UHGV-1472996 (vOTU-025358)

Viral Genome: UHGV-1472996

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1472996
vOTU ID	vOTU-025358
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0281529
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.35 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.96
Jumbo phage	No

Genome content
Genome length (bp)	42,540
GC content	40.29%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	94%
Average CDS length (bps)	512.54
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 74.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1472996_8	phrog_38	148.1	5.46506e-44	terminase large subunit	head and packaging
UniRef90	UHGV-1472996_8	UniRef90_UPI001D009E65	969.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1472996_8	1121866.AUGK01000003_gene1428	236.0	0	chromosome segregation	N/A
NCBIFam	UHGV-1472996_8	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1472996_8	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472996_8	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_9	phrog_36	51.0	0.000000000000028	transcriptional regulator	transcription regulation
COG	UHGV-1472996_9	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1472996_9	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472996_10	PF10122,NF041070,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_11	phrog_64	175.3	0	portal protein	head and packaging
UniRef90	UHGV-1472996_11	UniRef90_A0A416G2F2	796.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1472996_11	1298920.KI911353_gene2663	461.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1472996_11	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1472996_11	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472996_12	UniRef90_R6C0B6	145.0	9.65004e-41	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1472996_13	phrog_909	82.3	4.4e-24	major head protein	head and packaging
UniRef90	UHGV-1472996_13	UniRef90_R7BGI8	183.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1472996_13	1121121.KB894312_gene3158	52.4	0.000000345	N/A	N/A
PHROG	UHGV-1472996_14	phrog_29	160.3	0	major head protein	head and packaging
UniRef90	UHGV-1472996_14	UniRef90_A0A173UF26	665.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-1472996_14	756499.Desde_1083	167.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1472996_14	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1472996_14	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472996_15	UniRef90_A0A416G2T8	61.2	0.000000000134	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1472996_15	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472996_16	397290.C810_01402	57.4	0.00000000506	N/A	N/A
eggNOG-mapper	UHGV-1472996_17	1232452.BAIB02000007_gene1606	51.2	0.00000106	N/A	N/A
PHROG	UHGV-1472996_18	phrog_1129	74.7	8.3e-22	holin	lysis
UniRef90	UHGV-1472996_18	UniRef90_A0A8D9UII9	136.0	4.79999e-40	Holin	N/A
eggNOG-mapper	UHGV-1472996_18	411461.DORFOR_00721	103.0	9.71e-28	N/A	N/A
Pfam	UHGV-1472996_18	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1472996_18	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472996_19	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472996_20	UniRef90_UPI001BBD4500	129.0	4.94e-35	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1472996_20	397290.C810_01411	181.0	0	N/A	N/A
structural_annotation	UHGV-1472996_20	PF17395,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_21	phrog_374	175.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472996_21	UniRef90_W5RV26	149.0	6.20005e-41	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1472996_21	1232453.BAIF02000058_gene1632	191.0	0	N/A	N/A
structural_annotation	UHGV-1472996_22	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1472996_23	476272.RUMHYD_01968	182.0	0	N/A	N/A
PHROG	UHGV-1472996_24	phrog_36112	57.8	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1472996_24	1298920.KI911353_gene2651	113.0	1.24e-29	N/A	N/A
structural_annotation	UHGV-1472996_24	PF16478	N/A	N/A	N/A	N/A
KOfam	UHGV-1472996_26	K07273	163.8	0	acm; lysozyme	N/A
PHROG	UHGV-1472996_26	phrog_291	130.8	1.3e-38	endolysin	lysis
UniRef90	UHGV-1472996_26	UniRef90_UPI001D05F2B6	549.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1472996_26	1235800.C819_00458	213.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1472996_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1472996_26	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1472996_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1472996_26	PF01183,PF01471,MF_02227,NF007360,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_27	phrog_1535	144.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1472996_27	1298920.KI911353_gene2649	300.0	0	tape measure	N/A
COG	UHGV-1472996_27	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1472996_28	phrog_1194	50.4	0.000000000000035	N/A	unknown function
Pfam	UHGV-1472996_28	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1472996_28	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_29	phrog_18190	584.8	0	N/A	unknown function
UniRef90	UHGV-1472996_29	UniRef90_UPI001D0767E1	893.0	0	gp58-like family protein	N/A
eggNOG-mapper	UHGV-1472996_29	1235790.C805_00089	367.0	0	N/A	N/A
PHROG	UHGV-1472996_32	phrog_17196	104.7	6.1e-31	kinase	other
eggNOG-mapper	UHGV-1472996_32	1235790.C805_00090	135.0	4.71e-33	N/A	N/A
structural_annotation	UHGV-1472996_32	PF13619	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_34	phrog_4	43.6	0.0000000000055	transcriptional repressor	transcription regulation
UniRef90	UHGV-1472996_34	UniRef90_UPI001D074CCD	519.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1472996_34	411463.EUBVEN_01507	63.5	0.00000000431	N/A	N/A
Pfam	UHGV-1472996_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1472996_34	PF13443,PF00717,MF_00015,NF041951,TIGR02228,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1472996_36	K18830	66.1	5.3e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1472996_36	phrog_8	49.9	0.000000000000058	transcriptional regulator	transcription regulation
UniRef90	UHGV-1472996_36	UniRef90_A0A6L8T004	158.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1472996_36	748224.HMPREF9436_01444	122.0	6.78e-34	N/A	N/A
PADLOC	UHGV-1472996_36	retron_type_VI_hth_cluster2_1	47.6	0.00000000000037	N/A	Retron
Pfam	UHGV-1472996_36	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1472996_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1472996_36	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1472996_42	K07741	42.8	0.000000000015	antB; anti-repressor protein	N/A
PHROG	UHGV-1472996_42	phrog_63	170.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1472996_42	UniRef90_UPI001D084E13	484.0	0	phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-1472996_42	642492.Clole_1828	222.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1472996_42	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1472996_42	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-1472996_42	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1472996_42	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-1472996_42	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_43	phrog_19890	80.9	1.5e-23	N/A	unknown function
UniRef90	UHGV-1472996_43	UniRef90_A0A352SFF8	297.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1472996_43	1410650.JHWL01000003_gene2854	145.0	9.0706e-42	lytic transglycosylase activity	N/A
Pfam	UHGV-1472996_43	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1472996_43	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1472996_43	PF01464,MF_01381,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_44	phrog_22292	60.9	1.8e-17	N/A	unknown function
UniRef90	UHGV-1472996_47	UniRef90_UPI001D091C1C	206.0	0	sporulation initiation factor Spo0A C-terminal domain-containing protein	N/A
Pfam	UHGV-1472996_47	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-1472996_47	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-1472996_47	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-1472996_48	K19171	79.1	3.7e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1472996_48	phrog_77	152.3	2.8026e-45	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472996_48	UniRef90_A0A412RQV0	456.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1472996_48	397290.C810_01461	441.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1472996_48	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1472996_48	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_49	phrog_4433	236.5	0	N/A	unknown function
UniRef90	UHGV-1472996_49	UniRef90_UPI0015C58C2D	115.0	2.48e-27	N/A	N/A
eggNOG-mapper	UHGV-1472996_49	665950.HMPREF1025_01373	172.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1472996_49	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1472996_50	PF02237,MF_00257,NF037951,COG4013	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_51	phrog_20229	61.4	1.3e-17	N/A	unknown function
UniRef90	UHGV-1472996_51	UniRef90_UPI001D062CD1	122.0	3.8e-35	transmembrane Fragile-X-F protein	N/A
eggNOG-mapper	UHGV-1472996_51	1225795.K4I4H9_9CAUD	63.9	0.00000000000061	N/A	N/A
structural_annotation	UHGV-1472996_51	TIGR04438	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1472996_52	PF13973,PF04319,PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_53	phrog_561	177.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472996_53	UniRef90_UPI001F3F277E	200.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1472996_53	537013.CLOSTMETH_01715	212.0	0	N/A	N/A
Pfam	UHGV-1472996_53	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1472996_53	NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_54	phrog_25456	52.2	0.00000000000001	N/A	unknown function
KOfam	UHGV-1472996_55	K06167	42.9	0.000000000000066	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1472996_55	phrog_392	150.6	1.4013e-45	metal-dependent hydrolase	other
UniRef90	UHGV-1472996_55	UniRef90_A0A416G2C4	258.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1472996_55	397290.C810_01486	223.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1472996_55	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
COG	UHGV-1472996_55	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1472996_55	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_56	phrog_6724	88.2	7.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1472996_56	1463936.JOJI01000043_gene7935	65.5	0.00000000000233	N/A	N/A
PHROG	UHGV-1472996_58	phrog_19106	325.9	0	N/A	unknown function
UniRef90	UHGV-1472996_58	UniRef90_UPI001D086F0C	377.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1472996_58	658655.HMPREF0988_00875	249.0	0	N/A	N/A
structural_annotation	UHGV-1472996_58	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_59	phrog_22725	78.2	7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1472996_59	397290.C810_01475	68.2	0.0000000000000362	N/A	N/A
PHROG	UHGV-1472996_61	phrog_8489	192.5	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1472996_61	UniRef90_A0A352SFU9	212.0	0	DNA replication protein (Fragment)	N/A
eggNOG-mapper	UHGV-1472996_61	1140001.I571_01717	152.0	1.4013e-45	DnaD domain protein	N/A
COG	UHGV-1472996_61	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1472996_61	TIGR01714	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472996_64	UniRef90_UPI001D072F7E	92.8	3.09e-20	N/A	N/A
eggNOG-mapper	UHGV-1472996_64	397290.C810_01492	62.4	0.000000000927	N/A	N/A
UniRef90	UHGV-1472996_65	UniRef90_UPI001D064D4E	192.0	0	N/A	N/A
Pfam	UHGV-1472996_65	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1472996_67	phrog_8684	97.1	1.1e-28	N/A	unknown function
UniRef90	UHGV-1472996_67	UniRef90_A0A352SFV6	116.0	2.11e-30	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1472996_67	411470.RUMGNA_02199	81.3	1.59e-17	N/A	N/A
Pfam	UHGV-1472996_67	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1472996_67	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1472996_67	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472996_69	UniRef90_UPI001C02F342	95.9	7.07e-22	N/A	N/A
eggNOG-mapper	UHGV-1472996_69	428127.EUBDOL_01238	101.0	1.24e-25	N/A	N/A
PHROG	UHGV-1472996_70	phrog_599	53.7	0.0000000000000047	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1472996_70	UniRef90_A0A412KFB8	165.0	0	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-1472996_70	1235790.C805_00069	85.9	4.14e-21	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1472996_70	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1472996_70	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1472996_70	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_72	phrog_874	173.9	0	N/A	unknown function
UniRef90	UHGV-1472996_72	UniRef90_A0A4P6LRJ9	195.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1472996_72	411468.CLOSCI_00298	191.0	0	N/A	N/A
structural_annotation	UHGV-1472996_72	PF04266,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-1472996_73	phrog_1578	49.7	0.000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-1472996_73	637730.C8XUQ6_9CAUD	47.0	0.00000808	N/A	N/A
UniRef90	UHGV-1472996_76	UniRef90_UPI001D07A23A	237.0	0	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1472996_76	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1472996_77	UniRef90_A0A413Z5X3	79.3	5.89e-18	LuxR family transcriptional regulator	N/A
Pfam	UHGV-1472996_77	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-1472996_77	PF00196,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1472996_78	K14059	119.7	3.7e-35	int; integrase	N/A
PHROG	UHGV-1472996_78	phrog_1	120.2	2e-35	integrase	integration and excision
UniRef90	UHGV-1472996_78	UniRef90_UPI001D00AE51	487.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1472996_78	97139.C824_00125	442.0	0	Phage integrase family	N/A
Pfam	UHGV-1472996_78	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1472996_78	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1472996_78	PF00589,PF02920,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A