	unknown function
UniRef90	UHGV-1472557_40	UniRef90_UPI0009355547	155.0	3.72998e-41	N/A	N/A
Pfam	UHGV-1472557_40	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1472557_40	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1472557_41	K01160	52.5	0.000000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1472557_41	phrog_140	69.6	5.6e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472557_41	UniRef90_A0A133XPE4	79.0	4.27e-16	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1472557_41	1504822.CCNO01000013_gene309	88.6	1.87e-20	crossover junction endodeoxyribonuclease activity	N/A
Pfam	UHGV-1472557_41	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1472557_41	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1472557_41	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-1472557_43	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1472557_43	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
KOfam	UHGV-1472557_44	K07741	122.9	5.6e-36	antB; anti-repressor protein	N/A
PHROG	UHGV-1472557_44	phrog_130	242.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1472557_44	UniRef90_UPI000E3CDD67	347.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1472557_44	78346.BRUM_0415	286.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1472557_44	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1472557_44	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1472557_44	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1472557_44	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A