UHGV-1479833 (vOTU-128324)

Viral Genome: UHGV-1479833

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1479833
vOTU ID	vOTU-128324
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0132571
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.05 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.66
Jumbo phage	No

Genome content
Genome length (bp)	18,467
GC content	39.29%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	29
CDS density	94%
Average CDS length (bps)	601.66
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1479833_1	K07505	308.9	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1479833_1	phrog_2597	674.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479833_1	UniRef90_D2MPJ9	786.0	0	Primase C terminal 2 (PriCT-2)	N/A
eggNOG-mapper	UHGV-1479833_1	679192.HMPREF9013_1315	786.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1479833_1	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1479833_1	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1479833_1	PF13481,PF12324,MF_00268,TIGR03880,COG3598	N/A	N/A	N/A	N/A
KOfam	UHGV-1479833_2	K01160	59.3	1.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1479833_2	phrog_140	90.5	2.1e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479833_2	UniRef90_UPI000CF950FC	155.0	1.4013e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1479833_2	1140001.I571_01822	112.0	3.31e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1479833_2	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1479833_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1479833_2	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_4	phrog_419	104.4	1.3e-30	N/A	unknown function
UniRef90	UHGV-1479833_4	UniRef90_A0A3F3A3T2	97.4	6.34e-25	Gp9	N/A
eggNOG-mapper	UHGV-1479833_4	1123263.AUKY01000015_gene1587	140.0	1.22053e-42	N/A	N/A
structural_annotation	UHGV-1479833_4	PF14083	N/A	N/A	N/A	N/A
UniRef90	UHGV-1479833_5	UniRef90_A0A3R6UZF2	107.0	2.62e-28	Transcriptional regulator	N/A
structural_annotation	UHGV-1479833_5	PF03444,MF_01819,TIGR04176,COG2345	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1479833_7	PF10571	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1479833_8	1123263.AUKY01000072_gene2097	48.9	0.00000414	N/A	N/A
structural_annotation	UHGV-1479833_10	PF04545,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_11	phrog_940	336.3	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1479833_11	UniRef90_UPI0009327623	470.0	0	N/A	N/A
eggNOG-mapper	UHGV-1479833_11	1232449.BAHV02000018_gene1534	361.0	0	N/A	N/A
PADLOC	UHGV-1479833_11	MTase_II_00015	134.1	1.5e-39	Type II methyltransferase	RM
Pfam	UHGV-1479833_11	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1479833_11	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1479833_11	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1479833_11	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_14	phrog_29609	42.7	0.0000000000069	N/A	unknown function
UniRef90	UHGV-1479833_15	UniRef90_F5KZP8	133.0	7.95e-37	Conserved domain protein	N/A
KOfam	UHGV-1479833_16	K06909	403.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1479833_16	phrog_3717	169.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1479833_16	UniRef90_A0A3P1S603	622.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1479833_16	411461.DORFOR_01162	488.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1479833_16	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1479833_16	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1479833_16	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1479833_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1479833_16	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_17	phrog_533	320.8	0	portal protein	head and packaging
UniRef90	UHGV-1479833_17	UniRef90_A0A3P1S3R5	474.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1479833_17	411470.RUMGNA_02212	409.0	0	N/A	N/A
structural_annotation	UHGV-1479833_17	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_18	phrog_581	309.9	0	minor head protein	head and packaging
UniRef90	UHGV-1479833_18	UniRef90_UPI00138F9ED1	342.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1479833_18	1449050.JNLE01000003_gene3892	321.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1479833_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1479833_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1479833_18	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_19	phrog_194	94.0	2.1e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-1479833_19	UniRef90_UPI001592F515	111.0	9.61e-28	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1479833_19	411470.RUMGNA_02218	114.0	2.04e-29	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1479833_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1479833_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_20	phrog_422	205.6	0	major head protein	head and packaging
UniRef90	UHGV-1479833_20	UniRef90_W0U896	290.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1479833_20	641112.ACOK01000073_gene2894	301.0	0	N/A	N/A
structural_annotation	UHGV-1479833_20	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_22	phrog_541	60.8	2.1e-17	head-tail adaptor	connector
UniRef90	UHGV-1479833_22	UniRef90_A0A371AQT0	79.7	9.16e-17	N/A	N/A
eggNOG-mapper	UHGV-1479833_22	1449050.JNLE01000003_gene3888	66.6	0.00000000000186	N/A	N/A
eggNOG-mapper	UHGV-1479833_23	1304866.K413DRAFT_3040	58.9	0.00000000178	N/A	N/A
structural_annotation	UHGV-1479833_23	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_24	phrog_556	88.8	1.9e-26	minor head protein	head and packaging
UniRef90	UHGV-1479833_24	UniRef90_UPI000691B8FF	126.0	2.2e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-1479833_24	1449050.JNLE01000003_gene3886	126.0	3.69e-35	N/A	N/A
Pfam	UHGV-1479833_24	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1479833_24	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_25	phrog_3266	67.9	1.4e-19	tail completion	connector
eggNOG-mapper	UHGV-1479833_25	1449050.JNLE01000003_gene3885	97.1	1.14e-23	N/A	N/A
structural_annotation	UHGV-1479833_25	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_26	phrog_3099	136.9	1.10001e-40	N/A	unknown function
eggNOG-mapper	UHGV-1479833_26	1304866.K413DRAFT_3043	177.0	0	N/A	N/A
structural_annotation	UHGV-1479833_26	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_27	phrog_11299	96.1	3.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1479833_27	1449050.JNLE01000003_gene3883	82.0	7.97e-18	N/A	N/A
structural_annotation	UHGV-1479833_27	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_28	phrog_706	131.9	4.4e-39	N/A	unknown function
UniRef90	UHGV-1479833_28	UniRef90_UPI00051C36A4	198.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1479833_28	1449050.JNLE01000003_gene3882	197.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1479833_28	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1479833_28	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1479833_29	phrog_1535	98.1	5.8e-29	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1479833_29	411902.CLOBOL_00126	75.1	0.00000000000589	N/A	N/A
COG	UHGV-1479833_29	COG5283	N/A	N/A	Phage-related tail protein	N/A