UHGV-1475277 (vOTU-010127)

Viral Genome: UHGV-1475277

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1475277
vOTU ID	vOTU-010127
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0300096
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.02 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.76
Jumbo phage	No

Genome content
Genome length (bp)	46,649
GC content	36.56%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	92%
Average CDS length (bps)	571.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.02)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1475277_2	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-1475277_3	K03469	158.8	0	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1475277_3	phrog_531	143.2	1.19951e-42	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475277_3	UniRef90_A0A1M5KFY9	133.0	5.83e-37	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1475277_3	1089553.Tph_c24630	131.0	4.68e-37	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1475277_3	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1475277_3	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1475277_3	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_7	phrog_2412	47.2	0.00000000000031	N/A	unknown function
PHROG	UHGV-1475277_8	phrog_16126	83.5	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-1475277_8	665950.HMPREF1025_01978	69.3	0.000000000000519	N/A	N/A
PHROG	UHGV-1475277_11	phrog_2245	73.6	3e-21	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1475277_11	658655.HMPREF0988_00885	48.5	0.00000661	N/A	N/A
PHROG	UHGV-1475277_13	phrog_620	133.8	1.2e-39	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475277_13	UniRef90_A0A4D6A7C4	149.0	8.44002e-42	DNA modification methylase	N/A
eggNOG-mapper	UHGV-1475277_13	457405.FSDG_01579	110.0	1.96e-25	N-4 methylation of cytosine	N/A
PADLOC	UHGV-1475277_13	MTase_II_00015	75.5	9.1e-22	Type II methyltransferase	RM
Pfam	UHGV-1475277_13	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1475277_13	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1475277_13	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_14	phrog_842	58.0	1.8e-16	beta-glucosyl-HMC-alpha-glucosyltransferase	other
eggNOG-mapper	UHGV-1475277_14	1236514.BAKL01000015_gene1638	225.0	0	N/A	N/A
Pfam	UHGV-1475277_14	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-1475277_14	PF20691,MF_00057,NF038299,COG1216	N/A	N/A	N/A	N/A
KOfam	UHGV-1475277_21	K06909	318.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1475277_21	phrog_3717	126.2	1.20512e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1475277_21	UniRef90_A0A349YI29	542.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1475277_21	1443122.Z958_p0035	466.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1475277_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1475277_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1475277_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1475277_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1475277_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_23	phrog_4105	67.4	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1475277_23	411459.RUMOBE_00911	98.2	4.41e-26	N/A	N/A
PHROG	UHGV-1475277_24	phrog_443	46.6	0.00000000000088	holin	lysis
UniRef90	UHGV-1475277_24	UniRef90_UPI001BA9F6DF	75.5	2.82e-16	holin	N/A
eggNOG-mapper	UHGV-1475277_24	1235802.C823_05612	68.9	0.0000000000000187	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1475277_24	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1475277_24	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1475277_25	K01448	51.4	0.000000000000014	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1475277_25	phrog_7854	137.5	0	endolysin	lysis
UniRef90	UHGV-1475277_25	UniRef90_UPI000C77F229	340.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1475277_25	411462.DORLON_00764	268.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1475277_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1475277_25	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
Pfam	UHGV-1475277_25	PF19085	N/A	N/A	Choline-binding repeat	Choline_bind_2
COG	UHGV-1475277_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1475277_25	PF01520,TIGR02883,COG0860,COG5263	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_26	phrog_64	91.2	8e-27	portal protein	head and packaging
UniRef90	UHGV-1475277_26	UniRef90_A0A843GSM3	370.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1475277_26	1567015.A0A0A7RUQ6_9VIRU	134.0	3.91e-31	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1475277_26	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_27	phrog_1657	208.4	0	head morphogenesis	head and packaging
UniRef90	UHGV-1475277_27	UniRef90_A0A1G9U003	158.0	1.85952e-42	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-1475277_27	748727.CLJU_c31360	142.0	3.71e-36	Portal protein	N/A
COG	UHGV-1475277_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1475277_29	TIGR00310	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_30	phrog_2303	54.5	0.0000000000000027	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1475277_30	1231057.AMGD01000018_gene3620	59.3	0.0000000604	N/A	N/A
structural_annotation	UHGV-1475277_30	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_31	phrog_909	76.5	2.6e-22	major head protein	head and packaging
UniRef90	UHGV-1475277_31	UniRef90_A0A512PLH0	51.6	0.00000931	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-1475277_31	1158612.I580_01911	65.9	0.00000000000524	N/A	N/A
structural_annotation	UHGV-1475277_31	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_32	phrog_29	257.2	0	major head protein	head and packaging
UniRef90	UHGV-1475277_32	UniRef90_UPI00082C04A5	439.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1475277_32	1158612.I580_01912	307.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1475277_32	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1475277_32	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475277_33	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_34	phrog_4020	71.0	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1475277_34	445335.CBN_3083	68.2	0.0000000000000587	N/A	N/A
PHROG	UHGV-1475277_35	phrog_8435	61.1	1.7e-17	N/A	unknown function
structural_annotation	UHGV-1475277_35	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1475277_36	1443122.Z958_05860	95.5	6.55e-24	N/A	N/A
Pfam	UHGV-1475277_36	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1475277_36	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_37	phrog_7585	77.2	2.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1475277_37	445335.CBN_3080	65.5	0.00000000000654	N/A	N/A
structural_annotation	UHGV-1475277_37	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_38	phrog_6686	136.7	1.3e-40	tail tube protein	tail
UniRef90	UHGV-1475277_38	UniRef90_A0A1C6KI12	167.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1475277_38	748727.CLJU_c31250	97.4	2.81e-21	N/A	N/A
structural_annotation	UHGV-1475277_38	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_39	phrog_6280	130.6	7.2e-39	N/A	unknown function
UniRef90	UHGV-1475277_39	UniRef90_UPI001AA892DF	109.0	5.7e-28	esterase	N/A
eggNOG-mapper	UHGV-1475277_39	445335.CBN_3078	110.0	5.19e-29	N/A	N/A
PHROG	UHGV-1475277_40	phrog_6541	55.0	9.7e-16	N/A	unknown function
PHROG	UHGV-1475277_41	phrog_1533	552.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1475277_41	UniRef90_A0A352TM73	478.0	0	Phage tail tape measure protein (Fragment)	N/A
eggNOG-mapper	UHGV-1475277_41	1410670.JHXF01000015_gene2302	492.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1475277_41	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1475277_41	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1475277_41	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1475277_41	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_42	phrog_36410	46.4	0.00000000000039	N/A	unknown function
UniRef90	UHGV-1475277_42	UniRef90_UPI0018995149	70.5	0.000000000339	phage tail family protein	N/A
eggNOG-mapper	UHGV-1475277_42	1033738.CAEP01000018_gene3683	79.7	0.0000000000000353	Phage tail protein	N/A
COG	UHGV-1475277_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1475277_42	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_43	phrog_538	180.4	0	minor tail protein	tail
UniRef90	UHGV-1475277_43	UniRef90_A0A843GTT7	160.0	1.21997e-41	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1475277_43	573061.Clocel_2427	140.0	2.38e-35	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1475277_43	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
NCBIFam	UHGV-1475277_43	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1475277_43	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_44	phrog_1220	171.8	0	head protein	head and packaging
UniRef90	UHGV-1475277_44	UniRef90_UPI0005821E94	125.0	1.15e-28	methyl-accepting chemotaxis protein	N/A
eggNOG-mapper	UHGV-1475277_44	588581.Cpap_1262	135.0	6.97e-33	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1475277_44	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_47	phrog_36	51.1	0.000000000000027	transcriptional regulator	transcription regulation
Pfam	UHGV-1475277_47	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1475277_47	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475277_51	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-1475277_53	K02316	128.3	4.2e-38	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1475277_53	phrog_47	136.1	3.20001e-40	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475277_53	UniRef90_A0A843GN62	306.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-1475277_53	1005090.BAKON_056	74.7	0.00000000000564	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-1475277_53	drt-UG29	48.6	6e-27	DRT	DRT
Pfam	UHGV-1475277_53	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-1475277_53	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-1475277_53	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1475277_53	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_55	phrog_14578	45.7	0.00000000000063	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1475277_55	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-1475277_56	K02337	759.8	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-1475277_56	phrog_405	690.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475277_56	UniRef90_A0A843GPT9	916.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1475277_56	224324.aq_1008	451.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-1475277_56	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-1475277_56	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-1475277_56	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-1475277_56	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-1475277_56	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-1475277_56	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-1475277_56	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1475277_57	411473.RUMCAL_02525	143.0	5.98354e-43	N/A	N/A
KOfam	UHGV-1475277_58	K03553	179.3	0	recA; recombination protein RecA	N/A
PHROG	UHGV-1475277_58	phrog_97	180.0	0	UvsX-like recombinase	other
UniRef90	UHGV-1475277_58	UniRef90_A0A081BSP3	149.0	1.86e-38	Protein RecA	N/A
eggNOG-mapper	UHGV-1475277_58	1408439.JHXW01000009_gene386	142.0	5.66e-37	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-1475277_58	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-1475277_58	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-1475277_58	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_59	phrog_1706	61.5	1.4e-17	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475277_59	UniRef90_A0A5D3IBF8	60.5	0.00000041	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1475277_59	1499968.TCA2_4616	64.7	0.00000000289	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-1475277_59	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-1475277_59	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_62	phrog_159	49.4	0.000000000000025	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1475277_62	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_64	phrog_1909	135.1	4.39999e-40	N/A	unknown function
eggNOG-mapper	UHGV-1475277_64	1458697.W6E8E8_9CAUD	78.6	0.0000000000000727	N/A	N/A
KOfam	UHGV-1475277_65	K09882	141.7	5.89947e-42	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-1475277_65	phrog_249	207.9	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1475277_65	UniRef90_A0A1W1UZM7	266.0	0	AAA domain (Dynein-related subfamily)	N/A
eggNOG-mapper	UHGV-1475277_65	330395.Q30L55_9CAUD	174.0	0	ATPase activity	N/A
Pfam	UHGV-1475277_65	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
structural_annotation	UHGV-1475277_65	PF07728,MF_00016,TIGR01650,COG0714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475277_66	PF04347	N/A	N/A	N/A	N/A
PHROG	UHGV-1475277_68	phrog_6466	69.1	5.4e-20	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1475277_68	UniRef90_A0A843GQD5	99.0	9.68e-25	DNA_ligase_aden domain-containing protein	N/A
eggNOG-mapper	UHGV-1475277_68	691965.D4P7L3_9CAUD	55.1	0.000000235	helicase activity	N/A
PHROG	UHGV-1475277_72	phrog_2002	47.4	0.00000000000017	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1475277_72	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1475277_73	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A