UHGV-1475055 (vOTU-152554)

Viral Genome: UHGV-1475055

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1475055
vOTU ID	vOTU-152554
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0209963
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.35 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.28
Jumbo phage	No

Genome content
Genome length (bp)	29,743
GC content	36.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	89%
Average CDS length (bps)	604.16
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1475055_1	397290.C810_01390	106.0	7.88e-26	chromosome segregation	N/A
COG	UHGV-1475055_1	COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_2	phrog_36	69.5	5.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1475055_2	UniRef90_A0A352SH29	105.0	4.22e-27	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-1475055_2	97138.C820_00772	78.2	1.68e-16	sigma factor activity	N/A
COG	UHGV-1475055_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1475055_2	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_3	phrog_64	138.8	2.70002e-41	portal protein	head and packaging
UniRef90	UHGV-1475055_3	UniRef90_A0A8D9PG58	1015.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1475055_3	397290.C810_01397	459.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1475055_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1475055_3	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_5	phrog_544	277.3	0	major head protein	head and packaging
UniRef90	UHGV-1475055_5	UniRef90_A0A8D9PGL1	635.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1475055_5	608534.GCWU000341_02293	331.0	0	N/A	N/A
NCBIFam	UHGV-1475055_5	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1475055_5	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1475055_6	UniRef90_A0A8D9UIY7	166.0	0	Rho termination factor	N/A
structural_annotation	UHGV-1475055_6	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1475055_7	397290.C810_01402	72.0	0.0000000000000125	N/A	N/A
PHROG	UHGV-1475055_8	phrog_4105	92.2	3.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-1475055_8	411459.RUMOBE_00911	160.0	0	N/A	N/A
PHROG	UHGV-1475055_9	phrog_1129	76.0	2.7e-22	holin	lysis
UniRef90	UHGV-1475055_9	UniRef90_A0A8D9UII9	167.0	0	Holin	N/A
eggNOG-mapper	UHGV-1475055_9	411461.DORFOR_00721	107.0	3.55e-29	N/A	N/A
Pfam	UHGV-1475055_9	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1475055_9	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1475055_10	1298920.KI911353_gene2656	62.4	0.000000000271	N/A	N/A
structural_annotation	UHGV-1475055_10	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1475055_11	UniRef90_UPI001BBD4500	62.8	0.00000000394	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1475055_11	476272.RUMHYD_01963	95.9	2.05e-22	N/A	N/A
UniRef90	UHGV-1475055_12	UniRef90_UPI000AABEC73	84.0	6.26e-20	LLM class flavin-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-1475055_12	1499683.CCFF01000017_gene2117	84.0	1.2e-20	N/A	N/A
structural_annotation	UHGV-1475055_12	PF20075,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_13	phrog_374	202.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475055_13	UniRef90_A0A6L8SWJ4	172.0	0	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1475055_13	397290.C810_05173	169.0	0	N/A	N/A
structural_annotation	UHGV-1475055_13	PF17375	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475055_14	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1475055_15	1298920.KI911353_gene2652	65.1	0.000000000052	N/A	N/A
structural_annotation	UHGV-1475055_15	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_17	phrog_36112	68.8	5.6e-20	N/A	unknown function
UniRef90	UHGV-1475055_17	UniRef90_A0A8D9PG71	306.0	0	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-1475055_17	1298920.KI911353_gene2651	118.0	1.56e-31	N/A	N/A
structural_annotation	UHGV-1475055_17	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_19	phrog_28918	154.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1475055_19	1298920.KI911353_gene2649	273.0	0	tape measure	N/A
COG	UHGV-1475055_19	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1475055_19	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1475055_20	UniRef90_A0A8D9UIV6	219.0	0	RNAse domain protein	N/A
UniRef90	UHGV-1475055_21	UniRef90_UPI001D0E5D20	63.9	0.00000000000341	CopG family transcriptional regulator	N/A
structural_annotation	UHGV-1475055_21	PF01402,NF041793,COG4453	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_22	phrog_25289	46.6	0.00000000000038	N/A	unknown function
UniRef90	UHGV-1475055_22	UniRef90_A0A3D4QVQ7	89.4	1.39e-21	ANT domain-containing protein	N/A
eggNOG-mapper	UHGV-1475055_22	658655.HMPREF0988_00912	84.0	1.99e-18	Phage antirepressor protein KilAC domain	N/A
COG	UHGV-1475055_22	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-1475055_25	phrog_1194	66.5	3.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1475055_25	1232453.BAIF02000058_gene1638	66.2	0.00000000000271	N/A	N/A
structural_annotation	UHGV-1475055_25	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475055_26	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_27	phrog_6616	113.5	3.6e-36	tail protein	tail
UniRef90	UHGV-1475055_27	UniRef90_A0A8D9PGP3	983.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1475055_27	1294142.CINTURNW_1706	287.0	0	Phage minor structural protein	N/A
COG	UHGV-1475055_27	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1475055_27	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-1475055_29	K07273	141.1	9.99967e-42	acm; lysozyme	N/A
PHROG	UHGV-1475055_29	phrog_6745	97.0	2.1e-28	endolysin	lysis
UniRef90	UHGV-1475055_29	UniRef90_A0A1Q6KJN7	221.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-1475055_29	1235800.C819_00458	222.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1475055_29	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1475055_29	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1475055_29	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-1475055_30	K22300	59.9	4.8e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1475055_30	phrog_8	79.5	5.4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1475055_30	UniRef90_A0A8D9UIK2	222.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1475055_30	445974.CLORAM_02966	85.5	8.68e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1475055_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1475055_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1475055_30	PF13560,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1475055_31	UniRef90_A0A8D9UIR6	131.0	8.33e-39	DNA-binding transcriptional regulator	N/A
eggNOG-mapper	UHGV-1475055_31	1121335.Clst_0370	92.8	3.06e-24	N/A	N/A
structural_annotation	UHGV-1475055_31	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_32	phrog_463	210.2	0	anti-repressor	transcription regulation
UniRef90	UHGV-1475055_32	UniRef90_A0A8D9PGL6	339.0	0	P22_AR protein	N/A
eggNOG-mapper	UHGV-1475055_32	596329.HMPREF0631_1352	185.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-1475055_32	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1475055_32	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1475055_32	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1475055_32	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
COG	UHGV-1475055_34	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1475055_34	PF10552	N/A	N/A	N/A	N/A
KOfam	UHGV-1475055_37	K03111	41.3	0.00000000000066	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1475055_37	phrog_26861	122.5	2.3e-36	N/A	unknown function
UniRef90	UHGV-1475055_37	UniRef90_A0A8D9PGK1	234.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-1475055_37	515620.EUBELI_01590	225.0	0	N/A	N/A
Pfam	UHGV-1475055_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1475055_37	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1475055_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1475055_37	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1475055_38	K19171	104.8	8.1e-31	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1475055_38	phrog_77	190.9	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475055_38	UniRef90_A0A8D9PGW5	997.0	0	Chromosome partition protein	N/A
eggNOG-mapper	UHGV-1475055_38	1298920.KI911353_gene2731	301.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1475055_38	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1475055_38	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1475055_38	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-1475055_40	K07455	171.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1475055_40	phrog_148	161.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475055_40	UniRef90_A0A1C5WMV6	372.0	0	p33	N/A
eggNOG-mapper	UHGV-1475055_40	431943.CKL_0416	241.0	0	RecT family	N/A
Pfam	UHGV-1475055_40	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1475055_40	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1475055_40	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1475055_40	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_41	phrog_25456	42.3	1e-16	N/A	unknown function
PHROG	UHGV-1475055_42	phrog_15480	83.7	2.3e-24	methyltransferase	other
UniRef90	UHGV-1475055_42	UniRef90_A0A1C5WPJ5	308.0	0	Spermidine synthase	N/A
eggNOG-mapper	UHGV-1475055_42	1232447.BAHW02000015_gene1049	165.0	0	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	N/A
COG	UHGV-1475055_42	COG4262	N/A	N/A	Predicted spermidine synthase with an N-terminal membrane domain	N/A
structural_annotation	UHGV-1475055_42	PF02527,MF_02217,NF041650,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-1475055_43	K06167	43.9	0.0000000000028	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1475055_43	phrog_392	176.1	0	metal-dependent hydrolase	other
UniRef90	UHGV-1475055_43	UniRef90_A0A412RQX2	385.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1475055_43	1294142.CINTURNW_1011	149.0	1.10997e-41	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1475055_43	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-1475055_43	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1475055_43	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1475055_43	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1475055_44	phrog_4400	68.4	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1475055_44	357809.Cphy_2990	94.0	1.13e-22	N/A	N/A