UHGV-1477865 (vOTU-145619)

Viral Genome: UHGV-1477865

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1477865
vOTU ID	vOTU-145619
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0130572
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	54.79 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.963
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.2
Jumbo phage	No

Genome content
Genome length (bp)	18,253
GC content	36.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	24
CDS density	92%
Average CDS length (bps)	697.13
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1477865_7	phrog_1907	163.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477865_7	UniRef90_A0A843GHP1	270.0	0	DNA-directed DNA polymerase	N/A
structural_annotation	UHGV-1477865_7	PF03175,MF_04055,NF004417,COG0417	N/A	N/A	N/A	N/A
KOfam	UHGV-1477865_8	K03111	131.0	1.4e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1477865_8	phrog_44	124.8	7.1e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477865_8	UniRef90_D4J7E9	199.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1477865_8	1232447.BAHW02000038_gene2652	179.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1477865_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1477865_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1477865_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1477865_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1477865_8	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1477865_9	phrog_2150	90.2	2.4e-26	terminase	head and packaging
UniRef90	UHGV-1477865_9	UniRef90_A0A843H2X5	147.0	1.16e-37	Phage DNA encapsidation protein	N/A
Pfam	UHGV-1477865_9	PF05894	N/A	N/A	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
structural_annotation	UHGV-1477865_9	PF05894,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477865_11	411459.RUMOBE_01085	58.2	0.0000000105	N/A	N/A
structural_annotation	UHGV-1477865_11	PF01471	N/A	N/A	N/A	N/A
PHROG	UHGV-1477865_12	phrog_11037	80.3	3e-23	N/A	unknown function
UniRef90	UHGV-1477865_12	UniRef90_A0A6I3PQ49	104.0	2.29e-21	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1477865_12	641107.CDLVIII_5942	97.4	1.81e-19	SH3, type 3 domain protein	N/A
Pfam	UHGV-1477865_12	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1477865_12	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
COG	UHGV-1477865_12	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-1477865_12	PF18013,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1477865_13	phrog_918	96.7	1.2e-28	N/A	unknown function
UniRef90	UHGV-1477865_13	UniRef90_UPI00156D5D02	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-1477865_13	537007.BLAHAN_05515	150.0	0	N/A	N/A
Pfam	UHGV-1477865_13	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1477865_13	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1477865_15	phrog_2006	248.8	0	major head protein	head and packaging
UniRef90	UHGV-1477865_15	UniRef90_A0A843HQR2	328.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1477865_15	10756.CAPSD_BPPH2	178.0	0	viral capsid	N/A
structural_annotation	UHGV-1477865_15	PF19821,PF02368,MF_04119,NF033394,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-1477865_16	phrog_2248	112.9	0	tail protein	tail
UniRef90	UHGV-1477865_16	UniRef90_A0A843GNE5	212.0	0	Caud_tail_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1477865_16	1309583.M4W9Q4_9CAUD	121.0	2.43e-26	N/A	N/A
Pfam	UHGV-1477865_16	PF16838	N/A	N/A	Caudoviral major tail protein N-terminus	Caud_tail_N
Pfam	UHGV-1477865_16	PF20934	N/A	N/A	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
structural_annotation	UHGV-1477865_16	PF20934,PF16838	N/A	N/A	N/A	N/A
PHROG	UHGV-1477865_17	phrog_2038	159.1	0	upper collar connector	connector
UniRef90	UHGV-1477865_17	UniRef90_Q9FZW5	120.0	3.01e-28	Head-tail connector (Portal protein)	N/A
eggNOG-mapper	UHGV-1477865_17	10753.B7SSN1_BPNF	124.0	9.61e-31	Phage Connector (GP10)	N/A
Pfam	UHGV-1477865_17	PF05352	N/A	N/A	Phage Connector (GP10)	Phage_connector
structural_annotation	UHGV-1477865_17	PF05352,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1477865_18	phrog_3225	141.5	5.20022e-42	adaptor Ad4	connector
UniRef90	UHGV-1477865_18	UniRef90_A0A3G3LYS5	78.6	0.0000000000000572	Lower collar protein	N/A
eggNOG-mapper	UHGV-1477865_18	338473.A6XAD8_9CAUD	65.1	0.000000000884	N/A	N/A
structural_annotation	UHGV-1477865_19	PF20942,NF010681,COG1361	N/A	N/A	N/A	N/A
COG	UHGV-1477865_20	COG2373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477865_20	PF07679	N/A	N/A	N/A	N/A
PHROG	UHGV-1477865_21	phrog_31573	69.1	4.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1477865_21	1410622.JNKY01000013_gene1449	62.0	0.00000024	N/A	N/A
Pfam	UHGV-1477865_21	PF00657	N/A	N/A	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
structural_annotation	UHGV-1477865_21	PF14606,NF007819,COG3240	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477865_23	PF13742,MF_01959,NF009635,COG3390	N/A	N/A	N/A	N/A