UHGV-1477934 (vOTU-099554)

Viral Genome: UHGV-1477934

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1477934
vOTU ID	vOTU-099554
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0220858
Associated BioSample	SAMEA3665102
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.73 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7
Jumbo phage	No

Genome content
Genome length (bp)	31,700
GC content	37.68%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	81%
Average CDS length (bps)	449.37
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1477934_1	K00571	177.9	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1477934_1	phrog_67	160.8	0	DNA methyltransferase	other
UniRef90	UHGV-1477934_1	UniRef90_A0A1G5ET13	313.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1477934_1	1122243.KB903771_gene1539	197.0	0	DNA methylase	N/A
PADLOC	UHGV-1477934_1	MTase_II_00157	151.3	1.4013e-45	Type II methyltransferase	RM
Pfam	UHGV-1477934_1	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1477934_1	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1477934_1	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1477934_2	phrog_19106	296.1	0	N/A	unknown function
UniRef90	UHGV-1477934_2	UniRef90_R6RVQ6	259.0	0	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-1477934_2	658655.HMPREF0988_00875	213.0	0	N/A	N/A
structural_annotation	UHGV-1477934_2	TIGR01453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477934_4	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-1477934_5	phrog_8489	178.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477934_5	UniRef90_UPI001BB8B78A	203.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-1477934_5	1196322.A370_02071	136.0	4.6e-36	DnaD domain protein	N/A
COG	UHGV-1477934_5	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1477934_7	phrog_9804	177.1	0	N/A	unknown function
UniRef90	UHGV-1477934_7	UniRef90_A0A412RQW3	310.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1477934_7	1410650.JHWL01000003_gene2847	144.0	9.24997e-41	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1477934_7	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1477934_7	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1477934_12	phrog_22292	55.1	7.5e-16	N/A	unknown function
COG	UHGV-1477934_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1477934_15	phrog_8684	104.1	6.7e-32	N/A	unknown function
UniRef90	UHGV-1477934_15	UniRef90_A0A173RDP8	199.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-1477934_15	397290.C810_01526	91.7	7.21e-22	YopX protein	N/A
Pfam	UHGV-1477934_15	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1477934_15	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1477934_15	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1477934_16	phrog_10714	46.9	0.00000000000041	N/A	unknown function
KOfam	UHGV-1477934_18	K00558	132.4	2.7e-39	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1477934_18	phrog_116	139.1	1.99993e-41	DNA methyltransferase	other
UniRef90	UHGV-1477934_18	UniRef90_A0A412KF70	526.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1477934_18	397290.C810_05213	319.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1477934_18	MTase_II_00058	155.8	0	Type II methyltransferase	RM
Pfam	UHGV-1477934_18	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1477934_18	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1477934_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1477934_18	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1477934_19	K00558	40.3	0.000000000025	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1477934_19	phrog_26324	67.6	3.1e-20	DNA methyltransferase	other
UniRef90	UHGV-1477934_19	UniRef90_A0A8D9UIK6	328.0	0	Cytosine specific methyltransferase	N/A
eggNOG-mapper	UHGV-1477934_19	1356854.N007_05330	102.0	1.31e-21	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1477934_19	MTase_II_00147	58.5	1.5e-16	Type II methyltransferase	RM
Pfam	UHGV-1477934_19	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1477934_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1477934_21	phrog_16129	73.9	8.2e-22	excisionase	integration and excision
UniRef90	UHGV-1477934_21	UniRef90_A0A412RR26	212.0	0	HTH luxR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1477934_21	411489.CLOL250_01459	95.5	3.63e-24	Excisionase from transposon Tn916	N/A
Pfam	UHGV-1477934_21	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
Pfam	UHGV-1477934_21	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
NCBIFam	UHGV-1477934_21	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1477934_21	PF09035,TIGR01764,COG2771,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1477934_22	K14059	264.6	0	int; integrase	N/A
PHROG	UHGV-1477934_22	phrog_1	233.6	0	integrase	integration and excision
UniRef90	UHGV-1477934_22	UniRef90_R6CA87	585.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1477934_22	411489.CLOL250_01458	538.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1477934_22	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1477934_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1477934_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1477934_22	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477934_24	658655.HMPREF0988_00919	94.7	1.86e-22	N/A	N/A
eggNOG-mapper	UHGV-1477934_25	658655.HMPREF0988_00918	78.2	2.28e-18	N/A	N/A
PHROG	UHGV-1477934_26	phrog_16490	165.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1477934_26	397290.C810_01328	179.0	0	N/A	N/A
PHROG	UHGV-1477934_27	phrog_20016	165.9	0	N/A	unknown function
UniRef90	UHGV-1477934_27	UniRef90_A0A2Z4QB67	140.0	5.30001e-40	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1477934_27	1235790.C805_00062	170.0	0	N/A	N/A
structural_annotation	UHGV-1477934_27	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477934_28	658655.HMPREF0988_00915	124.0	2.23e-32	N/A	N/A
PHROG	UHGV-1477934_29	phrog_1233	47.9	0.00000000000022	N/A	unknown function
eggNOG-mapper	UHGV-1477934_29	658655.HMPREF0988_00914	90.1	5.05e-22	N/A	N/A
PHROG	UHGV-1477934_37	phrog_31631	80.3	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1477934_41	411470.RUMGNA_03786	81.6	3.07e-18	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1477934_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-1477934_42	658655.HMPREF0988_00895	89.0	8.92e-20	N/A	N/A
PHROG	UHGV-1477934_43	phrog_236	52.1	0.000000000000014	nucleotide kinase	other
UniRef90	UHGV-1477934_43	UniRef90_A0A412RQV8	270.0	0	N/A	N/A
eggNOG-mapper	UHGV-1477934_43	1200557.JHWV01000001_gene285	68.2	0.00000000000777	N/A	N/A
Pfam	UHGV-1477934_43	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1477934_43	PF11753	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477934_45	1397699.JNIS01000001_gene2447	107.0	3.01e-24	Conserved phage C-terminus (Phg_2220_C)	N/A
structural_annotation	UHGV-1477934_45	PF07106,NF040642,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477934_46	UniRef90_A0A8D9PGW1	57.4	0.00000000149	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-1477934_46	PF05225,COG2886	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477934_49	PF04466	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477934_50	UniRef90_A0A8D9PGN8	69.7	0.0000000000000612	Acetyl-coA carboxylase zinc finger domain protein	N/A
PHROG	UHGV-1477934_53	phrog_38	145.2	4.30199e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1477934_53	UniRef90_A0A8D9UIV2	1001.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1477934_53	397290.C810_01390	674.0	0	chromosome segregation	N/A
COG	UHGV-1477934_53	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477934_53	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1477934_54	phrog_9529	75.5	6.1e-22	N/A	unknown function
UniRef90	UHGV-1477934_54	UniRef90_UPI000836A084	78.2	0.0000000000000163	N/A	N/A
eggNOG-mapper	UHGV-1477934_54	202752.JL53_03720	60.1	0.0000000268	N/A	N/A
Pfam	UHGV-1477934_54	PF04480	N/A	N/A	N/A	DUF559
COG	UHGV-1477934_54	COG2852	N/A	N/A	Very-short-patch-repair endonuclease	N/A
PHROG	UHGV-1477934_55	phrog_36	72.7	5.6e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1477934_55	UniRef90_A0A6N7XL46	82.4	3.55e-17	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1477934_55	1123288.SOV_6c01520	77.4	3.8e-16	sigma factor activity	N/A
Pfam	UHGV-1477934_55	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1477934_55	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1477934_55	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477934_56	UniRef90_A0A8D9UIR9	77.0	4.13e-17	RimK-related lysine biosynthesis protein	N/A
PHROG	UHGV-1477934_57	phrog_64	138.5	3.59994e-41	portal protein	head and packaging
UniRef90	UHGV-1477934_57	UniRef90_A0A412RQZ0	813.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1477934_57	1232453.BAIF02000058_gene1625	295.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1477934_57	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1477934_57	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A