UHGV-1477998 (vOTU-058421)

Viral Genome: UHGV-1477998

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1477998
vOTU ID	vOTU-058421
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0209863
Associated BioSample	SAMN05414975
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9667
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.37
Jumbo phage	No

Genome content
Genome length (bp)	29,583
GC content	61.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	93%
Average CDS length (bps)	570.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1477998_5	K06909	254.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1477998_5	phrog_5653	105.6	1.2e-31	terminase large subunit	head and packaging
UniRef90	UHGV-1477998_5	UniRef90_A0A1Y4G845	543.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1477998_5	1273103.NM10_06806	267.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1477998_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1477998_5	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-1477998_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1477998_6	phrog_533	207.6	0	portal protein	head and packaging
UniRef90	UHGV-1477998_6	UniRef90_UPI000DF7AA34	240.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1477998_6	661087.HMPREF1008_00894	205.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1477998_6	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_7	phrog_581	148.9	2.8026e-44	minor head protein	head and packaging
UniRef90	UHGV-1477998_7	UniRef90_UPI0003ADCFD0	206.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1477998_7	1111121.HMPREF1247_0842	206.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1477998_7	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1477998_7	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_9	phrog_585	81.1	1.4e-23	N/A	unknown function
UniRef90	UHGV-1477998_9	UniRef90_A0A7L9UIH6	108.0	2.37e-28	N/A	N/A
eggNOG-mapper	UHGV-1477998_9	1437610.BREU_1386	96.7	3.92e-24	N/A	N/A
Pfam	UHGV-1477998_9	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1477998_9	PF10711,TIGR03433,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_10	phrog_3675	66.2	3.3e-19	N/A	unknown function
UniRef90	UHGV-1477998_10	UniRef90_A0A3N0I0X7	82.0	5.55e-18	Dihydrolipoyl dehydrogenase	N/A
eggNOG-mapper	UHGV-1477998_10	585501.HMPREF6123_0838	65.9	0.00000000000191	YjcQ protein	N/A
Pfam	UHGV-1477998_10	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1477998_10	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_11	phrog_3675	49.0	0.000000000000071	N/A	unknown function
eggNOG-mapper	UHGV-1477998_11	469378.Ccur_02770	59.7	0.00000000087	YjcQ protein	N/A
Pfam	UHGV-1477998_11	PF09639	N/A	N/A	YjcQ protein	YjcQ
KOfam	UHGV-1477998_13	K07741	139.2	6.59998e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-1477998_13	phrog_130	256.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1477998_13	UniRef90_A0A252F729	311.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1477998_13	1122146.AUHP01000010_gene1023	284.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1477998_13	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1477998_13	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1477998_13	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1477998_13	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_15	phrog_194	62.5	9.7e-18	head scaffolding protein	head and packaging
Pfam	UHGV-1477998_15	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1477998_15	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_16	phrog_544	109.0	4.7e-32	major head protein	head and packaging
UniRef90	UHGV-1477998_16	UniRef90_R9C6R9	160.0	5.60519e-44	N/A	N/A
eggNOG-mapper	UHGV-1477998_16	673832.D2IYW7_9CAUD	148.0	1.28e-39	N/A	N/A
structural_annotation	UHGV-1477998_16	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477998_18	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_19	phrog_556	66.4	3.5e-19	minor head protein	head and packaging
UniRef90	UHGV-1477998_19	UniRef90_UPI0010F90370	54.3	0.000000485	minor capsid protein	N/A
eggNOG-mapper	UHGV-1477998_19	1214217.ALNF01000014_gene1371	50.8	0.0000019	Minor capsid protein	N/A
Pfam	UHGV-1477998_19	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1477998_19	PF11114,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477998_20	PF20765,COG5003	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477998_21	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477998_22	PF10666	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477998_23	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_24	phrog_706	109.9	2.1e-32	N/A	unknown function
UniRef90	UHGV-1477998_24	UniRef90_D6E8T4	119.0	6.19e-30	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1477998_24	411460.RUMTOR_02091	67.0	0.0000000000535	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-1477998_24	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1477998_24	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_25	phrog_58	238.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1477998_25	401473.BDP_1472	209.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1477998_25	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1477998_25	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1477998_25	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1477998_25	PF20155,TIGR02675,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_26	phrog_33	41.3	0.00000000003	distal tail protein Dit	tail
UniRef90	UHGV-1477998_26	UniRef90_UPI001F242491	122.0	1.9e-29	phage tail family protein	N/A
eggNOG-mapper	UHGV-1477998_26	658655.HMPREF0988_02551	119.0	2.81e-29	N/A	N/A
structural_annotation	UHGV-1477998_26	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_27	phrog_538	141.3	3.50044e-42	minor tail protein	tail
UniRef90	UHGV-1477998_27	UniRef90_A0A087E4D2	226.0	0	Phage head fiber protein	N/A
eggNOG-mapper	UHGV-1477998_27	1111121.HMPREF1247_0853	195.0	0	N/A	N/A
structural_annotation	UHGV-1477998_27	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_28	phrog_13141	145.0	4.40008e-43	N/A	unknown function
UniRef90	UHGV-1477998_28	UniRef90_A0A087E4D0	129.0	1.2e-32	Phage-related putative tail protein	N/A
eggNOG-mapper	UHGV-1477998_28	1256908.HMPREF0373_00465	89.4	3.47e-18	N/A	N/A
structural_annotation	UHGV-1477998_28	PF20747	N/A	N/A	N/A	N/A
KOfam	UHGV-1477998_31	K14059	183.5	0	int; integrase	N/A
PHROG	UHGV-1477998_31	phrog_1	161.5	0	integrase	integration and excision
UniRef90	UHGV-1477998_31	UniRef90_A0A7C8BRC2	283.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1477998_31	1235794.C811_01388	281.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1477998_31	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1477998_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1477998_31	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1477998_31	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_32	phrog_4105	62.1	9.1e-18	N/A	unknown function
UniRef90	UHGV-1477998_32	UniRef90_A0A087A0L5	70.9	0.0000000000000778	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-1477998_32	218140.BPSY_0948	95.9	1.84e-24	N/A	N/A
PHROG	UHGV-1477998_33	phrog_881	59.8	3e-17	holin	lysis
UniRef90	UHGV-1477998_33	UniRef90_A0A3N0I958	68.9	0.000000000000103	Holin	N/A
eggNOG-mapper	UHGV-1477998_33	326426.Bbr_0299	61.6	0.0000000000304	Putative phage holin Dp-1	N/A
Pfam	UHGV-1477998_33	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1477998_33	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-1477998_34	K01447	76.1	5.4e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1477998_34	phrog_2338	107.1	6.5e-33	endolysin	lysis
UniRef90	UHGV-1477998_34	UniRef90_A0A3N0I9E4	258.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1477998_34	1120979.ATVB01000018_gene1391	142.0	5.5e-37	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1477998_34	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1477998_34	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1477998_34	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1477998_34	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-1477998_35	K14059	200.5	0	int; integrase	N/A
PHROG	UHGV-1477998_35	phrog_1	155.5	0	integrase	integration and excision
UniRef90	UHGV-1477998_35	UniRef90_A0A2K2UBR2	386.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1477998_35	1089553.Tph_c21970	150.0	3.45e-39	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1477998_35	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1477998_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1477998_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1477998_35	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1477998_36	K22300	55.4	0.0000000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1477998_36	phrog_4	78.5	1e-22	transcriptional repressor	transcription regulation
UniRef90	UHGV-1477998_36	UniRef90_A0A1Q6E4H7	140.0	4.59e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1477998_36	268407.PWYN_03190	76.3	0.0000000000000255	Peptidase S24-like	N/A
Pfam	UHGV-1477998_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1477998_36	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1477998_36	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1477998_36	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477998_39	UniRef90_A0A3N0ATF1	48.5	0.00000698	HTH_17 domain-containing protein	N/A
Pfam	UHGV-1477998_39	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1477998_39	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
KOfam	UHGV-1477998_41	K01160	61.5	2.1e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1477998_41	phrog_140	84.2	1.7e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477998_41	UniRef90_R7BNY6	154.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1477998_41	479437.Elen_2598	108.0	2.34e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1477998_41	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1477998_41	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1477998_41	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477998_42	479437.Elen_2599	68.2	0.00000000000861	N/A	N/A
PHROG	UHGV-1477998_44	phrog_2760	168.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477998_44	UniRef90_R9KXC5	205.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1477998_44	1235794.C811_01355	205.0	0	RecT family	N/A
Pfam	UHGV-1477998_44	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1477998_44	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1477998_44	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
KOfam	UHGV-1477998_46	K03111	128.8	6.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1477998_46	phrog_44	126.5	1.8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477998_46	UniRef90_R7ANG4	222.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1477998_46	469378.Ccur_11550	213.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1477998_46	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1477998_46	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1477998_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1477998_46	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1477998_46	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1477998_47	phrog_15768	42.4	0.000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1477998_47	521003.COLINT_02319	58.5	0.00000000194	HNH endonuclease	N/A
Pfam	UHGV-1477998_47	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1477998_47	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A