UHGV-1480159 (vOTU-161618)

Viral Genome: UHGV-1480159

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1480159
vOTU ID	vOTU-161618
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0210966
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.03 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.32
Jumbo phage	No

Genome content
Genome length (bp)	29,916
GC content	39.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	90%
Average CDS length (bps)	659.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1480159_4	UniRef90_UPI0015F48AC0	167.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1480159_4	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1480159_4	PF14354,TIGR03655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1480159_5	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_6	phrog_6058	42.4	0.0000000000073	N/A	unknown function
structural_annotation	UHGV-1480159_6	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1480159_10	K03497	155.8	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1480159_10	phrog_6218	242.7	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480159_10	UniRef90_A0A3D3D7T1	768.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1480159_10	1160721.RBI_I01596	235.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1480159_10	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1480159_10	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1480159_10	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1480159_10	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1480159_11	K03427	40.7	0.000000000024	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1480159_11	phrog_5696	219.3	0	N/A	unknown function
UniRef90	UHGV-1480159_11	UniRef90_UPI001B3C9C54	251.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1480159_11	397291.C804_06560	154.0	2.43826e-43	N-6 DNA Methylase	N/A
Pfam	UHGV-1480159_11	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1480159_11	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1480159_11	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_12	phrog_323	80.9	8.6e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480159_12	UniRef90_UPI001C01CFF8	296.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1480159_12	394503.Ccel_3305	342.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-1480159_12	PF00249	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-binding
dbAPIS	UHGV-1480159_12	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1480159_12	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-1480159_13	K04763	204.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1480159_13	phrog_1	163.0	0	integrase	integration and excision
UniRef90	UHGV-1480159_13	UniRef90_UPI001B3C6404	384.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1480159_13	1235793.C809_01951	224.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1480159_13	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1480159_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1480159_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1480159_13	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_14	phrog_24518	81.2	1.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1480159_14	1519439.JPJG01000077_gene922	110.0	1.35e-27	N/A	N/A
PHROG	UHGV-1480159_15	phrog_824	145.3	1.79366e-43	N/A	unknown function
UniRef90	UHGV-1480159_15	UniRef90_A0A3D3D6C6	248.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1480159_15	397288.C806_00096	158.0	0	VRR_NUC	N/A
Pfam	UHGV-1480159_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1480159_15	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_18	phrog_3584	148.0	6.30584e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1480159_18	1235800.C819_00515	70.5	0.0000000000134	N/A	N/A
structural_annotation	UHGV-1480159_18	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_19	phrog_31049	40.6	0.0000000000003	N/A	unknown function
eggNOG-mapper	UHGV-1480159_19	431943.CKL_4074	52.0	0.00000166	N/A	N/A
structural_annotation	UHGV-1480159_19	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_20	phrog_119	70.1	3.2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480159_20	UniRef90_A0A412ULY9	220.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1480159_20	1158607.UAU_01026	99.4	1.18e-25	HNH endonuclease	N/A
Pfam	UHGV-1480159_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1480159_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1480159_21	phrog_5110	81.9	5.3e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1480159_21	UniRef90_A0A1M5U1D5	114.0	5.93e-31	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1480159_21	1211817.CCAT010000053_gene2128	100.0	3.14e-26	N/A	N/A
Pfam	UHGV-1480159_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1480159_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_22	phrog_9	301.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1480159_22	UniRef90_A0A412UM03	1016.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1480159_22	86416.Clopa_0337	630.0	0	Phage Terminase	N/A
Pfam	UHGV-1480159_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1480159_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1480159_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1480159_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_23	phrog_12	94.6	8.2e-28	portal protein	head and packaging
UniRef90	UHGV-1480159_23	UniRef90_A0A412ULV9	752.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1480159_23	1415774.U728_1254	259.0	0	Phage portal protein	N/A
Pfam	UHGV-1480159_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1480159_23	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1480159_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1480159_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1480159_24	K01358	137.0	1.8e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1480159_24	phrog_94	206.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1480159_24	UniRef90_A0A412ULU1	466.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1480159_24	86416.Clopa_0340	175.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1480159_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1480159_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1480159_24	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_25	phrog_10	129.2	4.1e-38	major head protein	head and packaging
UniRef90	UHGV-1480159_25	UniRef90_A0A412ULW9	737.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1480159_25	1211817.CCAT010000053_gene2132	323.0	0	Phage capsid family	N/A
Pfam	UHGV-1480159_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1480159_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1480159_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1480159_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_26	phrog_749	54.6	0.0000000000000017	N/A	unknown function
UniRef90	UHGV-1480159_26	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1480159_26	1211817.CCAT010000053_gene2133	58.9	0.000000000584	N/A	N/A
PHROG	UHGV-1480159_27	phrog_19734	74.5	1.2e-21	N/A	unknown function
UniRef90	UHGV-1480159_27	UniRef90_UPI00057FE645	57.8	0.000000018	phage head closure protein	N/A
eggNOG-mapper	UHGV-1480159_27	86416.Clopa_0343	60.5	0.000000000326	N/A	N/A
NCBIFam	UHGV-1480159_27	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1480159_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1480159_28	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480159_29	UniRef90_UPI000E5564A4	271.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1480159_29	1235792.C808_00089	51.2	0.0000031	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1480159_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1480159_29	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_30	phrog_88	69.9	3.5e-20	major tail protein	tail
UniRef90	UHGV-1480159_30	UniRef90_A0A1G5CNS8	150.0	4.1002e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1480159_30	1235790.C805_01798	61.6	0.00000000597	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1480159_30	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1480159_30	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1480159_31	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1480159_32	K20478	54.7	1.9e-16	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1480159_32	phrog_5218	285.8	0	N/A	unknown function
UniRef90	UHGV-1480159_32	UniRef90_UPI000E474EFE	1779.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1480159_32	908340.HMPREF9406_2570	283.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-1480159_32	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1480159_32	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1480159_32	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_33	phrog_33	83.7	3.6e-24	distal tail protein Dit	tail
UniRef90	UHGV-1480159_33	UniRef90_A0A1G5CPA2	132.0	4.7e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-1480159_33	1160721.RBI_I01575	94.4	2.51e-20	Phage tail protein	N/A
COG	UHGV-1480159_33	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1480159_33	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_34	phrog_1067	104.5	2.8e-31	minor head protein	head and packaging
UniRef90	UHGV-1480159_34	UniRef90_A0A348ZBV6	150.0	2.57e-38	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1480159_34	1567011.A0A0A7RUI9_9VIRU	63.9	0.0000000388	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1480159_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1480159_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1480159_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480159_35	UniRef90_A0A374N9Y2	194.0	0	N/A	N/A
structural_annotation	UHGV-1480159_35	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_37	phrog_1863	70.3	2.2e-21	N/A	unknown function
UniRef90	UHGV-1480159_37	UniRef90_UPI001F223E8B	103.0	1.78e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1480159_37	1226322.HMPREF1545_04027	74.3	1.54e-16	N/A	N/A
PHROG	UHGV-1480159_38	phrog_443	62.7	9.6e-18	holin	lysis
UniRef90	UHGV-1480159_38	UniRef90_R6R2Q3	89.7	2.91e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1480159_38	626523.GCWU000342_01012	83.6	2.62e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1480159_38	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1480159_38	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1480159_39	phrog_18591	129.5	1.6e-38	N/A	unknown function
eggNOG-mapper	UHGV-1480159_39	1230343.CANP01000040_gene3044	176.0	0	N/A	N/A
KOfam	UHGV-1480159_40	K01447	57.6	2.6e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1480159_40	phrog_20388	305.6	0	endolysin	lysis
UniRef90	UHGV-1480159_40	UniRef90_A0A374N1L8	538.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1480159_40	1203606.HMPREF1526_00253	318.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1480159_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1480159_40	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1480159_40	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1480159_40	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-1480159_41	K00571	153.6	1.4013e-45	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1480159_41	phrog_67	133.0	6.59998e-41	DNA methyltransferase	other
UniRef90	UHGV-1480159_41	UniRef90_A0A374DDR5	428.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1480159_41	877240.E1AC06_9CAUD	230.0	0	helicase activity	N/A
PADLOC	UHGV-1480159_41	MTase_II_00157	152.4	2.8026e-45	Type II methyltransferase	RM
Pfam	UHGV-1480159_41	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1480159_41	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A